Team:Cornell/modelingJS
const svgHeight = 800; //svg is container containing everything const svgWidth = 1100; var shadow = false; //shadow determines the drop shadow, not sure if implementing yet var GFParr = []; var hrpRarr = []; var hrpSarr = []; var isParsed = true; //whether the data is parsed or not var freq = 1; //freq is current frequency var GFPpath = null; var hrpRpath = null; var hrpSpath = null; const datalength = 398; //length of data aka how many frequencies . const datarange = .1; //how wide the data spreads var hrpR = null; //these contain the circles that shows the data var hrpS = null; var GFP = null; var focus = null; var movable = true; var form = d3.format("0.5f"); //formating var form2 = d3.format("0.0f"); //svg is the svg container reference svg2 might be animation /*const svg2 = d3.select("body").append("svg")
.attr("width", svgWidth)
.attr("height", svgHeight); */
const svg = d3.select("#modeling-content").append("svg")
.attr("width", svgWidth)
.attr("height", svgHeight)
.style("opacity", 0);
// svg repositioning using jquery //$("svg").css({top: 50, left: 200, position:'absolute'}); //$("rect").css({position:'absolute'}); //creating the graph
const graphHeight = 300; const graphWidth = 600; const offsety = 100; //offset of the svg from border const offsetx = (450); //creating interpolation function for our graph var xScale = d3.scaleLinear().domain([0,datalength]).range([0, graphWidth]); var xScale2 = d3.scaleLinear().domain([0,140]).range([0, graphWidth]); var yScale = d3.scaleLinear().domain([0,datarange]).range([graphHeight, 0]); var yScale2 = d3.scaleLinear().domain([0,1]).range([graphHeight, 0]); //Code for text ====================================================================================================
//svg.append("text").text("Values").attr("x", graphWidth+300).attr("y", 100); svg.append("text").text("Frequency:").attr("x", 30).attr("y", 210); svg.append("text").text("hrpS:").attr("x", 30).attr("y", 240).attr("fill", "blue"); svg.append("text").text("hrpR:").attr("x", 30).attr("y", 270).attr("fill", "green"); svg.append("text").text("GFP:").attr("x", 30).attr("y", 300).attr("fill", "red");
var FrequencyText = svg.append("text").text("0s").attr("x", 110).attr("y", 210); var HRPSText = svg.append("text").text("0").attr("x", 80).attr("y", 240).attr("fill", "blue"); var HRPRText = svg.append("text").text("0").attr("x", 80).attr("y", 270).attr("fill", "green"); var GFPText = svg.append("text").text("0").attr("x", 70).attr("y", 300).attr("fill", "red");
//Code for text ====================================================================================================
//Our function to convert Matrix to points on a line const line = d3.line()
.curve(d3.curveLinear)
.x(function(d) {return xScale(d[0]-1);}) //since the first column is 1->data value, this extablished the domain first column basically 1,2,3,4...
.y(function(d) {return yScale(d[freq]);});
createMovingObject(); createGraph(); parseData(); //read data and make graphs //makeShadow(); //drop shadow MyTransition(); //Radial Scroller Code ============================================================================================================================== var PI2 = Math.PI*2; var slideable = false; var radius = 200; for (var i = 0; i < 8; i++) {
svg.append("line")
.attr("x1", (radius-5)*Math.cos(i*PI2/(8*2) - Math.PI/2))
.attr("x2", (radius+5)*Math.cos(i*PI2/(8*2) - Math.PI/2))
.attr("y1", (radius-5)*Math.sin(i*PI2/(8*2) - Math.PI/2))
.attr("y2", (radius+5)*Math.sin(i*PI2/(8*2) - Math.PI/2))
.attr("stroke-width", 2)
.attr("stroke", d3.rgb(201, 56, 67))
.attr("transform", "translate(0, 250)");
} var arc = d3.arc()
.startAngle(0) .outerRadius((radius+3)) //centered at 125 .innerRadius((radius-3)) .cornerRadius(2) .padAngle(0.005) .endAngle(PI2);
var CurrAngle = 0;
var arc2 = d3.arc()
.startAngle(0) .outerRadius((radius+3)) .innerRadius((radius-3)) .cornerRadius(2) .padAngle(0.005) .endAngle(0);
var RadSlider = svg.append("path")
.attr("d", arc)
.attr("id", "RadSlider")
.attr("fill", d3.rgb(227, 172, 36))
.attr("transform", "translate(0,250)");//yellowish?
var DragLine = svg.append("path")
.attr("d", arc2)
.attr("fill", d3.rgb(201, 56, 67)) //now reddish //blueish d3.rgb(13, 28, 56)
.attr("transform", "translate(0,250)");
var DragObject = svg.append("circle")
.attr("r", 10)
.attr("cx", 0)
.attr("cy", -150)
.attr("transform", "translate(0,"+radius+")")
.attr("fill", d3.rgb(201, 56, 67)); //redish
var DragOverLay = svg.append("circle") //the overlay
.attr("pointer-events", "all")
.attr("class", "overlay")
.attr("r", (radius+75))
.attr("cx", 0)
.attr("cy", 250)
.attr("fill", "none")
.on("mousemove", Dragging)
.on("mousedown", mouseDrag4)
.on("mouseup", mouseDrag2)
.on("mouseout", mouseDrag2);
function Dragging() {
//console.log(slideable);
if (slideable) {
//console.log(d3.mouse(document.body)); //d3.mouse(this) is current object, we want parent
CurrAngle = Math.atan(d3.mouse(d3.select("#RadSlider").node())[1]/d3.mouse(d3.select("#RadSlider").node())[0]) + Math.PI/2; //referencing the slider as the coordinate
//console.log(CurrAngle);
arc2.endAngle(CurrAngle);
DragLine.attr("d", arc2);
DragObject.transition().duration(1).attr("cx", radius*Math.cos(CurrAngle - Math.PI/2)).attr("cy", radius*Math.sin(CurrAngle - Math.PI/2) + (250-radius))
}
} function mouseDrag1() {
slideable = true;
} function mouseDrag2() {
slideable = false;
freq = Math.round(32*CurrAngle/Math.PI)+1; //I used round istead of floor because the simple slider uses round on axis
//console.log(freq);
FrequencyText.text(form2(3550+freq*50) + "s");
//if (isParsed) {
GFPpath.transition().attr("d", line(GFParr));
hrpSpath.transition().attr("d", line(hrpSarr));
hrpRpath.transition().attr("d", line(hrpRarr));
// }
}
function mouseDrag4() {
CurrAngle = Math.atan(d3.mouse(d3.select("#RadSlider").node())[1]/d3.mouse(d3.select("#RadSlider").node())[0]) + Math.PI/2;
arc2.endAngle(CurrAngle);
DragLine.attr("d", arc2);
DragObject.transition().duration(10).attr("cx", radius*Math.cos(CurrAngle - Math.PI/2)).attr("cy", radius*Math.sin(CurrAngle - Math.PI/2) + (250-radius))
slideable = true;
}
//Radial Scroller Code ============================================================================================================================== //all functions function parseData() { //asynchronous thing
//creates an array of arrays with arr[time][data]
d3.csv("https://static.igem.org/mediawiki/2018/9/9f/T--Cornell--GFP.csv", function(data) {
GFParr.push(Object.values(data));
if (GFParr.length == datalength+1) {
//console.log(arr); testing
GFPpath = svg.append("path").attr("d", line(GFParr))
.attr("stroke", "red")
.attr("stroke-width", 1)
.attr("fill", "none")
.style("filter", function() { return shadow ? "url(#drop-shadow)" : "" ;})
.attr("transform", "translate("+offsetx+","+ offsety+")");
}
});
d3.csv("https://static.igem.org/mediawiki/2018/a/a0/T--Cornell--hrpS.csv", function(data) {
hrpSarr.push(Object.values(data));
if (hrpSarr.length == datalength+1) {
//console.log(arr); testing
hrpSpath = svg.append("path").attr("d", line(hrpSarr))
.attr("stroke", "blue")
.attr("stroke-width", 1)
.attr("fill", "none")
.style("filter", function() { return shadow ? "url(#drop-shadow)" : "" ;})
.attr("transform", "translate("+offsetx+","+ offsety+")");
}
});
d3.csv("https://static.igem.org/mediawiki/2018/6/6d/T--Cornell--hrpR.csv", function(data) {
hrpRarr.push(Object.values(data));
if (hrpRarr.length == datalength+1) {
//console.log(arr); testing
hrpRpath = svg.append("path").attr("d", line(hrpRarr))
.attr("stroke", "green")
.attr("stroke-width", 1)
.attr("fill", "none")
.style("filter", function() { return shadow ? "url(#drop-shadow)" : "" ;})
.attr("transform", "translate("+offsetx+","+ offsety+")");
}
});
} function createGraph() { //creates the shape of the graph
var x_axis = d3.axisBottom().scale(xScale2).ticks(20);
var y_axis = d3.axisLeft().scale(yScale);
var x_title = svg.append("text").text("Minutes").attr("x", svgWidth/2 -50).attr("y", graphHeight+offsety+50);
//overlay that determines points
svg.append("rect")
.attr("pointer-events", "all")
.attr("class", "overlay")
.attr("x", offsetx)
.attr("y", offsety)
.attr("width", graphWidth)
.attr("height", graphHeight)
.attr("fill", "none")//you can also set color
.on("mouseover", mouseOver)
.on("mouseout", mouseOut)
.on("click", mouseClick)
.on("mousemove", mouseMove);
for (let i = 1; i<11 ; i++) {
svg.append("line")
.style("stroke", "grey")
.style("stroke-dasharray", "8,8")
.style("opacity", 0.3)
.attr("x1", offsetx)
.attr("y1", yScale2(0.1*i)+offsety)
.attr("x2", graphWidth + offsetx)
.attr("y2", yScale2(0.1*i)+offsety);
}
svg.append("g")
.call(y_axis)
.attr("transform", "translate(" + offsetx + ","+ offsety +")");
svg.append("g")
.call(x_axis)
.attr("transform", "translate("+offsetx +"," + (graphHeight+offsety) + ")");
} function createMovingObject() {
focus = svg.append("g") //focus is our object that moves
.attr("class", "focus")
.raise()
.style("display", "none");
focus.append("line")
.style("stroke", "black")
.attr("x1", 0)
.attr("y1", offsety)
.attr("x2", 0)
.attr("y2", offsety+graphHeight);
GFP = focus.append("circle")
.attr("r", 5)
.attr("fill", "red")
.attr("stroke", "white");
hrpR = focus.append("circle")
.attr("r", 5)
.attr("fill", "green")
.attr("stroke", "white");
hrpS = focus.append("circle")
.attr("r", 5)
.attr("fill", "blue")
.attr("stroke", "white");
} function mouseClick() {
movable = !movable;
} function mouseMove() {
if (movable) {
focus.select("line").attr("transform", "translate(" + d3.mouse(this)[0] + ",0)");
//console.log(GFParr[Math.round(xScale.invert(d3.mouse(this)[0] - offsetx))][freq]);
let xVAL = xScale.invert(d3.mouse(this)[0] - offsetx);
let xRound = Math.floor(xVAL);
let GFPyValue = (yScale(GFParr[xRound+1][freq]) - yScale(GFParr[xRound][freq]))*(xVAL-xRound)+offsety+yScale(GFParr[xRound][freq]);
let hrpSyValue = (yScale(hrpSarr[xRound+1][freq]) - yScale(hrpSarr[xRound][freq]))*(xVAL-xRound)+offsety+yScale(hrpSarr[xRound][freq]);
let hrpRyValue = (yScale(hrpRarr[xRound+1][freq]) - yScale(hrpRarr[xRound][freq]))*(xVAL-xRound)+offsety+yScale(hrpRarr[xRound][freq]);
//let yVAL = (yScale(arr[Math.round(xScale.invert(d3.mouse(this)[0] - offsetx))][freq])+offsety);
//d3.select("#value").text("GFP = " + GFPyValue + ", hrpS = " + hrpSyValue + ", hrpR = " + hrpRyValue);
HRPSText.text(form((hrpSarr[xRound][freq])));
HRPRText.text(form(hrpRarr[xRound][freq]));
GFPText.text(form(GFParr[xRound][freq]));
GFP.attr("transform", "translate(" + d3.mouse(this)[0] + "," + GFPyValue + ")");
hrpS.attr("transform", "translate(" + d3.mouse(this)[0] + "," + hrpSyValue + ")");
hrpR.attr("transform", "translate(" + d3.mouse(this)[0] + "," + hrpRyValue + ")");
}
//focus.select("rect").attr("transform", "translate(" + d3.mouse(this)[0] + "," + GFPyValue + ")"); originally wanted moving rect.
} function mouseOut() {
if (movable) {
focus.style("display", "none");
}
} function mouseOver() {
if (movable) {
focus.style("display", null);
}
} function MyTransition() {
svg.transition().delay(1000).duration(1000).style("opacity", 1);
} function makeShadow() {
if (shadow) {
let defs = svg.append("defs");
let stdDeviation = 3;
let filter = defs.append("filter")
.attr("id", "drop-shadow")
.attr("height", "130%")
.attr("filterUnits","userSpaceOnUse");
filter.append("feColorMatrix")
.attr("result", "offOut")
.attr("in", "offOut")
.attr("type", "matrix")
.attr("values", "1 1 1 1 1 " +
"0 0 0 0 0 " +
"0 0 0 0 0 " +
"0 0 0 1 0");
filter.append("feGaussianBlur")
.attr("in", "SourceGraphic") //SourceAlpha for black shadow/ matrixOut for color / graphic for its own color
.attr("stdDeviation", stdDeviation)
.attr("result", "blur");
filter.append("feOffset")
.attr("in", "blur")
.attr("dx", stdDeviation)
.attr("dy", stdDeviation)
.attr("result", "offsetBlur");
let feMerge = filter.append("feMerge");
feMerge.append("feMergeNode").attr("in","offsetBlur");
feMerge.append("feMergeNode").attr("in", "SourceGraphic");
}
}