Tefiducky8 (Talk | contribs) |
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− | + | <title>C-lastin, Modeling</title> | |
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− | + | <link rel="stylesheet" type="text/css" href="ecu--modeling.css"> | |
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<a href="https://2018.igem.org/Team:Ecuador"> | <a href="https://2018.igem.org/Team:Ecuador"> | ||
− | + | <div class="ecuador_home"> | |
iGEM ECUADOR | iGEM ECUADOR | ||
</div> | </div> | ||
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MODELING | MODELING | ||
</div> | </div> | ||
− | + | </a> | |
<a class="ecuador_href_sub_text" href="https://2018.igem.org/Team:Ecuador/Design"> | <a class="ecuador_href_sub_text" href="https://2018.igem.org/Team:Ecuador/Design"> | ||
<div class="sub_menu_option"> | <div class="sub_menu_option"> | ||
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</div> | </div> | ||
− | + | </div> | |
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</div> | </div> | ||
</div> | </div> | ||
− | + | </div> | |
− | + | <div class="ec--modeling--container"> | |
− | + | <div class="ec--first--section"> | |
− | + | <div class="ec--main--title"> | |
− | + | <h1><a name="MOD">Modeling</a></h1> | |
− | + | </div> | |
− | + | <div class="ec--modeling--items"> | |
− | + | <ul> | |
+ | <li><a href="#MOD">Modeling</a></li> | ||
+ | <li><a href="#WWD">WHAT DID WE DO?</a></li> | ||
+ | <li><a href="#HWD">HOW DID WE DO IT?</a></li> | ||
+ | <li><a href="#RES">RESULTS</a></li> | ||
+ | <li><a href="#EXP">EXPERIENCE</a></li> | ||
+ | <li><a href="#ACK">ACKNOWLEDGEMENT</a></li> | ||
+ | </ul> | ||
+ | </div> | ||
+ | <div class="ec--img--home--slider">Reference image</div> | ||
+ | </div> | ||
− | + | <div class="ec--nau--content"> | |
− | + | <div class="ec--sect--title"> | |
− | + | <h2><a name="WWD">WHAT DID WE DO?</a></h2> | |
− | + | <p>Parrafo<br></p> | |
− | + | <div class="ec--img--wwd--cont"> | |
− | + | <p><img width="700" height="500" src="recursos extras/modeling.jpeg" alt="Transfected with GFP (Green Fluorescent Protein) Recorded using a 63x objective 3 days in vitro mouse Made by Jurjen Broeke"></p> | |
− | + | </div> | |
− | + | <h3>Converting between absorbance of cells to absorbance of a known concentration of beads.</h3> | |
− | + | <p>...</p> | |
− | + | <h3>Counting colony-forming units (CFUs) from the sample.</h3> | |
− | + | <p>…</p> | |
− | + | <h2><a name="HWD">HOW DID WE DO IT?</a></h2> | |
− | + | <p>In order to avoid distortions in the results due to differences in the experimentation processes, we follow the procedures described in the iGEM protocol (<a href="https://static.igem.org/mediawiki/2018/0/09/2018_InterLab_Plate_Reader_Protocol.pdf">Plate reader protocol</a>, <a href="http://parts.igem.org/Help:Protocols/Competent_Cells">component_cells</a>, <a href="http://parts.igem.org/Help:Protocols/Transformation">Transformation</a>) | |
− | + | <br> | |
− | + | </p> | |
− | + | <br> | |
− | + | <h3>BIOBRICKS</h3> | |
− | + | <br> | |
− | + | ||
− | + | <div class="ec--biob--cont"> | |
− | </ | + | <div id="bigBox"> |
− | + | ||
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− | + | ||
− | + | ||
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− | + | ||
− | + | ||
− | + | ||
− | + | <div id="leftBox"> | |
− | + | <table border="0" cellspacing="8px" cellpadding="0"> | |
+ | <tr> | ||
+ | <td width="148" valign="top"><p ><strong>Device</strong><strong> </strong></p></td> | ||
+ | <td width="132" valign="top"><p ><strong>Part Number</strong><strong> </strong></p></td> | ||
+ | <td width="104" valign="top"><p ><strong>Location</strong><strong> </strong></p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="label-neg-c">Negative control</p></td> | ||
+ | <td width="132" valign="top"><p>BBa_R0040 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2D </p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="type">Positive control </p></td> | ||
+ | <td width="132" valign="top"><p>BBa_I20270 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2B</p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="label-td1">Test Device 1 </p></td> | ||
+ | <td width="132" valign="top"><p>BBa_J364000 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2F </p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="label-td2">Test Device 2 </p></td> | ||
+ | <td width="132" valign="top"><p>BBa_J364001 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2H </p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="label-td3">Test Device 3 </p></td> | ||
+ | <td width="132" valign="top"><p>BBa_J364002 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2J </p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="label-td4">Test Device 4 </p></td> | ||
+ | <td width="132" valign="top"><p>BBa_J364007 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2L </p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="label-td5">Test Device 5 </p></td> | ||
+ | <td width="132" valign="top"><p>BBa_J364008 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2N </p></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="148" valign="top"><p id="label-td6">Test Device 6 </p></td> | ||
+ | <td width="132" valign="top"><p>BBa_J364009 </p></td> | ||
+ | <td width="104" valign="top"><p>Well 2P </p></td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <div id="rightBox"> | ||
+ | <div class="ec--biobr--location--container"> | ||
+ | <div class="loc-neg-c"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="359" height="75" src="modeling_6_oct_clip_image002.png"> </p> | ||
+ | <br> | ||
+ | <p>length: 54 bp </p> | ||
+ | </div> | ||
+ | <div class="textdis" id="pos_c"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="195" height="70" src="modeling_6_oct_clip_image003.png"></p> | ||
+ | <br> | ||
+ | <p>length: 919 bp</p> | ||
+ | </div> | ||
+ | <div class="loc-td1"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="195" height="51" src="modeling_6_oct_clip_image004.png" > </p> | ||
+ | <br> | ||
+ | <p>length: 918 bp </p> | ||
+ | </div> | ||
+ | <div class="loc-td2"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="189" height="54" src="modeling_6_oct_clip_image005.png" ></p> | ||
+ | <br> | ||
+ | <p>length: 918 bp</p> | ||
+ | </div> | ||
+ | <div class="loc-td3"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="197" height="63" src="modeling_6_oct_clip_image006.png" > </p> | ||
+ | <br> | ||
+ | <p>length: 918 bp </p> | ||
+ | </div> | ||
+ | <div class="loc-td4"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="196" height="52" src="modeling_6_oct_clip_image007.png"></p> | ||
+ | <br> | ||
+ | <p>length: 918 bp</p> | ||
+ | </div> | ||
+ | <div class="loc-td5"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="188" height="64" src="modeling_6_oct_clip_image008.png" > </p> | ||
+ | <br> | ||
+ | <p>length: 918 bp </p> | ||
+ | </div> | ||
+ | <div class="loc-td6"> | ||
+ | <p><strong>Location</strong></p><br> | ||
+ | <p><img width="194" height="55" src="modeling_6_oct_clip_image009.png"></p> | ||
+ | <br> | ||
+ | <p>length: 918 bp</p> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
</div> | </div> | ||
− | + | <h2><a name="RES">RESULTS</a></h2> | |
− | + | <strong>Particle standard curves</strong> | |
− | + | <div class="ec--img--wwd--cont"> | |
− | + | <p><img src="recursos extras/A-PSC.1.png" width="775" height="445" alt=""/></p> | |
− | + | </div> | |
− | + | <div class="ec--img--wwd--cont"> | |
− | + | <p><img src="recursos extras/A-PSC.2.png" width="779" height="445" alt=""/></p> | |
− | <div class=" | + | </div> |
− | + | <br> | |
− | + | <p><strong>Fluorescein standard curves</strong> </p> | |
+ | <div class="ec--img--wwd--cont"> | ||
+ | <p><img src="recursos extras/A-FSC.1.png" width="779" height="445" alt=""/><br></p> | ||
+ | </div> | ||
+ | <div class="ec--img--wwd--cont"> | ||
+ | <img src="recursos extras/A-FSC.2.png" width="779" height="445" alt=""/><br> | ||
+ | </div> | ||
+ | <strong>Net Absorbance 600 as number of particles/100 uL</strong></p> | ||
+ | <div class="ec--img--wwd--cont"> | ||
+ | <p><img src="recursos extras/image019.png" width="752" height="452" alt=""/></p> | ||
</div> | </div> | ||
− | + | <div class="ec--img--wwd--cont"> | |
− | + | <p><img src="recursos extras/image021.png" width="752" height="452" alt=""/></p> | |
− | + | </div> | |
− | + | <h2><a name="EXP">EXPERIENCE</a></h2> | |
− | + | <div class="ec--img--wwd--cont"> | |
+ | <p><img src="https://svgsilh.com/svg/2324013-2196f3.svg" width="752" height="452" alt=""/></p> | ||
+ | </div> | ||
+ | <p><em>As a team the interlab challenge was useful because we learn about the protocols and the handling of the plate reader and how it can be used in later processes of our project</em></p> | ||
+ | <br> | ||
+ | <h2><a name="ACK">ACKNOWLEDGEMENT</a></h2> | ||
+ | <br> | ||
+ | As a team, we would like to thank the Biomedicine team of Universidad Tecnica Equinoccial and especially Linda Guaman, member of their research team, for allowing us to use their measurement equipment, which were essential for the completion of the Interlab.</div> | ||
+ | <div class="ec--sect--text"></div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="ec--hump--section"> | ||
+ | <div class="ec--hump--content"> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="ecuador_footer"> | ||
+ | <div class="ec--footer--title">Quote</div> | ||
+ | <div class="ec--footer--text">“Research from the middle of the world”</div> | ||
+ | <div class="ec--footer--title">Sponsoring</div> | ||
+ | <div class="ec--footer--container"></div> | ||
+ | <div class="ec--footer--title">Follow us on</div> | ||
+ | <div class="ec--footer--text">Fb & Inst</div> | ||
+ | <div class="ec--footer--title">Contact us</div> | ||
+ | <div class="ec--footer--container"> | ||
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Revision as of 03:56, 7 October 2018
WHAT DID WE DO?
Parrafo
Converting between absorbance of cells to absorbance of a known concentration of beads.
...
Counting colony-forming units (CFUs) from the sample.
…
HOW DID WE DO IT?
In order to avoid distortions in the results due to differences in the experimentation processes, we follow the procedures described in the iGEM protocol (Plate reader protocol, component_cells, Transformation)
BIOBRICKS
Device |
Part Number |
Location |
Negative control |
BBa_R0040 |
Well 2D |
Positive control |
BBa_I20270 |
Well 2B |
Test Device 1 |
BBa_J364000 |
Well 2F |
Test Device 2 |
BBa_J364001 |
Well 2H |
Test Device 3 |
BBa_J364002 |
Well 2J |
Test Device 4 |
BBa_J364007 |
Well 2L |
Test Device 5 |
BBa_J364008 |
Well 2N |
Test Device 6 |
BBa_J364009 |
Well 2P |
Location
length: 54 bp
Location
length: 919 bp
Location
length: 918 bp
Location
length: 918 bp
Location
length: 918 bp
Location
length: 918 bp
Location
length: 918 bp
Location
length: 918 bp
RESULTS
Particle standard curvesFluorescein standard curves
EXPERIENCE
As a team the interlab challenge was useful because we learn about the protocols and the handling of the plate reader and how it can be used in later processes of our project
ACKNOWLEDGEMENT
As a team, we would like to thank the Biomedicine team of Universidad Tecnica Equinoccial and especially Linda Guaman, member of their research team, for allowing us to use their measurement equipment, which were essential for the completion of the Interlab.