Difference between revisions of "Team:iTesla-SoundBio/design"

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<a href="#graphicsum">Graphic Summary</a>
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<a href="#constructdesign">Construct Design</a>
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<a href="#2"><img src="https://static.igem.org/mediawiki/2018/2/21/T--itesla-soundbio--phase2.png" alt="Phase 2" style="width:100%"></a>
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<a href="#Biobrick">Biobrick: <br>Factor C gene in E. coli pSB1C3</a>
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<a href="#Integration">Integration: <br>Factor C in B.Subtilis Chromosomal DNA</a>
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<a href="#Expression">Expression: <br>Factor C protein verification</a>
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<a href="#3"><img src="https://static.igem.org/mediawiki/2018/9/91/T--itesla-soundbio--nextsteps.png" alt="next steps" style="width:100%"></a>
 
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Construct design: <br>
 
Construct design: <br>
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Integration: <br>
 
Factor C in B. Subtilis Chromosomal DNA.
 
We then digest full Factor C from Biobrick, and insert it into pAX01, a B. Subtilis integration factor. Then, we transform B. Subtilis with pAX01. After plasmid pAX01 enters B. Subtilis, there is a chance that it will integrate into chromosomal DNA.
 
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Expression
 
Factor C protein extract: <br>
 
B. Subtilis are used to express Factor C because they are gram positive and will not damage the Factor C protein. In contrast, E. coli is gram negative and will cleave FC protein. After B. Subtilis express and produce Factor C, we can then extract Factor C protein for further experiment.   
 
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Revision as of 01:31, 8 October 2018

Engineer the Future

That Prosperity and Environmentalism Coexist

Phase 1
Phase 2
next steps
This is a graphic summary of our project

Construct design:
The goal for our project is to insert Factor C gene into the chromosomal DNA of B. Subtilis, and have it express this Factor C protein. At the same time, to fulfill iGEM competition requirements, we also need to insert Factor C gene into E.coli plasmid pSB1C3 and submit it as a biobrick for iGEM competition.
We decided to insert Factor C gene into E.coli plasmid pSB1C3 first; then, integrate Factor C gene into the chromosomal DNA of B. Subtilis using pAX01 integration factor (a B. Subtilis specific plasmid).

Biobrick:
Factor C in E.coli pSB1C3 We couldn't order Factor C from factory because it is too large (about 3000 base pairs https://benchling.com/itesla-soundbio/f/gPUeHZXf-drafts/seq-Jq87odxl-psb1c3factor-c/edit), so we order it as two fragments, FC1 and FC2. First, insert FC1 into pSB1C3. Then, insert FC2 into the plasmid, too. This pSB1C3 with full Factor C will be submitted for biobrick.