General safety concerns

Our ENABLE project has provided diverse real-world applications. As a foundational advance project, the majority of the immediate users of our project are researchers in biology labs. Components in our project are perfectly safe to use and be modified in standard biology laboratories equipped with a cell-culturing room and a Class II biological safety cabinet. To ensure our project remains safe and ethical when applied to other practical usages in the long term, we have hosted a special debate and a creative display between our team and the public, and several mutual points have been reached. For more information, please visit our Human Practice page.

Laboratory practice

Because we have inserted our logic gates into mammalian cells to assay the functional outputs, we were performing our experiments both in E. coli strains and on mammalian 293T and HeLa cells. We have carried out the experiments in the lab of our supervisor, Liang Cai, who was also our Cell Biology course instructor. The setup in Cai Lab meets all the standards for working on Risk Group 2 organisms. Since some of our team members have never worked on mammalian cells before joining the team, we divided our lab work into two parts, carrying out by either the E. coli workaholic or the mammalian workaholic. This safety arrangement grants only the members who previously have been fully trained with the mammalian cell culture experimental skills to perform related experiments.

For further precaution, even though every team member has previous lab experience and has passed the laboratory safety knowledge test, organzied by our university, they were trained again by members of 2017 iGEM team on basic safety measures during the assembly of the team. Before performing experiments in Cai Lab, we were all required to follow the Good Lab Practices written by our supervisor, and a subsequent test was taken to ensure we understood the rules precisely. Until then, we were allowed to start doing experiments on our own.

Specific safety concerns on our project

Aside from the general concerns for lab safety, we would like to reflect upon aspects which were related to our project such as:

Molecular cloning

Most of our E. coli experiments were done through molecular cloning. The strains of Escherichia coli we used were T-FAST and DH5α competence bacteria, both of which will die in the natural environment without supplied nutrients. The plasmids we transformed into the bacteria do not contain anything related to virulence. Our designed and encoded genes will be translated into fluorescent protein fusions and transcription factors.

We made efforts to ensure those bacteria were kept within control. Methods we utilized included sealing the culture medium and plates with parafilm, sterilizing our clean benches with 75% ethanol and ultraviolet illumination before and after the operations, and washing our hands upon entering and leaving the lab, intact nitrile gloves all the time, etc.

To visualize double strand DNA, we used ethidium bromide. We always wear an additional pair of plastic gloves and take off immediately after handing ethidium bromide containing material, to avoid spreading the contamination to other regions of the lab.

Cell culturing

Before entering the cell culture room, we always make sure to exchange the shoes or wearing shoe cover, and put on nitrile gloves. All cell culture operations were done in biosafety cabinets to keep the cells in a sterile environment as well as avoid serum contamination out to the environment. We used non-self replicable retrovirus to generate stable-transfected cell lines for our experiments.

Additional lab training when coaching high school students

We hosted a lab training program as part of our Human Practice page during the summer semester 2018. As all the students were very inexperienced, we took special care in ensuring their safety during the program. Beside memorizing all the lab safety protocols and policies, they were required to wear long trousers inside their protective gowns. It was summertime, and luckily we had the air conditioning working. Moreover, we ensured that they were under at least one [iGEM team member] supervision the whole time throughout their stay in the lab, no matter they were doing experiments or eating/drinking in the rest area.