Difference between revisions of "Team:TecCEM/Basic Part"

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{{TecCEM}}
 
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    <img src="https://static.igem.org/mediawiki/2018/a/aa/T--TecCEM--Cells.gif" alt="Cell Gif">
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    <h1>Basic Parts</h1>
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</div>
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<div class="wrapper">
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    <nav class="sidebar-index d-none d-md-block">
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        <div class="sidebar-header">
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            <h3>Parts/ Basic Parts</h3>
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        </div>
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        <a href="#partsSubmenu" data-toggle="collapse" aria-expanded="false" data-offset="100" data-change="sidemenu">
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            <span data-change="el" class="d-inline-block open"></span>
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            Index
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        </a>
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        <ul class="collapse list-unstyled" id="partsSubmenu">
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            <li>
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                <a data-target="#K2719000">BBa_K2719000</a>
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            </li>
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            <li>
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                <a data-target="#K2719001">BBa_K2719001</a>
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            </li>
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            <li>
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                <a data-target="#K2719002">BBa_K2719002</a>
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            </li>
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            <li>
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                <a data-target="#K2719003">BBa_K2719003</a>
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            </li>
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            <li>
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                <a data-target="#K2719004">BBa_K2719004</a>
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            </li>
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            <li>
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                <a data-target="#K2719006">BBa_K2719006</a>
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            </li>
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            <li>
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                <a data-target="#K2719008">BBa_K2719008</a>
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            </li>
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        </ul>
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    </nav>
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    <div class="content parts-div">
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        <div class="container">
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            <div class="row">
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                <div class="col">
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                    <h1>Basic Parts</h1>
  
 +
                    <h2 id="K2719000"><a href="http://parts.igem.org/Part:BBa_K2719000">BBa_K2719000</a>: GST Coding
 +
                        site</h2>
 +
                    <p>Glutathione S-transferase (GST) is a peptide derived from Schistosoma japonicum, in which a
 +
                        target
 +
                        protein may be fused on the N-terminal. This fusion allows the purification of the target
 +
                        protein using
 +
                        glutathione affinity and maximize the presence of the protein in soluble state, rather than on
 +
                        inclusion bodies. This tag may be later removed by adding a protease recognition site between
 +
                        GST and
 +
                        the target protein (Harper & Speicher, 2013).</p>
  
 +
                    <h2 id="K2719001"><a href="http://parts.igem.org/Part:BBa_K2719001">BBa_K2719001</a>: Tenascin
 +
                        Domain V</h2>
 +
                    <p>Tenascin is a human protein that is involved in tissue regeneration processes. The domain V
 +
                        contains
 +
                        heparin binding sites that are fundamental for our scaffold.
 +
                        Also contains multiple growth factor binding sites and, even when we are only working with
 +
                        leptin is
 +
                        important because it would help in the improvement of tissue regeneration. In addition, it has
 +
                        been
 +
                        reported that it participated stem cells signalling.</p>
  
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<div class="clear"></div>
+
                    <h2 id="K2719002"><a href="http://parts.igem.org/Part:BBa_K2719002">BBa_K2719002</a>: GST-Tenascin
 +
                        Domain V
 +
                        Fusion
 +
                        Protein</h2>
 +
                    <p>This part is the fusion between both proteins and that helps us to simplify tenascin
 +
                        purification. GST
 +
                        has tenascin fused on the N-terminal. For more information see BBa_K2719001 and BBa_K2719003.</p>
  
 +
                    <h2 id="K2719003"><a href="http://parts.igem.org/Part:BBa_K2719003">BBa_K2719003</a>: Optimized GST
 +
                        Coding
 +
                        site</h2>
 +
                    <p>GST coding sequence (see part BBa_K2719000) with codon optimization for E.coli BL21 (DE3) to
 +
                        avoid
 +
                        complications in the production of this recombinant protein.</p>
  
 +
                    <h2 id="K2719004"><a href="http://parts.igem.org/Part:BBa_K2719004">BBa_K2719004</a>: Tenascin
 +
                        Fibronectin
 +
                        Domains</h2>
 +
                    <p>Coding sequence from tenascin fibronectin domains I-V have the property of interacting with the
 +
                        proliferation of fibroblast, but the domain with the main characteristic previously mentioned
 +
                        is domain
 +
                        V (see part BBa_K2719001).</p>
  
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<div class="column full_size">
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                    <h2 id="K2719006"><a href="http://parts.igem.org/Part:BBa_K2719006">BBa_K2719006</a>: Collagen V-
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<h1>Basic Parts</h1>
+
                        like
 +
                        protein coding
 +
                        site</h2>
 +
                    <p>Collagen V is one of the main proteins involved in the extracellular matrix, thus it would be
 +
                        important
 +
                        in the structure of our scaffold. The main challenge for producing recombinant collagen V is
 +
                        that for
 +
                        its correct structure it requires post-traductional modifications, specially the hydroxylation
 +
                        of
 +
                        proline. To overcome this challenge, we designed this part to incorporate hydroxyproline, a
 +
                        non-canonical amino acid. For its proper incorporation, this part is optimized for its use on
 +
                        E.coli
 +
                        Rosetta (DE3).</p>
  
−
<h2><a href="http://parts.igem.org/Part:BBa_K2719000">BBa_K2719000</a>: GST Coding site</h2>
+
                    <h2 id="K2719008"><a href="http://parts.igem.org/Part:BBa_K2719008">BBa_K2719008</a>: Leptin coding
−
<p>Glutathione S-transferase (GST) is a peptide derived from Schistosoma japonicum, in which a target protein may be fused on the N-terminal.  This fusion allows the purification of the target protein using glutathione affinity and maximize the presence of the protein in soluble state, rather than on inclusion bodies.  This tag may be later removed by adding a protease recognition site between GST and the target protein (Harper & Speicher, 2013).</p>
+
                        site.</h2>
−
+
                    <p>This is one of the most important parts because is the growth factor that we are using for
−
<h2><a href="http://parts.igem.org/Part:BBa_K2719001">BBa_K2719001</a>: Tenascin Domain V</h2>
+
                        accelerating
−
<p>Tenascin is a human protein that is involved in tissue regeneration processes.  The domain V contains heparin binding sites that are fundamental for our scaffold.
+
                        the process of skin regeneration. Is a protein that is found in adipocytes cells on many living
−
Also contains multiple growth factor binding sites and, even when we are only working with leptin is important because it would help in the improvement of tissue regeneration. In addition, it has been reported that it participated stem cells signalling.</p>
+
                        beings
−
 
+
                        and it has been discovered that it has a regenerating property, because it has been found in
−
<h2><a href="http://parts.igem.org/Part:BBa_K2719002">BBa_K2719002</a>: GST-Tenascin Domain V Fusion Protein</h2>
+
                        many wound
−
<p>This part is the fusion between both proteins and that helps us to simplify tenascin purification. GST has tenascin fused on the N-terminal. For more information see BBa_K2719001 and BBa_K2719003.</p>
+
                        repair processes. It has been shown that it increases glucose intake speeding up metabolism,
−
 
+
                        thus,
−
<h2><a href="http://parts.igem.org/Part:BBa_K2719003">BBa_K2719003</a>: Optimized GST Coding site</h2>
+
                        accelerating cell proliferation.</p>
−
<p>GST coding sequence (see part BBa_K2719000) with codon optimization for E.coli BL21 (DE3) to avoid complications in the production of this recombinant protein.</p>
+
                </div>
−
 
+
            </div>
−
<h2><a href="http://parts.igem.org/Part:BBa_K2719004">BBa_K2719004</a>: Tenascin Fibronectin Domains</h2>
+
        </div>
−
<p>Coding sequence from tenascin fibronectin domains I-V have the property of interacting with the proliferation of fibroblast, but the domain with the main characteristic previously mentioned is domain V (see part BBa_K2719001).</p>
+
    </div>
−
 
+
−
<h2><a href="http://parts.igem.org/Part:BBa_K2719006">BBa_K2719006</a>: Collagen V- like protein coding site</h2>
+
−
<p>Collagen V is one of the main proteins involved in the extracellular matrix, thus it would be important in the structure of our scaffold.  The main challenge for producing recombinant collagen V is that for its correct structure it requires post-traductional modifications, specially the hydroxylation of proline.  To overcome this challenge, we designed this part to incorporate hydroxyproline, a non-canonical amino acid. For its proper incorporation, this part is optimized for its use on E.coli Rosetta (DE3).</p>
+
−
 
+
−
<h2><a href="http://parts.igem.org/Part:BBa_K2719008">BBa_K2719008</a>: Leptin coding site.</h2>
+
−
<p>This is one of the most important parts because is the growth factor that we are using for accelerating the process of skin regeneration. Is a protein that is found in adipocytes cells on many living beings and it has been discovered that it has a regenerating property, because it has been found in many wound repair processes. It has been shown that it increases glucose intake speeding up metabolism, thus, accelerating cell proliferation.</p>
+
−
 
+
−
A <b>basic part</b> is a functional unit of DNA that cannot be subdivided into smaller component parts. <a href="http://parts.igem.org/wiki/index.php/Part:BBa_R0051">BBa_R0051</a> is an example of a basic part, a promoter regulated by lambda cl.
+
−
</p>
+
−
 
+
−
<p>Most genetically-encoded functions have not yet been converted to BioBrick parts. Thus, there are <b>many</b> opportunities to find new, cool, and important genetically encoded functions, and refine and convert the DNA encoding these functions into BioBrick standard biological parts. </p>
+
 
</div>
 
</div>
  
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<div class="highlight decoration_background">
 
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<h3>Note</h3>
 
−
<p>This page should list all the basic parts your team has made during your project. You must add all characterization information for your parts on the Registry. You should not put characterization information on this page. Remember judges will only look at the first part in the list for the Best Basic Part award, so put your best part first!</p>
 
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</div>
 
−
</div>
 
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−
 
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<div class="column full_size">
 
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<h3>Best Basic Part Special Prize</h3>
 
−
 
−
<p> To be eligible for this award, this part must adhere to <a href="http://parts.igem.org/DNA_Submission">Registry sample submission guidelines</a> and have been sent to the Registry of Standard Biological Parts. If you have a part you wish to nominate your team for this <a href="https://2018.igem.org/Judging/Awards">special prize</a>, make sure you add your part number to your <a href="https://2018.igem.org/Judging/Judging_Form">judging form</a> and delete the box at the top of this page.
 
−
 
−
<br><br>
 
−
<b>Please note:</b> Judges will only look at the first part number you list, so please only enter ONE (1) part number in the judging form for this prize. </p>
 
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</div>
 
  
 
</html>
 
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{{TecCEM/Footer}}
 
{{TecCEM/Footer}}

Revision as of 22:50, 11 October 2018

Cell Gif

Basic Parts

Basic Parts

BBa_K2719000: GST Coding site

Glutathione S-transferase (GST) is a peptide derived from Schistosoma japonicum, in which a target protein may be fused on the N-terminal. This fusion allows the purification of the target protein using glutathione affinity and maximize the presence of the protein in soluble state, rather than on inclusion bodies. This tag may be later removed by adding a protease recognition site between GST and the target protein (Harper & Speicher, 2013).

BBa_K2719001: Tenascin Domain V

Tenascin is a human protein that is involved in tissue regeneration processes. The domain V contains heparin binding sites that are fundamental for our scaffold. Also contains multiple growth factor binding sites and, even when we are only working with leptin is important because it would help in the improvement of tissue regeneration. In addition, it has been reported that it participated stem cells signalling.

BBa_K2719002: GST-Tenascin Domain V Fusion Protein

This part is the fusion between both proteins and that helps us to simplify tenascin purification. GST has tenascin fused on the N-terminal. For more information see BBa_K2719001 and BBa_K2719003.

BBa_K2719003: Optimized GST Coding site

GST coding sequence (see part BBa_K2719000) with codon optimization for E.coli BL21 (DE3) to avoid complications in the production of this recombinant protein.

BBa_K2719004: Tenascin Fibronectin Domains

Coding sequence from tenascin fibronectin domains I-V have the property of interacting with the proliferation of fibroblast, but the domain with the main characteristic previously mentioned is domain V (see part BBa_K2719001).

BBa_K2719006: Collagen V- like protein coding site

Collagen V is one of the main proteins involved in the extracellular matrix, thus it would be important in the structure of our scaffold. The main challenge for producing recombinant collagen V is that for its correct structure it requires post-traductional modifications, specially the hydroxylation of proline. To overcome this challenge, we designed this part to incorporate hydroxyproline, a non-canonical amino acid. For its proper incorporation, this part is optimized for its use on E.coli Rosetta (DE3).

BBa_K2719008: Leptin coding site.

This is one of the most important parts because is the growth factor that we are using for accelerating the process of skin regeneration. Is a protein that is found in adipocytes cells on many living beings and it has been discovered that it has a regenerating property, because it has been found in many wound repair processes. It has been shown that it increases glucose intake speeding up metabolism, thus, accelerating cell proliferation.