Shalinideb (Talk | contribs) |
Shalinideb (Talk | contribs) |
||
Line 96: | Line 96: | ||
<b> Reviews of BBrickIt: </b> | <b> Reviews of BBrickIt: </b> | ||
Numerous teams tried out our software and we got superb responses from many of them. | Numerous teams tried out our software and we got superb responses from many of them. | ||
− | Kalyani from <b>iGEM UCSD</b> said commended our software saying, | + | Kalyani from <b>iGEM UCSD</b> said commended our software saying, “Amazing Work!” |
<br> | <br> | ||
<br> | <br> | ||
− | <b>iGEM IISER Kolkata</b> were extremely happy to | + | <b>iGEM IISER Kolkata</b> were extremely happy to “bypass the hectic job of having to think of prefix and suffix sites, scars, illegal sites etc. before planning to clone anything in the standard vectors!” They used our software with 5 genes that were part of their project, and it worked amazingly well & without any bug. |
<br> | <br> | ||
<br> | <br> | ||
− | Kyle from <b>iGEM Washington University, St. Louis</b> said, | + | Kyle from <b>iGEM Washington University, St. Louis</b> said, “The tool is easy to use and well outlined.” This software would have helped them catch that they initially forgot to add the BioBrick prefix and suffix to their gene sequence!<br> |
− | <B>iGEM ECUST</B> said, | + | <B>iGEM ECUST</B> said, “BBrickIt is a useful tool for iGEM teams in producing complete BioBricked part and is also very efficient.” |
<br> | <br> | ||
<br> | <br> | ||
Line 136: | Line 136: | ||
<br> | <br> | ||
In the second collaboration activity, Tec de Monterrey Campus Guadalajara sent out requests to make a sign that said how far we were from Giant jamboree (Boston) in km along with the phrase #ScienceEverywhere. Then they wanted us to take a picture of one of our team members holding the sign board and send it to them. | In the second collaboration activity, Tec de Monterrey Campus Guadalajara sent out requests to make a sign that said how far we were from Giant jamboree (Boston) in km along with the phrase #ScienceEverywhere. Then they wanted us to take a picture of one of our team members holding the sign board and send it to them. | ||
− | Our | + | Our PI, Dr. Shalini Deb and Dr. Suruchi Rao performed this fun activity at the David Sassoon Library, a heritage site in Colaba, Mumbai. |
</p> | </p> | ||
Line 145: | Line 145: | ||
<p> | <p> | ||
<p> | <p> | ||
− | Team IIT-Madras is working towards spreading | + | Team IIT-Madras is working towards spreading awareness about synthetic biology to as many people as possible, disregarding the barriers of their native language. To do so they have created a series of educational videos which they have translated to many regional languages for people all over the world. In collaboration with them, we contributed by translating their videos to Marathi and Urdu, two commonly spoken languages in our country, India. It was a fun and enriching experience! Find the Urdu video <a href="https://www.youtube.com/watch?v=ZHIKLJsoZHY&index=20&list=PLIq5f_-wcTEX0dmUNOtifFF61GtxxboiH"><u>here</u></a>and Marathi video <a href="https://www.youtube.com/watch?v=yW2BJYghQ2s&list=PLIq5f_-wcTEXhMGPQiPyFT70r7yOQqfIE"><u>here</u></a>. |
</p> | </p> | ||
Line 154: | Line 154: | ||
<p> | <p> | ||
<br> | <br> | ||
− | NYU Abu Dhabi came up with the very creative idea of explaining | + | NYU Abu Dhabi came up with the very creative idea of explaining the concepts and applications of synthetic biology to the world using simple, interactive animated sketches. They aimed at making a collaborative educational playlist with videos from teams all over the world, with the science sketches explaining about their projects and/or the scientific principle behind their project. Towards this collaboration, we made our very own sketch video describing our project and its applications. |
<br> | <br> | ||
<br> | <br> | ||
Line 168: | Line 168: | ||
<img style="padding-left: 30px;" id="teamlogo-leftIISERM" src="https://static.igem.org/mediawiki/2018/2/2d/T--ICT-Mumbai--IISER_Mohali_Logo.png"></img> | <img style="padding-left: 30px;" id="teamlogo-leftIISERM" src="https://static.igem.org/mediawiki/2018/2/2d/T--ICT-Mumbai--IISER_Mohali_Logo.png"></img> | ||
<p> | <p> | ||
− | Collaboration with IISER Mohali was focused on sharing valuable local information | + | Collaboration with IISER Mohali was focused on sharing valuable local information pertaining to our project. IISER Mohali gave us information about the farms, type of crops grown, amount of fertilizers used by farmers and common diseases seen in crops. They also informed us about the knowledge of phosphate solubilizing bacteria in the farming circle. They asserted that plant disease is not a problem for farmers but weeds are. Also they informed us that there is no knowledge of phosphate solubilizing bacteria among farmers. Their knowledge was indeed helpful in our project. |
</p> | </p> | ||
Line 196: | Line 196: | ||
<p> | <p> | ||
Team HAFS is working towards finding optimal solution to diabetes. As a collaboration activity, they expected to collect healthy recipes from all around the world. | Team HAFS is working towards finding optimal solution to diabetes. As a collaboration activity, they expected to collect healthy recipes from all around the world. | ||
− | ICT-Mumbai participated in this activity. We shared the recipe of Beetroot Raita, which is very commonly prepared in Maharashtrian households. The main ingredient, | + | ICT-Mumbai participated in this activity. We shared the recipe of 'Beetroot Raita', which is very commonly prepared in Maharashtrian households. The main ingredient, 'beetroot, has been found to have many health benefits such as lowering blood sugar, detoxification to name a few. This very easy to make, and very tasty at the same time, recipe was an excellent contribution to the healthy recipe initiative of iGEM team HAFS. |
</p> | </p> | ||
Line 206: | Line 206: | ||
<img style="padding-left: 30px; padding-top: 50px; padding-bottom: 50px;" id="teamlogo-rightcarroll" src="https://static.igem.org/mediawiki/2018/7/73/T--ICT-Mumbai--Carroll_logo.gif"></img> | <img style="padding-left: 30px; padding-top: 50px; padding-bottom: 50px;" id="teamlogo-rightcarroll" src="https://static.igem.org/mediawiki/2018/7/73/T--ICT-Mumbai--Carroll_logo.gif"></img> | ||
<p> | <p> | ||
− | Team | + | Team US AFRL CarrollHS had designed 2 bacterium cartoons called “Mike the Microbe” and his friend “Chia the Chitanase”, they requested us to print the two microbes and take our pictures with them. |
It was fun taking pictures with the two. | It was fun taking pictures with the two. | ||
</p> | </p> |
Revision as of 15:21, 15 October 2018
Collaborations
BBrickIt!
This year, at iGEM Team ICT Mumbai, we developed an easy-to-use tool to BioBrick DNA parts. We call it BBrickIt! Based on our experience while biobricking our parts, we found ourselves alternating between many programs as well as the task of manually adding the prefix and suffix based on several criteria as defined by the RFC10 standard. We therefore decided to develop a software that would enable a user to perform all actions required for biobricking their standards in a single interface. More information about our software can be found here. We contacted this year's iGEM teams and requested them to try out the software and provide their feedback and suggestions.
Feedback from iGEM teams:
Many teams asked us to make a comprehensive user manual for this software and without any delay we created one and shared with all of them. The user manual can be accessed on our software page here.
Also, initially, we shared an .exe file on Github, which worked only on Windows operating system. Many teams use MacOS as their major operating system. Taking their suggestions into account, we immediately started working on Mac version of the software. Now MacOS version of BBrickIt is also available in GitHub repository.
Reviews of BBrickIt:
Numerous teams tried out our software and we got superb responses from many of them.
Kalyani from iGEM UCSD said commended our software saying, “Amazing Work!”
iGEM IISER Kolkata were extremely happy to “bypass the hectic job of having to think of prefix and suffix sites, scars, illegal sites etc. before planning to clone anything in the standard vectors!” They used our software with 5 genes that were part of their project, and it worked amazingly well & without any bug.
Kyle from iGEM Washington University, St. Louis said, “The tool is easy to use and well outlined.” This software would have helped them catch that they initially forgot to add the BioBrick prefix and suffix to their gene sequence!
iGEM ECUST said, “BBrickIt is a useful tool for iGEM teams in producing complete BioBricked part and is also very efficient.”
Feedback
Many teams asked us to make a comprehensive user manual for this software and without any delay we created one and shared with all of them. The user manual can be accessed on our software page here.
Also, initially, we shared an .exe file on Github, which worked only on Windows operating system. Many teams use MacOS as their major operating system. Taking their suggestions into account, we immediately started working on Mac version of the software. Now MacOS version of BBrickIt is also available in GitHub repository.
Human Practices: iGEM WashU
Team WashU is working towards engineering yeast to produce a wheat rust resistance protein. As a collaboration activity, they expected to collect responses from variety of wheat farmers across the world. We helped them with relevant data from India. During one of our IHP visits, our team interacted with wheat farmers and collected responses to the specific questions sent by the WashU team. Team also provided the contacts of some farmers in India as part of the collaboration activity, thus helping them to improve their network of farmers and gain information about specifics of damage caused by wheat rust and their preventive measures.
Modelling and distance from Jamboree: iGEM Tec Monterrey
Before going to actual in vitro studies, we wanted to check how our design of oscillatory circuit works in silico. We had already prepared a stochastic model of the circuit, but we wanted to verify it from experts.
We had a discussion with iGEM Tec Monterrey to discuss about the project earlier in this iGEM Season and they helped us out with our modelling. They verified our program and equations for us, and suggested the concepts such as leakage transcription which we missed to take into account. Their help was very valuable in terms of refinement of modelling of our initial circuit design.
Even though we were not able to gather the experimental data and decided to go about designing a different circuit altogether, conversations with iGEM Tec Monterrey were highly informative and educative for our modelling experience.
In the second collaboration activity, Tec de Monterrey Campus Guadalajara sent out requests to make a sign that said how far we were from Giant jamboree (Boston) in km along with the phrase #ScienceEverywhere. Then they wanted us to take a picture of one of our team members holding the sign board and send it to them.
Our PI, Dr. Shalini Deb and Dr. Suruchi Rao performed this fun activity at the David Sassoon Library, a heritage site in Colaba, Mumbai.
Language Project: IIT-Madras
Team IIT-Madras is working towards spreading awareness about synthetic biology to as many people as possible, disregarding the barriers of their native language. To do so they have created a series of educational videos which they have translated to many regional languages for people all over the world. In collaboration with them, we contributed by translating their videos to Marathi and Urdu, two commonly spoken languages in our country, India. It was a fun and enriching experience! Find the Urdu video hereand Marathi video here.
Science Sketch: NYU Abu Dhabi
NYU Abu Dhabi came up with the very creative idea of explaining the concepts and applications of synthetic biology to the world using simple, interactive animated sketches. They aimed at making a collaborative educational playlist with videos from teams all over the world, with the science sketches explaining about their projects and/or the scientific principle behind their project. Towards this collaboration, we made our very own sketch video describing our project and its applications.
Human Practices: IISER Mohali
Collaboration with IISER Mohali was focused on sharing valuable local information pertaining to our project. IISER Mohali gave us information about the farms, type of crops grown, amount of fertilizers used by farmers and common diseases seen in crops. They also informed us about the knowledge of phosphate solubilizing bacteria in the farming circle. They asserted that plant disease is not a problem for farmers but weeds are. Also they informed us that there is no knowledge of phosphate solubilizing bacteria among farmers. Their knowledge was indeed helpful in our project.
Displaying our project on a global platform: ECUST China
Wechat Subscription is a platform available to everyone on which we can publish articles called WeChat Push, and Team ECUST is running a subscription about iGEM. Team ECUST in collaboration with us graciously converted our submitted project description to the standard format required by them and published our description as a WeChat Push article. They even translated our article to Chinese. The English version can be found hereand the Chinese version can be found here. In this way, our project reached many people in China.
Showcasing our project and Troubleshooting: IISER-Bhopal
Our team and IISER-Bhopal had a fulfilling collaboration. IISER-Bhopal presented our project at their event: iGEM Day, which aimed to spread awareness about real life world problems and the solutions of different teams around the world. They also helped us with troubleshooting our overlap extension PCR.
Healthy Recipe: iGEM HAFS
Team HAFS is working towards finding optimal solution to diabetes. As a collaboration activity, they expected to collect healthy recipes from all around the world. ICT-Mumbai participated in this activity. We shared the recipe of 'Beetroot Raita', which is very commonly prepared in Maharashtrian households. The main ingredient, 'beetroot, has been found to have many health benefits such as lowering blood sugar, detoxification to name a few. This very easy to make, and very tasty at the same time, recipe was an excellent contribution to the healthy recipe initiative of iGEM team HAFS.
Mike the Microbe: Team US AFRL CarrollHS
Team US AFRL CarrollHS had designed 2 bacterium cartoons called “Mike the Microbe” and his friend “Chia the Chitanase”, they requested us to print the two microbes and take our pictures with them. It was fun taking pictures with the two.
Funniest Failure Experience: FUDAN-China
This year Team Fudan requested us to share the “funniest failure Experience in our experiments” to design their comic brochure aimed to add amusement to lab work and to remind everyone not to make such mistakes. We shared our funniest moment with them.
Surveys
Team iGEM ICT-Mumbai completed the following surveys as a part of collaboration activity:
Team | Survey |
---|---|
IIT Kanpur | To fight water pollution |
UNebraska-Lincoln | Invasive Species |
UCopenhagen | Public engagement of iGEM teams |
TecCEM | Burn General Knowledge |
iGEM Bielefeld-CeBiTec | Dual Use and Dual Use Research of Concern |
SKLMT-China | Chassis Bacteria and Nicotine |
UC San Diego | Creating a better iGEM environment for you |
Uppsala | A better iGEM for future teams! |
Imperial College | Team Communication and Issues |
Thessaloniki | Synthetic Biology |
Pasteur_Paris | Synthetic biology and infectious biofilms |
Tokyo | Suggestions regarding solving food issues |
EPFL | Making Cancer treatment more accessible and less expensive |