Difference between revisions of "Team:Jiangnan China/Results"

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<h1>Results</h1>
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<p>Here you can describe the results of your project and your future plans. </p>
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<h3>What should this page contain?</h3>
 
<ul>
 
<li> Clearly and objectively describe the results of your work.</li>
 
<li> Future plans for the project. </li>
 
<li> Considerations for replicating the experiments. </li>
 
</ul>
 
</div>
 
  
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    <div class="dcpt3" style="font-size:20px;line-height:1.5;font-family: 'spr';margin-top:-1px; ">
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    <br>
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    &nbsp;&nbsp;&nbsp;&nbsp;Through genomic mutation and high-throughput screening, we obtained a strain <span class="font-italic">L. lactis</span> WH101 with good acid resistance at pH 5.0 from 35,000 strains. Next, we compared the NZ9000 and WH101 by transcriptomics analysis and mathematical model and obtain key acid resistant components—<span class="font-italic">msmK</span> gene.<br>
 +
    &nbsp;&nbsp;&nbsp;&nbsp;The survival rate of <span class="font-italic">L.lactis</span> NZ3900/pNZ8149-<span class="font-italic">msmK</span> and <span class="font-italic">L.lactis</span> NZ3900/pNZ8149 in acid stress result shows that <span class="font-italic">msmK</span> is an effective anti-acid gene, which can make the recombinant strain has 213-flood higher survival rate than parent one after 3 hours at pH 4.0.<br><br>
  
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    <div align="center">
 +
      <img src="https://static.igem.org/mediawiki/2018/6/68/T--jiangnan_china--wet--5.png" width="80%" >
 +
    </div>
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    <div style="text-align:center;"><strong >Fig 1</strong> Number of colonies at acid stress (pH 4.0).</div>
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    <br>
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    <div align="center">
 +
      <img src="https://static.igem.org/mediawiki/2018/0/0f/T--jiangnan_china--wet--6.png" width="60%" >
 +
    </div>
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    <div style="text-align:center;"><strong >Fig 2</strong> Survival rate at acid stress (pH 4.0).</div><br>
 +
   
 +
    &nbsp;&nbsp;&nbsp;&nbsp;As for the composite part <span class="font-italic">msmK</span>-<span class="font-italic">cspD2</span>,The strain <span class="font-italic">Lactococcus lactis</span> NZ3900/pNZ8149-<span class="font-italic">msmK</span>-<span class="font-italic">cspD2</span> and <span class="font-italic">Lactococcus lactis</span> NZ3900/pNZ8149 were tested for acid resistance and cold resistance.<br><br><br>
  
<div class="column two_thirds_size" >
 
<h3>Describe what your results mean </h3>
 
<ul>
 
<li> Interpretation of the results obtained during your project. Don't just show a plot/figure/graph/other, tell us what you think the data means. This is an important part of your project that the judges will look for. </li>
 
<li> Show data, but remember all measurement and characterization data must be on part pages in the Registry. </li>
 
<li> Consider including an analysis summary section to discuss what your results mean. Judges like to read what you think your data means, beyond all the data you have acquired during your project. </li>
 
</ul>
 
</div>
 
  
  
<div class="clear extra_space"></div>
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    &nbsp;&nbsp;&nbsp;&nbsp;<strong><font size="5">Acid resistance</font></strong><br><br>
 +
   
 +
    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Deal with the samples under pH 4.0 with nisin as an inducer.<br>
 +
    <br>
 +
    <div align="center">
 +
      <img src="https://static.igem.org/mediawiki/2018/6/62/T--jiangnan_china--wet--7.png" width="80%" >
 +
    </div>
 +
    <div style="text-align:center;"><strong >Fig 3</strong> Number of colonies at acid stress (pH 4.0).<br><br></div>
 +
    <div align="center">
 +
      <img src="https://static.igem.org/mediawiki/2018/7/71/T--jiangnan_china--wet--8.png" width="60%" >
 +
    </div>
 +
    <div style="text-align:center;"><strong >Fig 4</strong> Survival rate at acid stress (pH4.0).<br><br></div>
 +
    &nbsp;&nbsp;&nbsp;&nbsp;The result shows that composite part can make the recombinant strain has 243-fold higher survival rate than parent one under acid stress.<br>
 +
    <div align="center">
 +
      <img src="https://static.igem.org/mediawiki/2018/9/9f/T--jiangnan_china--wet--9.png" width="60%" >
 +
    </div>
 +
    <div style="text-align:center;"><strong >Fig 5</strong> Electron microscopy of <span class="font-italic">L.lactis</span> NZ3900/pNZ8149-<span class="font-italic">msmk-cspD2-gfp</span> and <span class="font-italic">L.lactis</span> NZ3900/pNZ8149 before and after acid stress.<br><br></div>
 +
    &nbsp;&nbsp;&nbsp;&nbsp;Before the acid stress, the cell structure of the control strain and the recombinant strain remained intact. After 3 h of pH 4.0 stress, the cell membrane thickness became thinner and the surface became rough, and the cell membrane of some control strains ruptured. In comparison, the cell structure of the recombinant strain remains more intact, thereby effectively reducing the damage caused by acid stress on the cells.<br><br>
 +
    &nbsp;&nbsp;&nbsp;&nbsp;<strong><font size="5">Cold resistance </font></strong><br>
 +
    &nbsp;&nbsp;&nbsp;&nbsp;<span class="font-italic">L.lactis</span> NZ3900/pNZ8149-<span class="font-italic">msmk-cspD2-gfp</span> and <span class="font-italic">L.lactis</span> NZ3900/pNZ8149 strains were inoculated with 4% inoculation. When cultured at 30 °C for 2.5 h (OD=0.35), add 0, 0.5 ng/mL of Nisin, and then culture for 8 ∼ 10 h (OD=0.8), centrifuge at 4000 r/min. Resuspend them in the same volume of fresh M17 medium and count the number of colonies. Four freeze-thaw stimulations were performed on all samples by 1 mL of the sample after counting, and placed in a refrigerator at −20 °C to cool rapidly, frozen for 24 h, then slowly frozen at 4 min and 30 °C. Count separately and calculate the survival rate.<br><br>
 +
    <div align="center">
 +
      <img src="https://static.igem.org/mediawiki/2018/f/fb/T--jiangnan_china--wet--10.jpg" width="50%" >
 +
    </div>
 +
    <div style="text-align:center;"><strong >Fig 6</strong> The Comparison curve of survival rate under cold stress.<br><br></div>
 +
    &nbsp;&nbsp;&nbsp;&nbsp;After 4 consecutive repeated freeze-thaw tests, the recombinant strain was 47.5 times more viable than the control strain, indicating the antifreeze survival rate of the strain with increased overexpression of <span class="font-italic">cspD2</span>.<br><br>
 +
    <div align="center">
 +
      <img src="https://static.igem.org/mediawiki/2018/b/b7/T--jiangnan_china--wet--11.png" width="60%" >
 +
    </div>
 +
    <div style="text-align:center;"><strong >Fig 7</strong> Electron microscopy before and after repeated freezing and thawing.<br><br></div>
 +
    &nbsp;&nbsp;&nbsp;&nbsp;Before freezing and thawing, the cell structure of the control strain and the recombinant strain remained intact. After repeated freezing and thawing for 4 times, the cell membrane of the cell became thin and rough, and some intracellular substances overflowed. In comparison, the cell structure of the recombinant strain remains more intact, and the damage of the cell membrane is alleviated, thereby effectively reducing the damage caused by freezing stress on the cells.<br>
  
 +
   
 +
   
 +
    <br>
 +
    </div>
  
  
<div class="column two_thirds_size" >
 
<h3> Project Achievements </h3>
 
  
<p>You can also include a list of bullet points (and links) of the successes and failures you have had over your summer. It is a quick reference page for the judges to see what you achieved during your summer.</p>
 
  
<ul>
 
<li>A list of linked bullet points of the successful results during your project</li>
 
<li>A list of linked bullet points of the unsuccessful results during your project. This is about being scientifically honest. If you worked on an area for a long time with no success, tell us so we know where you put your effort.</li>
 
</ul>
 
  
</div>
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 +
     
  
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<div class="column third_size" >
 
<div class="highlight decoration_A_full">
 
<h3>Inspiration</h3>
 
<p>See how other teams presented their results.</p>
 
<ul>
 
<li><a href="https://2014.igem.org/Team:TU_Darmstadt/Results/Pathway">2014 TU Darmstadt </a></li>
 
<li><a href="https://2014.igem.org/Team:Imperial/Results">2014 Imperial </a></li>
 
<li><a href="https://2014.igem.org/Team:Paris_Bettencourt/Results">2014 Paris Bettencourt </a></li>
 
</ul>
 
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Revision as of 11:27, 16 October 2018


    Through genomic mutation and high-throughput screening, we obtained a strain L. lactis WH101 with good acid resistance at pH 5.0 from 35,000 strains. Next, we compared the NZ9000 and WH101 by transcriptomics analysis and mathematical model and obtain key acid resistant components—msmK gene.
    The survival rate of L.lactis NZ3900/pNZ8149-msmK and L.lactis NZ3900/pNZ8149 in acid stress result shows that msmK is an effective anti-acid gene, which can make the recombinant strain has 213-flood higher survival rate than parent one after 3 hours at pH 4.0.

Fig 1 Number of colonies at acid stress (pH 4.0).

Fig 2 Survival rate at acid stress (pH 4.0).

    As for the composite part msmK-cspD2,The strain Lactococcus lactis NZ3900/pNZ8149-msmK-cspD2 and Lactococcus lactis NZ3900/pNZ8149 were tested for acid resistance and cold resistance.


    Acid resistance

        Deal with the samples under pH 4.0 with nisin as an inducer.

Fig 3 Number of colonies at acid stress (pH 4.0).

Fig 4 Survival rate at acid stress (pH4.0).

    The result shows that composite part can make the recombinant strain has 243-fold higher survival rate than parent one under acid stress.
Fig 5 Electron microscopy of L.lactis NZ3900/pNZ8149-msmk-cspD2-gfp and L.lactis NZ3900/pNZ8149 before and after acid stress.

    Before the acid stress, the cell structure of the control strain and the recombinant strain remained intact. After 3 h of pH 4.0 stress, the cell membrane thickness became thinner and the surface became rough, and the cell membrane of some control strains ruptured. In comparison, the cell structure of the recombinant strain remains more intact, thereby effectively reducing the damage caused by acid stress on the cells.

    Cold resistance
    L.lactis NZ3900/pNZ8149-msmk-cspD2-gfp and L.lactis NZ3900/pNZ8149 strains were inoculated with 4% inoculation. When cultured at 30 °C for 2.5 h (OD=0.35), add 0, 0.5 ng/mL of Nisin, and then culture for 8 ∼ 10 h (OD=0.8), centrifuge at 4000 r/min. Resuspend them in the same volume of fresh M17 medium and count the number of colonies. Four freeze-thaw stimulations were performed on all samples by 1 mL of the sample after counting, and placed in a refrigerator at −20 °C to cool rapidly, frozen for 24 h, then slowly frozen at 4 min and 30 °C. Count separately and calculate the survival rate.

Fig 6 The Comparison curve of survival rate under cold stress.

    After 4 consecutive repeated freeze-thaw tests, the recombinant strain was 47.5 times more viable than the control strain, indicating the antifreeze survival rate of the strain with increased overexpression of cspD2.

Fig 7 Electron microscopy before and after repeated freezing and thawing.

    Before freezing and thawing, the cell structure of the control strain and the recombinant strain remained intact. After repeated freezing and thawing for 4 times, the cell membrane of the cell became thin and rough, and some intracellular substances overflowed. In comparison, the cell structure of the recombinant strain remains more intact, and the damage of the cell membrane is alleviated, thereby effectively reducing the damage caused by freezing stress on the cells.

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