Difference between revisions of "Team:Jiangnan China"

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  <title>Team:jiangnan_China-2018</title>
  
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<h1> Welcome to iGEM 2018! </h1>
 
<p>Your team has been approved and you are ready to start the iGEM season! </p>
 
  
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<h3>Before you start</h3>
 
<p> Please read the following pages:</p>
 
<ul>
 
<li>  <a href="https://2018.igem.org/Competition">Competition Hub</a> </li>
 
<li> <a href="https://2018.igem.org/Competition/Deliverables/Wiki">Wiki Requirements page</a></li>
 
<li> <a href="https://2018.igem.org/Resources/Template_Documentation">Template documentation</a></li>
 
</ul>
 
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<h3> Styling your wiki </h3>
 
<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
 
<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>
 
  
</div>
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          <li class="dropdown open"><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="true" id="lalala" style="padding: 0px 13px; height: 40px;">Team<span class="caret"></span></a>
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          <ul class="dropdown-menu" style="z-index:1;">
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Team" style="padding: 10px 13px 0px; height: 40px;">Team Members</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Collaborations" style="padding: 10px 13px 0px; height: 40px;">Collaborations</a></li>
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          </ul>
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        </li>
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        <li class="dropdown open"><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="true" id="lalala" style="padding: 0px 13px; height: 40px;">Project<span class="caret"></span></a>
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          <ul class="dropdown-menu" style="z-index:1;">
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Description" style="padding: 10px 13px 0px; height: 40px;">Description</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Design" style="padding: 10px 13px 0px; height: 40px;">Design</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Experiments" style="padding: 10px 13px 0px; height: 40px;">Experiments</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Notebook" style="padding: 10px 13px 0px; height: 40px;">Notebook</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Interlab" style="padding: 10px 13px 0px; height: 40px;">Interlab</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Model" style="padding: 10px 13px 0px; height: 40px;">Model</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Results" style="padding: 10px 13px 0px; height: 40px;">Results</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Demonstrate" style="padding: 10px 13px 0px; height: 40px;">Demonstrate</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Improve" style="padding: 10px 13px 0px; height: 40px;">Improve</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Attributions" style="padding: 10px 13px 0px; height: 40px;">Attributions</a></li>
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          </ul>
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        </li>
  
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        <li class="dropdown open"><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="true" id="lalala" style="padding: 0px 13px; height: 40px;">Parts<span class="caret"></span></a>
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          <ul class="dropdown-menu" style="z-index:1;">
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Parts" style="padding: 10px 13px 0px; height: 40px;">Parts Overview</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Basic_Part" style="padding: 10px 13px 0px; height: 40px;">Basic Parts</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Composite_Part" style="padding: 10px 13px 0px; height: 40px;">Composite Parts</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Patr_Collection" style="padding: 10px 13px 0px; height: 40px;">Part Collection</a></li>
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          </ul>
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        </li>
  
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        <li><a href="https://2018.igem.org/Team:jiangnan_China/Safety" id="lalala class="dropdown open style="padding: 0px 13px; height: 40px;">Safety  </a></li>
  
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        <li class="dropdown open"><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="true" id="lalala" style="padding: 0px 13px; height: 40px;">Human Practices<span class="caret"></span></a>
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          <ul class="dropdown-menu" style="z-index:1;">
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Human_Practices" style="padding: 10px 13px 0px; height: 40px;">Human Practices</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Public_Engagement" style="padding: 10px 13px 0px; height: 40px;">Edu&Eng</a></li>
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          </ul>
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        </li>
  
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        <li class="dropdown open"><a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="true" id="lalala" style="padding: 0px 13px; height: 40px;">Awards<span class="caret"></span></a>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Applied_Design" style="padding: 10px 13px 0px; height: 40px;">Applied Design</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Entrepreneurship" style="padding: 10px 13px 0px; height: 40px;">Entrepreneurship</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Hardware" style="padding: 10px 13px 0px; height: 40px;">Hardware</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Measurement" style="padding: 10px 13px 0px; height: 40px;">Measurement</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Model" style="padding: 10px 13px 0px; height: 40px;">Model</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Plant" style="padding: 10px 13px 0px; height: 40px;">Plant</a></li>
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            <li><a href="https://2018.igem.org/Team:jiangnan_China/Software" style="padding: 10px 13px 0px; height: 40px;">Software</a></li>
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          </ul>
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        </li>
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      </ul>
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    </div>
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  </div>
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</nav>
  
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<!-- Intro Header -->
  
  
<div class="column third_size" >
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<header class="masthead">
  
<h3> Uploading pictures and files </h3>
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  <div class="intro-body">
<p> You must upload any pictures and files to the iGEM 2018 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. </p>
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              <h1>
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                <span class="site-description">jiangnan-China 2018</span>
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              </h1>
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<p>When you upload, set the "Destination Filename" to <b> T--YourOfficialTeamName--NameOfFile.jpg</b>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
 
  
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UPLOAD FILES
 
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<section class="content-section text-center" id ="des" >
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        <h2  style="color:#000" >Description</h2>
 +
        <h5 class="text-left " style="color:#000" >  Lactic acid bacteria (LAB) are a group of Gram-positive, low GC content bacteria with lactic acid as their main acidic fermentation product. Moreover, LAB are generally recognized as safe (GRAS) microorganisms due to its health-promoting and probiotic properties. In food industry, LAB are widely used for food and beverage fermentation, bacteriocins and exopolysaccharides. In addition, as cell factories, LAB are the most promising microorganisms to produce various chemicals, including lactic acid, vitamins and antimicrobial peptide (nisin).
 +
However, LAB suffer from various stress conditions including acid, osmotic and oxygen during fermentation processing [1]. Among these environmental stresses, acid stress is one of the important survival challenges. During fermentation, the continuous accumulation of the target products causes the decrease of environmental pH, and the activity of intracellular enzymes are inhibited [2]. Moreover, this will affect the normal growth and metabolism of microbial cells.
 +
In response to acid stress, microbial cells have evolved various anti-acid stress response mechanisms including the maintenance of intracellular pH homeostasis, cell
 +
membrane functionality, non-coding sRNAs and stress response proteins [3]. On these basis, different kinds of anti-acid components have been elucidated through the application of system biology technologies.
 +
In previous study, genome mutagenesis combined with high-throughput technologies was performed to screen acid tolerance strain. The mutant strain L. lactis WH101 showed remarkably 16000-fold higher survival rate than that of the parent strain after 5 h of acid shock at pH 4.0 . Meanwhile, it maintained higher ATP, NH4+ and intracellular pH levels compared to parent strain during acid stress. Next, comparative transcriptomics analysis was performed on L. lactis WH101 and L. lactis NZ9000 to investigated the response mechanisms of microbial cells during acid stress. Several interesting acid tolerance mechanisms were proposed. Carbohydrate metabolism and sugar transporters were strengthened to provide more energy. Amino acids metabolism and transporters were regulated to maintain intracellular pHi homeostasis and generate ATP. Fatty acid metabolism was also regulated to enhance the acid tolerance of cells. Moreover, transcriptional regulators and stress response proteins were also found to be related to acid stress [4]. Based on the proposed acid tolerance mechanisms, one anti-acid component was selected.
 +
In this study, we constructed MsmK overexpression strains in L. lactis NZ3900 which was named L. lactis NZ3900 (MsmK). Next, the gene encoding the fluorescence protein was co-expressed with msmK in L. lactis NZ3900,resulting in L. lactis NZ3900 (MsmK/GFP). The fluorescence intensity was used to characterize the survival rates of the engineered strain in simulated human body environment (pH 4.0) [6].
 +
</h5>
 +
        <h3 style="color:#000">Reference:</h3>
 +
        <h5 style="color:#000">1.  Nezhad MH, Hussain MA, Britz ML. 2015. Stress responses in probiotic Lactobacillus casei. Crit Rev Food Sci Nutr 55:740-749.</h5>
 +
      <h5 style="color:#000">2.  Wu CD, Huang J, Zhou RQ. 2014. Progress in engineering acid stress resistance of lactic acid bacteria. Appl Microbiol Biotechnol 98:1055-1063.</h5>
 +
      <h5 style="color:#000">3.  Zhang J, Caiyin Q, Feng WJ, Zhao XL, Qiao B, Zhao GR, Qiao JJ. 2016. Enhance nisin yield via improving acid-tolerant capability of Lactococcus lactis F44. Sci Rep 6:12.</h5>
 +
      <h5 style="color:#000">4.  Martani F, Berterame NM, Branduardi P. 2017. Microbial stress: From molecules to systems (Sitges, November 2015). New Biotechnology 35:30-34.</h5>
 +
      <h5 style="color:#000">5.  Bosma EF, Forster J, Nielsen AT. 2017. Lactobacilli and pediococci as versatile cell factories - Evaluation of strain properties and genetic tools. Biotechnol Adv 35:419-442.</h5>
 +
      <h5 style="color:#000">6.  Teusink B, Bachmann H, Molenaar D. 2011. Systems biology of lactic acid bacteria: a critical review. Microbial Cell Factories 10:17.
 +
      </h5>
 +
    </div>
 +
  </div>
 
</div>
 
</div>
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</section>
  
<div class="column third_size" >
 
<h3> Wiki template information </h3>
 
<p>We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the <a href="https://2018.igem.org/Judging/Pages_for_Awards">Pages for awards</a> link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!</p>
 
  
</div>
 
  
  
  
<div class="column third_size" >
 
<div class="highlight decoration_B_full">
 
<h3> Editing your wiki </h3>
 
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>
 
<p>Use WikiTools - Edit in the black menu bar to edit this page</p>
 
  
<div class="button_link">
+
<!-- Remix Section -->
<a href="https://2018.igem.org/wiki/index.php?title=Team:Jiangnan_China&action=edit">  
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<section id="remix" class="remix-section text-center">
EDIT PAGE
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</a>
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    <div class="row">
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</div>
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</section>
  
  
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<!-- Footer -->
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<footer>
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    <p>Copyright &copy; jiangnan-China 2018</p>
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<script src="vendor/bootstrap/js/bootstrap.min.js"></script>
  
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<div class="clear extra_space"></div>
 
<div class="line_divider"></div>
 
<div class="clear extra_space"></div>
 
 
 
 
<div class="column two_thirds_size" >
 
<h3>Tips</h3>
 
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
 
<ul>
 
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
 
<li>Be clear about what you are doing and how you plan to do this.</li>
 
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
 
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
 
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
 
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2018.igem.org/Calendar">iGEM 2018 calendar</a> </li>
 
<li>Have lots of fun! </li>
 
</ul>
 
</div>
 
 
 
<div class="column third_size">
 
<div class="highlight decoration_A_full">
 
<h3>Inspiration</h3>
 
<p> You can also view other team wikis for inspiration! Here are some examples:</p>
 
<ul>
 
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
 
<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
 
<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
 
<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
 
<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
 
<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
 
</ul>
 
</div>
 
</div>
 
  
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Revision as of 09:20, 28 June 2018

<!DOCTYPE html> Team:jiangnan_China-2018

jiangnan-China 2018

Description

Lactic acid bacteria (LAB) are a group of Gram-positive, low GC content bacteria with lactic acid as their main acidic fermentation product. Moreover, LAB are generally recognized as safe (GRAS) microorganisms due to its health-promoting and probiotic properties. In food industry, LAB are widely used for food and beverage fermentation, bacteriocins and exopolysaccharides. In addition, as cell factories, LAB are the most promising microorganisms to produce various chemicals, including lactic acid, vitamins and antimicrobial peptide (nisin). However, LAB suffer from various stress conditions including acid, osmotic and oxygen during fermentation processing [1]. Among these environmental stresses, acid stress is one of the important survival challenges. During fermentation, the continuous accumulation of the target products causes the decrease of environmental pH, and the activity of intracellular enzymes are inhibited [2]. Moreover, this will affect the normal growth and metabolism of microbial cells. In response to acid stress, microbial cells have evolved various anti-acid stress response mechanisms including the maintenance of intracellular pH homeostasis, cell membrane functionality, non-coding sRNAs and stress response proteins [3]. On these basis, different kinds of anti-acid components have been elucidated through the application of system biology technologies. In previous study, genome mutagenesis combined with high-throughput technologies was performed to screen acid tolerance strain. The mutant strain L. lactis WH101 showed remarkably 16000-fold higher survival rate than that of the parent strain after 5 h of acid shock at pH 4.0 . Meanwhile, it maintained higher ATP, NH4+ and intracellular pH levels compared to parent strain during acid stress. Next, comparative transcriptomics analysis was performed on L. lactis WH101 and L. lactis NZ9000 to investigated the response mechanisms of microbial cells during acid stress. Several interesting acid tolerance mechanisms were proposed. Carbohydrate metabolism and sugar transporters were strengthened to provide more energy. Amino acids metabolism and transporters were regulated to maintain intracellular pHi homeostasis and generate ATP. Fatty acid metabolism was also regulated to enhance the acid tolerance of cells. Moreover, transcriptional regulators and stress response proteins were also found to be related to acid stress [4]. Based on the proposed acid tolerance mechanisms, one anti-acid component was selected. In this study, we constructed MsmK overexpression strains in L. lactis NZ3900 which was named L. lactis NZ3900 (MsmK). Next, the gene encoding the fluorescence protein was co-expressed with msmK in L. lactis NZ3900,resulting in L. lactis NZ3900 (MsmK/GFP). The fluorescence intensity was used to characterize the survival rates of the engineered strain in simulated human body environment (pH 4.0) [6].

Reference:

1. Nezhad MH, Hussain MA, Britz ML. 2015. Stress responses in probiotic Lactobacillus casei. Crit Rev Food Sci Nutr 55:740-749.
2. Wu CD, Huang J, Zhou RQ. 2014. Progress in engineering acid stress resistance of lactic acid bacteria. Appl Microbiol Biotechnol 98:1055-1063.
3. Zhang J, Caiyin Q, Feng WJ, Zhao XL, Qiao B, Zhao GR, Qiao JJ. 2016. Enhance nisin yield via improving acid-tolerant capability of Lactococcus lactis F44. Sci Rep 6:12.
4. Martani F, Berterame NM, Branduardi P. 2017. Microbial stress: From molecules to systems (Sitges, November 2015). New Biotechnology 35:30-34.
5. Bosma EF, Forster J, Nielsen AT. 2017. Lactobacilli and pediococci as versatile cell factories - Evaluation of strain properties and genetic tools. Biotechnol Adv 35:419-442.
6. Teusink B, Bachmann H, Molenaar D. 2011. Systems biology of lactic acid bacteria: a critical review. Microbial Cell Factories 10:17.

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