Difference between revisions of "Team:TecCEM/Experiments"

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<html>
 
<html>
 
<div id="gif-title" class="text-project">
 
<div id="gif-title" class="text-project">
     <img src="http://2018.igi.org/wiki/images/a/aa/T--TecCi--Cells.gif" alt="Cell Gif">
+
     <img src="https://static.igem.org/mediawiki/2018/a/aa/T--TecCi--Cells.gif" alt="Cell Gif">
 
     <h1>Experiments</h1>
 
     <h1>Experiments</h1>
 
</div>
 
</div>
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             <div class="row">
 
             <div class="row">
 
                 <div class="col">
 
                 <div class="col">
                     <a class="btn btn-link text-notebook" data-toggle="collapse" href="#encapsulation" role="button"
+
                     <a class="btn-link text-notebook" data-toggle="collapse" href="#encapsulation" role="button"
 
                         aria-expanded="false" aria-controls="encapsulation">
 
                         aria-expanded="false" aria-controls="encapsulation">
 
                         <h3>Protein encapsulation protocol</h3>
 
                         <h3>Protein encapsulation protocol</h3>
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                             </ul>
 
                             </ul>
 
                         </div>
 
                         </div>
                        <h4>Procedure</h4>
 
 
                         <div class="mb-3">
 
                         <div class="mb-3">
                             <i>
+
                             <h4>Procedure</h4>
                                <h5>Stock solutions</h5>
+
                            <h5><i>Stock solutions</i></h5>
                            </i>
+
 
                             <ol>
 
                             <ol>
 
                                 <li>In a 15 mL Falcon tube add 30 mg of chitosan and 10 mL of distilled water (to get a
 
                                 <li>In a 15 mL Falcon tube add 30 mg of chitosan and 10 mL of distilled water (to get a
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                         </div>
 
                         </div>
 
                         <div class="mb-3">
 
                         <div class="mb-3">
                             <i>
+
                             <h5><i>
                                <h5>Nanoparticle preparation</h5>
+
                                    Nanoparticle preparation
                            </i>
+
                                </i></h5>
 
                             <ol>
 
                             <ol>
 
                                 <li>In a 20 mL beaker add 1 mL of chitosan solution and 100 uL of your protein, stir
 
                                 <li>In a 20 mL beaker add 1 mL of chitosan solution and 100 uL of your protein, stir
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                         </div>
 
                         </div>
 
                         <div class="mb-3">
 
                         <div class="mb-3">
                             <i>
+
                             <h5><i>
                                <h5>Particle collection</h5>
+
                                    Particle collection
                            </i>
+
                                </i></h5>
 
                             <ol>
 
                             <ol>
 
                                 <li>Transfer the mix to 2 1.5 mL Eppendorf tubes.</li>
 
                                 <li>Transfer the mix to 2 1.5 mL Eppendorf tubes.</li>
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                         </div>
 
                         </div>
 
                         <div class="mb-3">
 
                         <div class="mb-3">
                             <i>
+
                             <h5> <i>
                                 <h5>Ti preparation</h5>
+
                                    To preparation
                             </i>
+
                                 </i></h5>
                            <i>To visualize chitosan nanoparticles some previous preparation steps must be carried out
+
                             <p><i>To visualize chitosan nanoparticles some previous preparation steps must be carried
                                (this preparation protocol may vary).</i>
+
                                    out
 +
                                    (this preparation protocol may vary).</i></p>
 
                             <ol>
 
                             <ol>
 
                                 <li>A film of Formvar has to be previously prepared and used to coat a glass slide for
 
                                 <li>A film of Formvar has to be previously prepared and used to coat a glass slide for
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             <div class="row">
 
             <div class="row">
 
                 <div class="col">
 
                 <div class="col">
                     <a class="btn btn-link text-notebook" data-toggle="collapse" href="#encapsulation-efficiency" role="button"
+
                     <a class="btn-link text-notebook" data-toggle="collapse" href="#encapsulation-efficiency" role="button"
 
                         aria-expanded="false" aria-controls="encapsulation-efficiency">
 
                         aria-expanded="false" aria-controls="encapsulation-efficiency">
 
                         <h3>Protein encapsulation efficiency protocol</h3>
 
                         <h3>Protein encapsulation efficiency protocol</h3>
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                             protocol.
 
                             protocol.
 
                         </p>
 
                         </p>
                         <h4>
+
                         <div class="mb-3">
                             <i>
+
                             <h4>
                                 Calibration curve of BSA
+
                                 <i>
                            </i>
+
                                    Calibration curve of BSA
                        </h4>
+
                                </i>
                         <p> BSA Stock solution</p>
+
                            </h4>
                        <ol>
+
                         </div>
                            <li>Prepare 10 mg/mL BSA solution</li>
+
                        <div class="mb-3">
                            <li>Store in ice for further use</li>
+
                            <h5> BSA Stock solution</h5>
                        </ol>
+
                            <ol>
 
+
                                <li>Prepare 10 mg/mL BSA solution</li>
                         <p>Dilutions</p>
+
                                <li>Store in ice for further use</li>
                        <p>
+
                            </ol>
                            Loaded and ipty nanoparticles are prepared under the same conditions (agitation,
+
                        </div>
                            tiperature, pH,
+
                         <div class="mb-3">
                            and reactant concentrations). Thus, we used a sample of ipty encapsulation supernatant as
+
                            <h5>Dilutions</h5>
                            a blank
+
                            <p>
                            to construct a standard curve to estimate protein encapsulation efficiency. Volumes of
+
                                Loaded and ipty nanoparticles are prepared under the same conditions (agitation,
                            supernatant
+
                                tiperature, pH,
                            were mixed with volumes of BSA stock solution to obtain dilutions of known protein
+
                                and reactant concentrations). Thus, we used a sample of ipty encapsulation supernatant
                            concentrations.
+
                                as
                        </p>
+
                                a blank
                        <ol>
+
                                to construct a standard curve to estimate protein encapsulation efficiency. Volumes of
                            <li>Refer to encapsulation protocol to prepare ipty chitosan nanoparticles.</li>
+
                                supernatant
                            <li>Prepare encapsulation solution aliquots.</li>
+
                                were mixed with volumes of BSA stock solution to obtain dilutions of known protein
                            <li>Centrifuge samples after splitting the initial encapsulation volume at 13,400 rpm
+
                                concentrations.
                                for 30
+
                            </p>
                                min.</li>
+
                            <ol>
                            <li>Supernatant will be used to derive the curve. Do not discard.</li>
+
                                <li>Refer to encapsulation protocol to prepare ipty chitosan nanoparticles.</li>
                        </ol>
+
                                <li>Prepare encapsulation solution aliquots.</li>
                        <p><i>Prepare dilutions according to the following table and label each tube. A small-scale
+
                                <li>Centrifuge samples after splitting the initial encapsulation volume at 13,400 rpm
                                procedure
+
                                    for 30
                                was adapted from Sigma Aldrich to perform Bradford assay on the prepared dilutions.</i></p>
+
                                    min.</li>
                        <p><i>
+
                                <li>Supernatant will be used to derive the curve. Do not discard.</li>
                                <b>Table 1.</b> Dilutions to derive a standard curve for encapsulation efficiency
+
                            </ol>
                                quantification
+
                            <p><i>Prepare dilutions according to the following table and label each tube. A small-scale
                            </i></p>
+
                                    procedure
 +
                                    was adapted from Sigma Aldrich to perform Bradford assay on the prepared dilutions.</i></p>
 +
                            <p><i>
 +
                                    <b>Table 1.</b> Dilutions to derive a standard curve for encapsulation efficiency
 +
                                    quantification
 +
                                </i></p>
 +
                        </div>
 
                         <table>
 
                         <table>
 
                             <thead>
 
                             <thead>
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                             </tbody>
 
                             </tbody>
 
                         </table>
 
                         </table>
                         <p>
+
                         <div class="mb-3">
                             Experimental procedure</p>
+
                             <h5>
                        <ol>
+
                                Experimental procedure</h5>
                            <li>Place 6.5 μL of each pattern of BSA (0 mg/mL to 1.4 mg/mL) in sterile 0.6 mL tubes.</li>
+
                            <ol>
                            <li>Add 193.5 μL of Bradford reagent to each tube. The final volume is 200 μL.</li>
+
                                <li>Place 6.5 μL of each pattern of BSA (0 mg/mL to 1.4 mg/mL) in sterile 0.6 mL tubes.</li>
                            <li>Vortex gently.</li>
+
                                <li>Add 193.5 μL of Bradford reagent to each tube. The final volume is 200 μL.</li>
                            <li>Incubate 5-45 min at room tiperature (until a change in color is noticeable).</li>
+
                                <li>Vortex gently.</li>
                            <li>Transfer 50 μL to a spectrophotometer cell.</li>
+
                                <li>Incubate 5-45 min at room tiperature (until a change in color is noticeable).</li>
                            <li>Blank with the tube of null BSA concentration + Bradford reagent.</li>
+
                                <li>Transfer 50 μL to a spectrophotometer cell.</li>
                            <li>Take absorbance at 595 nm for the samples and record it.</li>
+
                                <li>Blank with the tube of null BSA concentration + Bradford reagent.</li>
                            <li>Derive a standard curve for protein concentration in encapsulation supernatant.</li>
+
                                <li>Take absorbance at 595 nm for the samples and record it.</li>
                        </ol>
+
                                <li>Derive a standard curve for protein concentration in encapsulation supernatant.</li>
                        Note: There shouldn’t be a time difference higher than 10 minutes between each read.
+
                            </ol>
                         <h5><i>
+
                            <p><i>Note: There shouldn’t be a time difference higher than 10 minutes between each read.</i></p>
                                Efficiency quantification
+
                         </div>
                            </i></h5>
+
                        <div class="mb-3">
                        <p>
+
                            <h5><i>
                            Refer to protein encapsulation protocol here using BSA.
+
                                    Efficiency quantification
                            NOTE: Calculate initial protein concentration before stirring and record it.
+
                                </i></h5>
                        </p>
+
                            <p>
                        <p>
+
                                Refer to protein encapsulation protocol here using BSA.
                            Experimental procedure</p>
+
                                NOTE: Calculate initial protein concentration before stirring and record it.
                        <ol>
+
                            </p>
                            <li>Prepare eight 1 mL aliquots of loaded chitosan nanoparticles: four ipty, four
+
                            <p>
                                containing
+
                                Experimental procedure</p>
                                the protein of interest.</li>
+
                            <ol>
                            <li>Centrifuge aliquots at 13,400 rpm for 30 min.</li>
+
                                <li>Prepare eight 1 mL aliquots of loaded chitosan nanoparticles: four ipty, four
                            <li>Take 6.5 μL of the supernatant and measure absorbance at 595 nm with 193.5 μL of
+
                                    containing
                                Bradford
+
                                    the protein of interest.</li>
                                reagent. Riiber to incubate this mix at room tiperature 5-45 minutes (until a
+
                                <li>Centrifuge aliquots at 13,400 rpm for 30 min.</li>
                                change of
+
                                <li>Take 6.5 μL of the supernatant and measure absorbance at 595 nm with 193.5 μL of
                                color is noticeable).</li>
+
                                    Bradford
                            <li>Record reads and estimate protein concentration in the supernatant using the
+
                                    reagent. Riiber to incubate this mix at room tiperature 5-45 minutes (until a
                                previously
+
                                    change of
                                derived standard curve.</li>
+
                                    color is noticeable).</li>
                            <li>Calculate encapsulation efficiency at this initial time as follows.</li>
+
                                <li>Record reads and estimate protein concentration in the supernatant using the
                        </ol>
+
                                    previously
 +
                                    derived standard curve.</li>
 +
                                <li>Calculate encapsulation efficiency at this initial time as follows.</li>
 +
                            </ol>
 +
                        </div>
 
                         <div class="text-center">
 
                         <div class="text-center">
 
                             <figure class="figure text-left">
 
                             <figure class="figure text-left">
                                 <img src="http://2018.igi.org/wiki/images/9/99/T--TecCi--Figure5Improvient.png" class="figure-img img-fluid rounded"
+
                                 <img src="https://static.igem.org/mediawiki/2018/9/99/T--TecCEM--Figure5Improvement.png"
                                    alt="IMP-1">
+
                                    class="figure-img img-fluid rounded" alt="IMP-1">
 
                             </figure>
 
                             </figure>
 
                         </div>
 
                         </div>
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             <div class="row">
 
             <div class="row">
 
                 <div class="col">
 
                 <div class="col">
                     <a class="btn btn-link text-notebook" data-toggle="collapse" href="#liberation-and-stability" role="button"
+
                     <a class="btn-link text-notebook" data-toggle="collapse" href="#liberation-and-stability" role="button"
 
                         aria-expanded="false" aria-controls="liberation-and-stability">
 
                         aria-expanded="false" aria-controls="liberation-and-stability">
 
                         <h3>Protein liberation and stability protocol</h3>
 
                         <h3>Protein liberation and stability protocol</h3>
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                             We quantified protein liberation by Bradford assay.
 
                             We quantified protein liberation by Bradford assay.
 
                         </p>
 
                         </p>
                         <p>
+
                         <div class="mb-3">
                             <i>
+
                             <h4> <i>
                                Materials
+
                                    Materials
                            </i>
+
                                </i>
                        </p>
+
                            </h4>
                        <ul>
+
                            <ul>
                            <li>PBS pH 7.4</li>
+
                                <li>PBS pH 7.4</li>
                            <li>Bradford reagent</li>
+
                                <li>Bradford reagent</li>
                        </ul>
+
                            </ul>
                         <p>
+
                         </div>
                             <i>
+
                        <div class="mb-3">
                                 Standard curve derivation
+
                             <h4>
                            </i>
+
                                 <i>
                        </p>
+
                                    Standard curve derivation
                        <ol>
+
                                </i>
                            <li>Use Bradford assay to derive a standard curve for a standard protein (BSA, for
+
                            </h4>
                                instance).
+
                            <ol>
                            </li>
+
                                <li>Use Bradford assay to derive a standard curve for a standard protein (BSA, for
                            <li>Prepare 6 dilutions from a 10 mg/mL stock solution of the standard protein according to
+
                                    instance).
                                the
+
                                </li>
                                table. A small-scale procedure was adapted from Sigma Aldrich to perform Bradford assay
+
                                <li>Prepare 6 dilutions from a 10 mg/mL stock solution of the standard protein
                                on
+
                                    according to
                                the prepared dilutions.
+
                                    the
                            </li>
+
                                    table. A small-scale procedure was adapted from Sigma Aldrich to perform Bradford
                        </ol>
+
                                    assay
                        <p>
+
                                    on
                            <i>
+
                                    the prepared dilutions.
                                <b>Table 1.</b> Dilutions for standard curve derivation using PBS
+
                                </li>
                            </i>
+
                            </ol>
                        </p>
+
                            <p>
 +
                                <i>
 +
                                    <b>Table 1.</b> Dilutions for standard curve derivation using PBS
 +
                                </i>
 +
                            </p>
 +
                        </div>
 
                         <table>
 
                         <table>
 
                             <thead>
 
                             <thead>
Line 544: Line 558:
 
                             </tbody>
 
                             </tbody>
 
                         </table>
 
                         </table>
                         <li>For each dilution mix 6.5 uL of the sample and 193.5 uL of Bradford reactant for a
+
                         <div class="mb-3">
                            final
+
                            <ul>
                            volume of 200 uL and leave it react for 20 minutes (Sigma Aldrich suggests 5-45
+
                                <li>For each dilution mix 6.5 uL of the sample and 193.5 uL of Bradford reactant for a
                            minutes).</li>
+
                                    final
                        <li>Read the absorbance of the riaining dilutions using dilution 0 as blank.</li>
+
                                    volume of 200 uL and leave it react for 20 minutes (Sigma Aldrich suggests 5-45
                        <li>Graph absorbance reads vs concentration.</li>
+
                                    minutes).</li>
                        <li>Use a linear trend to get the equation to compute protein concentration evaluating
+
                                <li>Read the absorbance of the riaining dilutions using dilution 0 as blank.</li>
                            correlation coefficient.</li>
+
                                <li>Graph absorbance reads vs concentration.</li>
                         </ol>
+
                                <li>Use a linear trend to get the equation to compute protein concentration evaluating
                         <i>Protein release behavior</i>
+
                                    correlation coefficient.</li>
                        <ol>
+
                            </ul>
                            <li>Refer to protein encapsulation protocol to prepare enough loaded-nanoparticles for six
+
                         </div>
                                1 mL
+
                         <div class="mb-3">
                                aliquots (some volume is lost in every transfer).</li>
+
                            <h4><i>Protein release behavior</i></h4>
                            <li>Centrifuge the total encapsulation volume at 20000 rpm for 20 minutes.</li>
+
                            <ol>
                            <li>Discard supernatant.</li>
+
                                <li>Refer to protein encapsulation protocol to prepare enough loaded-nanoparticles for
                            <li>Resuspend pellet in a volume of PBS pH 7.4 equal to the original volume.</li>
+
                                    six
                            <i>NOTE: Given the low solubility of chitosan in neutral pH solutions, some protocols
+
                                    1 mL
                                iploy
+
                                    aliquots (some volume is lost in every transfer).</li>
                                mild to moderate sonication to disrupt possible non-dissolved pellet.</i>
+
                                <li>Centrifuge the total encapsulation volume at 20000 rpm for 20 minutes.</li>
                            <li>Prepare aliquots as previously stated.</li>
+
                                <li>Discard supernatant.</li>
                            <li>Refer to protein encapsulation protocol to prepare enough ipty nanoparticles for six 1
+
                                <li>Resuspend pellet in a volume of PBS pH 7.4 equal to the original volume.</li>
                                mL
+
                                <i>NOTE: Given the low solubility of chitosan in neutral pH solutions, some protocols
                                aliquots (some volume is lost in every transfer).</li>
+
                                    iploy
                            <li>Centrifuge the total encapsulation volume at 20000 rpm for 20 minutes.</li>
+
                                    mild to moderate sonication to disrupt possible non-dissolved pellet.</i>
                            <li>Discard supernatant.</li>
+
                                <li>Prepare aliquots as previously stated.</li>
                            <li>Resuspend pellet in a volume of PBS pH 7.4 equal to the original volume.</li>
+
                                <li>Refer to protein encapsulation protocol to prepare enough ipty nanoparticles for
                            <li>Prepare aliquots as previously stated.</li>
+
                                    six 1
                            <li>Label all aliquots to measure thi at time 0, 2, 4, 6, 12, 24, and 48 h. Store at 37 °C
+
                                    mL
                                and
+
                                    aliquots (some volume is lost in every transfer).</li>
                                100 rpm.</li>
+
                                <li>Centrifuge the total encapsulation volume at 20000 rpm for 20 minutes.</li>
                            <li>At the right time, centrifuge the aliquots at 20000 rpm for 20 minutes.</li>
+
                                <li>Discard supernatant.</li>
                            <li>Take 193.5 μL of Bradford reagent and mix with 6.5 μL of centrifugation supernatant.
+
                                <li>Resuspend pellet in a volume of PBS pH 7.4 equal to the original volume.</li>
                                Vortex
+
                                <li>Prepare aliquots as previously stated.</li>
                                gently.</li>
+
                                <li>Label all aliquots to measure thi at time 0, 2, 4, 6, 12, 24, and 48 h. Store at 37
                            <li>Incubate tube at room tiperature for 20 minutes.</li>
+
                                    °C
                            <li>Transfer 50 μL to a spectrophotometer cell.</li>
+
                                    and
                            <li>Measure absorbance and calculate protein concentration in the supernatant using the
+
                                    100 rpm.</li>
                                previously derived standard curve. Blank should be PBS pH 7.4 + Bradford reagent as
+
                                <li>At the right time, centrifuge the aliquots at 20000 rpm for 20 minutes.</li>
                                stated
+
                                <li>Take 193.5 μL of Bradford reagent and mix with 6.5 μL of centrifugation
                                above.</li>
+
                                    supernatant.
                        </ol>
+
                                    Vortex
                         <i>NOTE: to achieve a time-efficient protocol, a previous standardization of protein
+
                                    gently.</li>
                            encapsulation
+
                                <li>Incubate tube at room tiperature for 20 minutes.</li>
                            efficiency is strongly suggested (refer to protein encapsulation efficiency protocol).
+
                                <li>Transfer 50 μL to a spectrophotometer cell.</li>
                            Since
+
                                <li>Measure absorbance and calculate protein concentration in the supernatant using the
                            you already know your protein encapsulation efficiency, protein liberation calculations may
+
                                    previously derived standard curve. Blank should be PBS pH 7.4 + Bradford reagent as
                            be
+
                                    stated
                            performed as follows.</i>
+
                                    above.</li>
 +
                            </ol>
 +
                         </div>
 +
                        <p><i>NOTE: to achieve a time-efficient protocol, a previous standardization of protein
 +
                                encapsulation
 +
                                efficiency is strongly suggested (refer to protein encapsulation efficiency
 +
                                protocol).
 +
                                Since
 +
                                you already know your protein encapsulation efficiency, protein liberation
 +
                                calculations
 +
                                may
 +
                                be
 +
                                performed as follows.</i></p>
 
                     </div>
 
                     </div>
 
                 </div>
 
                 </div>
Line 598: Line 624:
 
             <div class="row">
 
             <div class="row">
 
                 <div class="col">
 
                 <div class="col">
                     <a class="btn btn-link text-notebook" data-toggle="collapse" href="#nanoparticle" role="button"
+
                     <a class="btn-link text-notebook" data-toggle="collapse" href="#nanoparticle" role="button"
 
                         aria-expanded="false" aria-controls="nanoparticle">
 
                         aria-expanded="false" aria-controls="nanoparticle">
 
                         <h3>Nanoparticle stability</h3>
 
                         <h3>Nanoparticle stability</h3>
Line 616: Line 642:
 
                             measurient
 
                             measurient
 
                             equipment, or NanoSight NS300, as we did.</p>
 
                             equipment, or NanoSight NS300, as we did.</p>
                         <i>Transmission electron microscopy</i>
+
                         <div class="mb-3">
                        <ol>
+
                            <h4><i>Transmission electron microscopy</i></h4>
                            <li>Refer to protein encapsulation protocol to prepare a final volume of 2 mL
+
                            <ol>
                                chitosan
+
                                <li>Refer to protein encapsulation protocol to prepare a final volume of 2 mL
                                nanoparticles (loaded or ipty).</li>
+
                                    chitosan
                            <li>Store at the desired conditions.</li>
+
                                    nanoparticles (loaded or ipty).</li>
                            <li>Perform Ti preparation procedure on a 100 μL sample.</li>
+
                                <li>Store at the desired conditions.</li>
                            <li>At relevant times observe to evaluate nanoparticle integrity (size,
+
                                <li>Perform Ti preparation procedure on a 100 μL sample.</li>
                                conglomeration,
+
                                <li>At relevant times observe to evaluate nanoparticle integrity (size,
                                and shape).</li>
+
                                    conglomeration,
                        </ol>
+
                                    and shape).</li>
 
+
                            </ol>
 
+
                        </div>
                         <i>NanoSight</i>
+
                         <div class="mb-3">
                        <ol>
+
                            <h4><i>NanoSight</i></h4>
                            <li>Refer to protein encapsulation protocol to prepare a final volume of 2 mL
+
                            <ol>
                                chitosan
+
                                <li>Refer to protein encapsulation protocol to prepare a final volume of 2 mL
                                nanoparticles (loaded or ipty).</li>
+
                                    chitosan
                            <li>Store at the desired conditions.</li>
+
                                    nanoparticles (loaded or ipty).</li>
                            <li>Dilute samples if required.</li>
+
                                <li>Store at the desired conditions.</li>
                            <li>At relevant times evaluate nanoparticle size distribution (statistical data
+
                                <li>Dilute samples if required.</li>
                                provided in the analysis sheet is useful to evaluate particle behavior).</li>
+
                                <li>At relevant times evaluate nanoparticle size distribution (statistical data
                        </ol>
+
                                    provided in the analysis sheet is useful to evaluate particle behavior).</li>
 
+
                            </ol>
                         <i>NOTE: Some devices like NanoSight NS500 are able to measure Z potential as well.</i>
+
                        </div>
 +
                         <p><i>NOTE: Some devices like NanoSight NS500 are able to measure Z potential as well.</i></p>
 
                     </div>
 
                     </div>
 
                 </div>
 
                 </div>

Revision as of 20:23, 17 October 2018

Cell Gif

Experiments

This is our experiment section. Here we compile important protocols for the development of TecTissue, ranging from our bacterial transformation procedures to our cell proliferation assays. We also address cell culture maintenance and protein loaded chitosan nanoparticles. Here you may find the protocol for our growth factor delivery to damaged cells and how much harm can be inflicted in vitro.

Protocols

Chitosan nanoparticles

Reactants

  • Chitosan low molecular weight from Sigma-Aldrich
  • TPP from Sigma-Aldrich
  • NaOH 1M
  • Acetic acid 1M
  • Distilled water
  • Protein of interest (10 mg/mL)

Procedure

Stock solutions
  1. In a 15 mL Falcon tube add 30 mg of chitosan and 10 mL of distilled water (to get a solution with a concentration of 3 mg/mL).
  2. Add 10 microliters of acetic acid for each mL of chitosan solution to solubilize the chitosan. To adjust the pH acetic acid and NaOH should be used.
  3. NOTE: the pH should be adjusted depending on your protein of interest, taking into account the isoelectric point, always maintaining the chitosan solution positively charged (pH < 6.5) and the protein of interest negatively charged (preferred).
  4. In another 15 mL falcon tube add 10 mg of TPP and 10 mL of distilled water (to get a concentration of 1 mg/mL).
Nanoparticle preparation
  1. In a 20 mL beaker add 1 mL of chitosan solution and 100 uL of your protein, stir the mix at 1100 rpm with a magnetic stirrer (the size of nanoparticles is affected by rpm value; for smaller nanoparticles use higher rpm).
  2. Take 1 mL of the TPP solution and add it to the mix dropwise.
  3. Continue stirring for 1 hour.
Particle collection
  1. Transfer the mix to 2 1.5 mL Eppendorf tubes.
  2. NOTE: If nanoparticles are to be extracted centrifuge the tubes at 20,000 rpm for 30 minutes at 4°C.
  3. Eliminate the supernatant.
  4. The pellet will contain your protein of interest.
  5. If nanoparticles are to be used for liberation measurients or suspended in a controlled pH solution, resuspend well and store at 4 °C.
To preparation

To visualize chitosan nanoparticles some previous preparation steps must be carried out (this preparation protocol may vary).

  1. A film of Formvar has to be previously prepared and used to coat a glass slide for the creation of an 80-120 μm thick mibrane.
  2. Place a copper grid on the Formvar mibrane for it to be absorbed and later rioved with a needle.
  3. Add 20 μL of your solution of interest into the grid and let it be absorbed. Add a solution of 1% (w/v) phosphotungstic acid until the sample dries.
  4. View in a transmission electron microscope.
  5. NOTE: Samples were observed at 150,000x.

This protocol will evaluate and standardize encapsulation efficiency when working with a specific protein. It is highly recommended to work with a highly purified protein sample, so as to get the most reliable quantification. Measurients are performed according to the Bradford assay.

Detection range: 0.1-1.4 mg/mL

NOTE: Bradford reactant must be at room tiperature and shaken gently before starting the protocol.

Calibration curve of BSA

BSA Stock solution
  1. Prepare 10 mg/mL BSA solution
  2. Store in ice for further use
Dilutions

Loaded and ipty nanoparticles are prepared under the same conditions (agitation, tiperature, pH, and reactant concentrations). Thus, we used a sample of ipty encapsulation supernatant as a blank to construct a standard curve to estimate protein encapsulation efficiency. Volumes of supernatant were mixed with volumes of BSA stock solution to obtain dilutions of known protein concentrations.

  1. Refer to encapsulation protocol to prepare ipty chitosan nanoparticles.
  2. Prepare encapsulation solution aliquots.
  3. Centrifuge samples after splitting the initial encapsulation volume at 13,400 rpm for 30 min.
  4. Supernatant will be used to derive the curve. Do not discard.

Prepare dilutions according to the following table and label each tube. A small-scale procedure was adapted from Sigma Aldrich to perform Bradford assay on the prepared dilutions.

Table 1. Dilutions to derive a standard curve for encapsulation efficiency quantification

Dilution BSA concentration (mg/mL) Volume of BSA stock solution 10 mg/mL (uL) Volume of ipty nanoparticle encapsulation supernatant (uL) Final volume (uL)
0 0 0 100 100
1 0.26 2.6 97.4 100
2 0.52 5.2 94.8 100
3 0.78 7.8 92.2 100
4 1.04 10.4 89.6 100
5 1.4 14 86 100
Experimental procedure
  1. Place 6.5 μL of each pattern of BSA (0 mg/mL to 1.4 mg/mL) in sterile 0.6 mL tubes.
  2. Add 193.5 μL of Bradford reagent to each tube. The final volume is 200 μL.
  3. Vortex gently.
  4. Incubate 5-45 min at room tiperature (until a change in color is noticeable).
  5. Transfer 50 μL to a spectrophotometer cell.
  6. Blank with the tube of null BSA concentration + Bradford reagent.
  7. Take absorbance at 595 nm for the samples and record it.
  8. Derive a standard curve for protein concentration in encapsulation supernatant.

Note: There shouldn’t be a time difference higher than 10 minutes between each read.

Efficiency quantification

Refer to protein encapsulation protocol here using BSA. NOTE: Calculate initial protein concentration before stirring and record it.

Experimental procedure

  1. Prepare eight 1 mL aliquots of loaded chitosan nanoparticles: four ipty, four containing the protein of interest.
  2. Centrifuge aliquots at 13,400 rpm for 30 min.
  3. Take 6.5 μL of the supernatant and measure absorbance at 595 nm with 193.5 μL of Bradford reagent. Riiber to incubate this mix at room tiperature 5-45 minutes (until a change of color is noticeable).
  4. Record reads and estimate protein concentration in the supernatant using the previously derived standard curve.
  5. Calculate encapsulation efficiency at this initial time as follows.
IMP-1

This protocol will assess the protein release and nanoparticle stability in aqueous solutions. We quantified protein liberation by Bradford assay.

Materials

  • PBS pH 7.4
  • Bradford reagent

Standard curve derivation

  1. Use Bradford assay to derive a standard curve for a standard protein (BSA, for instance).
  2. Prepare 6 dilutions from a 10 mg/mL stock solution of the standard protein according to the table. A small-scale procedure was adapted from Sigma Aldrich to perform Bradford assay on the prepared dilutions.

Table 1. Dilutions for standard curve derivation using PBS

Dilution Standard protein concentration (mg/mL) Volume of stock solution 10 mg/mL (uL) Volume of PBS pH 7.4 (uL) Final volume (uL)
0 0 0 100 100
1 0.26 2.6 97.4 100
2 0.52 5.2 94.8 100
3 0.78 7.8 92.2 100
4 1.04 10.4 89.6 100
5 1.4 14 86 100
  • For each dilution mix 6.5 uL of the sample and 193.5 uL of Bradford reactant for a final volume of 200 uL and leave it react for 20 minutes (Sigma Aldrich suggests 5-45 minutes).
  • Read the absorbance of the riaining dilutions using dilution 0 as blank.
  • Graph absorbance reads vs concentration.
  • Use a linear trend to get the equation to compute protein concentration evaluating correlation coefficient.

Protein release behavior

  1. Refer to protein encapsulation protocol to prepare enough loaded-nanoparticles for six 1 mL aliquots (some volume is lost in every transfer).
  2. Centrifuge the total encapsulation volume at 20000 rpm for 20 minutes.
  3. Discard supernatant.
  4. Resuspend pellet in a volume of PBS pH 7.4 equal to the original volume.
  5. NOTE: Given the low solubility of chitosan in neutral pH solutions, some protocols iploy mild to moderate sonication to disrupt possible non-dissolved pellet.
  6. Prepare aliquots as previously stated.
  7. Refer to protein encapsulation protocol to prepare enough ipty nanoparticles for six 1 mL aliquots (some volume is lost in every transfer).
  8. Centrifuge the total encapsulation volume at 20000 rpm for 20 minutes.
  9. Discard supernatant.
  10. Resuspend pellet in a volume of PBS pH 7.4 equal to the original volume.
  11. Prepare aliquots as previously stated.
  12. Label all aliquots to measure thi at time 0, 2, 4, 6, 12, 24, and 48 h. Store at 37 °C and 100 rpm.
  13. At the right time, centrifuge the aliquots at 20000 rpm for 20 minutes.
  14. Take 193.5 μL of Bradford reagent and mix with 6.5 μL of centrifugation supernatant. Vortex gently.
  15. Incubate tube at room tiperature for 20 minutes.
  16. Transfer 50 μL to a spectrophotometer cell.
  17. Measure absorbance and calculate protein concentration in the supernatant using the previously derived standard curve. Blank should be PBS pH 7.4 + Bradford reagent as stated above.

NOTE: to achieve a time-efficient protocol, a previous standardization of protein encapsulation efficiency is strongly suggested (refer to protein encapsulation efficiency protocol). Since you already know your protein encapsulation efficiency, protein liberation calculations may be performed as follows.

When studying the nanoparticle behavior in a certain environment several studies are carried out to assess particle stability throughout time. Such procedures comprise Z potential measurient and visual examination of size, shape, and particle physical integrity. A stability monitoring is suggested as particles may change their shape, degrade, and conglomerate when subjected to different stimuli. Such a study is helpful to predict the behavior of the created nanoparticles throughout time and greatly improves the design of drug release experiments. Here we include a suggested simple procedure to visually evaluate particle sizes and integrity. You can also use a Z potential measurient equipment, or NanoSight NS300, as we did.

Transmission electron microscopy

  1. Refer to protein encapsulation protocol to prepare a final volume of 2 mL chitosan nanoparticles (loaded or ipty).
  2. Store at the desired conditions.
  3. Perform Ti preparation procedure on a 100 μL sample.
  4. At relevant times observe to evaluate nanoparticle integrity (size, conglomeration, and shape).

NanoSight

  1. Refer to protein encapsulation protocol to prepare a final volume of 2 mL chitosan nanoparticles (loaded or ipty).
  2. Store at the desired conditions.
  3. Dilute samples if required.
  4. At relevant times evaluate nanoparticle size distribution (statistical data provided in the analysis sheet is useful to evaluate particle behavior).

NOTE: Some devices like NanoSight NS500 are able to measure Z potential as well.