Difference between revisions of "Team:SHSBNU China/Human Practices"

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<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2018.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2018.igem.org/Judging/Awards"> award listed below</a>. </p>
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2018.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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<div style="height:5vw;" class="first_classfication" onmouseover="fcova()" onmouseout="fcoua()" id="fc_Project"><!--Project-->
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<h4 class="fc_content">Model</h4>
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<h4 class="fc_content">Safety</h4>
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<div style="height: 2.8vw; display: table-cell; vertical-align: middle">
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<div class="clear"></div>
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<div id="header_title">
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<a href="https://2018.igem.org/Team:SHSBNU_China">
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<img id="title_pic" src="https://static.igem.org/mediawiki/2018/2/23/T--SHSBNU_China--Title.jpeg"/>
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<h6 id="menu_intro">Human Practice</h6>
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<div class="second_classfication">
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#Overview">Overview</a>
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<div class="second_classfication">
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#Silver">Silver</a>
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</div>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#Chemical">Chemical and Physical Methods</a>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#Biological">Biological Method</a>
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<div class="column full_size">
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<div class="second_classfication">
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#Integrated">Integrated Human Practices</a>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#FLM">Fixing Laccase to a Matrix</a>
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</div>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#BA">Biofilm × Laccase</a>
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</div>
  
<h1>Human Practices</h1>
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<div class="second_classfication">
<p>
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Engagement#Engagement">Engagement</a>
At iGEM we believe societal considerations should be upfront and integrated throughout the design and execution of synthetic biology projects. “Human Practices” refers to iGEM teams’ efforts to actively consider how the world affects their work and the work affects the world. Through your Human Practices activities, your team should demonstrate how you have thought carefully and creatively about whether your project is responsible and good for the world. We invite you to explore issues relating (but not limited) to the ethics, safety, security, and sustainability of your project, and to show how this exploration feeds back into your project purpose, design and execution.
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</div>
</p>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Engagement#OnCampus">On Campus</a>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Engagement#OutCampus">Off Campus</a>
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<div class="second_classfication">
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#C">Conclusion</a>
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<p>For more information, please see the <a href="https://2018.igem.org/Human_Practices">Human Practices Hub</a>. There you will find:</p>
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<div id="articles">
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<div id="sec_title">
<ul>
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<h1>Human Practice</h1>
<li> an <a href="https://2018.igem.org/Human_Practices/Introduction">introduction</a> to Human Practices at iGEM </li>
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</div>
<li>tips on <a href="https://2018.igem.org/Human_Practices/How_to_Succeed">how to succeed</a> including explanations of judging criteria and advice about how to conduct and document your Human Practices work</li>
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<li>descriptions of <a href="https://2018.igem.org/Human_Practices/Examples">exemplary work</a> to inspire you</li>
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<li>links to helpful <a href="https://2018.igem.org/Human_Practices/Resources">resources</a></li>
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<li>And more! </li>
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</ul>
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<div id="sec_content">
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<h2 id="Overview">I. Overview</h2>
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<div class="content">
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<img src="https://static.igem.org/mediawiki/2018/3/36/T--SHSBNU_China--hp1.jpg" style="width:100%"></image>
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<p class="text">
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After setting our goal to decompose synthetic dye with laccases, we sought to find out more information of biological sewage treatment and practical problems that required to be addressed. We also wanted to find out how our project could be applied to real world sewage treatment, and what change should we make to improve our project.
 +
                            <p>Therefore, we visited Hanghua sewage plant(World Trade Center, Beijing, China). Hanghua sewage plant was experienced in using biology method to decompose pollutant while they also had used other ways, including chemical and physical methods. Mr. Li, the manager of the sewage plant, told us lots of information we needed.
 +
</p>
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</div>
  
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<h2 id="Silver">II. Silver</h2>
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<div class="content">
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<p class="text">
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During the interview, we found out the situation of each current methods.
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</p>
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</div>
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<h3 id="Chemical">a. Chemical and Physical Methods</h3>
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<div class="content">
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<p class="text">
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First of all, we learned that their previous chemical and physical techniques such as active carbon adsorption and oxidation method, and being expensive in cost for both methods, the sewage plant had to switched to biological treatment.
 +
</p>
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</div>
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<h3 id="Biological">b. Biological Method</h3>
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<div class="content">
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<img src="https://static.igem.org/mediawiki/2018/7/72/T--SHSBNU_China--41000.jpg" style="width: 100%"></image>
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<p class="text">
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Hanghua sewage plant mainly used integrated sewage treatment device, in which a critical step was to add bacteria to decompose pollutant. Specially engineered bacteria were able to reproduce rapidly in sewage water, and this allowed the factory to process waste water with relatively lower financial requirement.
 +
</p>
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<img src="https://static.igem.org/mediawiki/2018/a/ae/T--SHSBNU_China--hp3.jpg" style="width: 100%"></image>
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<p class="text">
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However, the bacteria used in sewage treatment may release toxic gases such as H2S. The plant had to turn on the ventilation system periodically, which consumed large amount of electric power and produced loud noise. As time went by, the advantage of lower cost is offsetted by electricity bills and the higher payment for their workers working under unfriendly environment.
 +
</p>
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<img src="https://static.igem.org/mediawiki/2018/a/a2/T--SHSBNU_China--41002.jpg" style="width: 100%"></image>
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<p class="text">
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In traditional biological treatment method, bacteria are usually injected into waste water directly, floating, growing, as well as continuously being removed by the outflow. The dynamic balance of bacteria concentration might be broken by increasing the total flow of sewage water. Under extreme circumstances, growth rate of bacteria might be overwhelmed by the loss rate through outflow. Moreover, workers in the sewage treatment plant told us, due to wear and tear since 2003 and other undiscovered problems, the total ability of sewage treatment had dropped 40%. To address this issue, we needed to develop a sustainable consumptive material.
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</p>
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</div>
  
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<h2 id="Integrated">III. Integrated Human Practice</h2>
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    <div class="content">
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    <p class="text">
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    By discovering shortcomings of traditional treatment method, we found some critical factors that were worth considering in our project.
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    </p>
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    </div>
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<h3 id="FLM">a. Fixing Laccase to a Matrix</h3>
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<div class="content">
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<p class="text">
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The first factor was the low concentration of bacteria/enzyme during treatment. A high flow rate may wash away bacteria fast, lowering the concentration of bacteria/enzymes as well as the chance and duration of contact between pollutant and enzymes. This reminded us to adjust our project in two aspects: <br>(1) Attach bacteria/Laccase to some fixed matrix, preventing them from being washed away by water flow. <br>(2) Use lots of small plastic beads to expand surface area, increasing the chance of contact between pollutant and enzymes.
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</p>
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<p class="text">
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In combination of the two aspects, we may achieve a higher concentration of laccase and longer duration of contact between pollutant and enzymes. Moreover, because the laccase can process the sewage without releasing toxic gas, it will eliminate the unnecessary cost of using extraction pump and extra employee payment, which as a result can enable factory to utilize the biggest advantage of biology method with inexpensive price.
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</p>
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</div>
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<h3 id="BA">b. Biofilm × Laccase</h3>
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<div class="content">
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<p class="text">
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The second factor to consider was the competition among bacteria species. Through human practice, we realized that the composition of sewage disposal was very complicated. There were usually more than one species of microorganism competing in the same environment, which may negatively affect the growth of target bacteria. By allowing our bacteria to produce biofilm, they could get an advantage of growth by sharing nutrients and getting sheltered from competitors.
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</p>
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<p class="text">
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Finally, we came up with the idea, using PHA plastic beads coated with biofilm and biofilm producing bacteria, then display laccase enzyme on biofilm by adding SpyTag to Biofilm and SpyCatcher to CotA laccase. PHA can also act as a carbon source to bacteria, maintaining growth of bacteria and production of biofilm for longer period. This may further reduce cost by replacing biomaterials less frequently.
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</p>
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<img src="https://static.igem.org/mediawiki/2018/a/a4/T--SHSBNU_China--hp5.jpg" style="width: 100%"></image>
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</div>
  
<p>On this page, your team should document all of your Human Practices work and activities. You should write about the Human Practices topics you considered in your project, document any activities you conducted to explore these topics (such as engaging with experts and stakeholders), describe why you took a particular approach (including referencing any work you built upon), and explain if and how you integrated takeaways from your Human Practices work back into your project purpose, design and/or execution. </p>
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<h2 id="Engagement">IV. Public Education and Engagement</h2>
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<div class="content">
<p>If your team has gone above and beyond in work related to safety, then you should document this work on your Safety wiki page and provide a description and link on this page. If your team has developed education and public engagement efforts that go beyond a focus on your particular project, and for which would like to nominate your team for the Best Education and Public Engagement Special Prize, you should document this work on your Education and Education wiki page and provide a description and link here. </p>
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<p class="text">
</div>
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Our public education includes two sections: on campus and off campus activities.
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</p>
<div class="clear"></div>
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<p class="text">
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On campus, we design and implement a layered education system, starting from series of lectures to all students, interviewing some students and evaluating their potential of being iGEMers, then our synthetic biology club offering them training in genetic engineering.
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</p>
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<p class="text">
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Off campus, we established the collaboration with sewage plant for exchanging the instructive information including biology, plant and policy. We strongly believe that the practicability of our project would attract more plants even business companies to cooperate with us.
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</p>
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</div>
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<h3 id="OnCampus">a. On campus part</h3>
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<div class="content">
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<p class="text">
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We conducted lectures of iGEM projects and synthetic biology techniques to students on Tuesday and Thursday weekly. At the start of our education program, we briefly introduced our project's purpose, effectiveness and future potential contribution to the environment. We also invited students who were interested in improving the environment by synthetic biology technologies. After that, we held a series of lectures explaining the molecular mechanism, and prove practicability of our project to the students who followed up our project.
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</p>
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<div style="width:46vw" class="content_pic_right">
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<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/3/3a/T--SHSBNU_China--43000.png"/>
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<p class="pic_text"></p>
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<div style="width:46vw" class="content_pic_right">
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<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/a/ad/T--SHSBNU_China--43001.png"/>
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<p class="pic_text"></p>
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<p class="text">
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For the whole process of education, we put a high value on the effectiveness of lecture. Therefore, we required students who is willing to cooperate our work to register their WeChat account, and asked randomly 75% of students each time to share their perspectives, so we could adjust and improve the content of our lecture. We also interviewed students to find future iGEMers.
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</p>
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<div style="width:46vw" class="content_pic_right">
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<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/d/de/T--SHSBNU_China--43002.png"/>
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<p class="pic_text"></p>
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<p class="text">
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Furthermore, in our synthetic biology club, we introduced some basic methods and techniques of genetic engineering such as DNA extraction, restriction enzyme digestion, Primer design, and PCR, reserving talented students for our further iGEM projects.
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</p>
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<div style="width:46vw" class="content_pic_right">
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<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/6/60/T--SHSBNU_China--43004.png"/>
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<p class="pic_text"></p>
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<p class="text">
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In general, our on-campus education program comprehensively passed on our experience in iGEM and synthetic biology knowledge. Our program had also triggered students’ concern on environmental problems, as well as their passion for learning synthetic biology and becoming a qualified iGEMer.
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</p>
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</div>
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<h3 id="OutCampus">b. Off campus part</h3>
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<div class="content">
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<p class="text">
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During the visit of a sewage treatment plant, we briefly introduced our project to work leaders, then we showed reliability of our project and resolution to protect the environment. On one side, sewage treatment plant helped us conduct the design of our program by providing first-hand information of sewage plant. On the other side, we offered more information of our modified biology treatment. As a result, both sides were looking forward to establishing a long-term collaboration.
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</p>
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<div style="width:46vw" class="content_pic_right">
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<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/0/08/T--SHSBNU_China--43100.png"/>
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<p class="pic_text"></p>
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</div>
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</div>
  
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<h2 id="C">V. Conclusion</h2>
<div class="column full_size">
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<div class="content">
<div class="highlight decoration_background">
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<p class="text">
<p>The iGEM judges will review this page to assess whether you have met the Silver and/or Gold medal requirements based on the Integrated Human Practices criteria listed below. If you nominate your team for the <a href="https://2018.igem.org/Judging/Awards">Best Integrated Human Practices Special Prize</a> by filling out the corresponding field in the <a href="https://2018.igem.org/Judging/Judging_Form">judging form</a>, the judges will also review this page to consider your team for that prize.  
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In conclusion, through the biology method, we found that the expensive cost and decreasing effectiveness are two main problems for traditional biological treatment method. These experiences from human practice has inspired us with the idea of designing our Biofilm × Laccase system. In the near future, we will build a filter with PHA beads coated with laccase linked biofilm and optimize the filter for real world sewage treatment.
</p>
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</p>
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<h3>Silver Medal Criterion #3</h3>
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<p>Convince the judges you have thought carefully and creatively about whether your work is responsible and good for the world. Document how you have investigated these issues and engaged with your relevant communities, why you chose this approach, and what you have learned. Please note that surveys will not fulfill this criteria unless you follow scientifically valid methods. </p>
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<h3>Gold Medal Criterion #1</h3>
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<p>Expand on your silver medal activity by demonstrating how you have integrated the investigated issues into the purpose, design and/or execution of your project. Document how your project has changed based upon your human practices work.
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<div style="display:table-cell;vertical-align:middle;">
 
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<p style="font-size:1vw;font-family:'Times New Roman';font-style:italic;color:#666666">SHSBNU_China 2018, Created by Azir</p>
 
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<h3>Best Integrated Human Practices Special Prize</h3>
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<p>To compete for the Best Integrated Human Practices prize, please describe your work on this page and also fill out the description on the judging form. </p>
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<p>How does your project affect society and how does society influence the direction of your project? How might ethical considerations and stakeholder input guide your project purpose and design and the experiments you conduct in the lab? How does this feedback enter into the process of your work all through the iGEM competition? Document a thoughtful and creative approach to exploring these questions and how your project evolved in the process to compete for this award!</p>
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<p>You must also delete the message box on the top of this page to be eligible for this prize.</p>
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Latest revision as of 01:46, 18 October 2018

Human Practices

Human Practice

I. Overview

After setting our goal to decompose synthetic dye with laccases, we sought to find out more information of biological sewage treatment and practical problems that required to be addressed. We also wanted to find out how our project could be applied to real world sewage treatment, and what change should we make to improve our project.

Therefore, we visited Hanghua sewage plant(World Trade Center, Beijing, China). Hanghua sewage plant was experienced in using biology method to decompose pollutant while they also had used other ways, including chemical and physical methods. Mr. Li, the manager of the sewage plant, told us lots of information we needed.

II. Silver

During the interview, we found out the situation of each current methods.

a. Chemical and Physical Methods

First of all, we learned that their previous chemical and physical techniques such as active carbon adsorption and oxidation method, and being expensive in cost for both methods, the sewage plant had to switched to biological treatment.

b. Biological Method

Hanghua sewage plant mainly used integrated sewage treatment device, in which a critical step was to add bacteria to decompose pollutant. Specially engineered bacteria were able to reproduce rapidly in sewage water, and this allowed the factory to process waste water with relatively lower financial requirement.

However, the bacteria used in sewage treatment may release toxic gases such as H2S. The plant had to turn on the ventilation system periodically, which consumed large amount of electric power and produced loud noise. As time went by, the advantage of lower cost is offsetted by electricity bills and the higher payment for their workers working under unfriendly environment.

In traditional biological treatment method, bacteria are usually injected into waste water directly, floating, growing, as well as continuously being removed by the outflow. The dynamic balance of bacteria concentration might be broken by increasing the total flow of sewage water. Under extreme circumstances, growth rate of bacteria might be overwhelmed by the loss rate through outflow. Moreover, workers in the sewage treatment plant told us, due to wear and tear since 2003 and other undiscovered problems, the total ability of sewage treatment had dropped 40%. To address this issue, we needed to develop a sustainable consumptive material.

III. Integrated Human Practice

By discovering shortcomings of traditional treatment method, we found some critical factors that were worth considering in our project.

a. Fixing Laccase to a Matrix

The first factor was the low concentration of bacteria/enzyme during treatment. A high flow rate may wash away bacteria fast, lowering the concentration of bacteria/enzymes as well as the chance and duration of contact between pollutant and enzymes. This reminded us to adjust our project in two aspects:
(1) Attach bacteria/Laccase to some fixed matrix, preventing them from being washed away by water flow.
(2) Use lots of small plastic beads to expand surface area, increasing the chance of contact between pollutant and enzymes.

In combination of the two aspects, we may achieve a higher concentration of laccase and longer duration of contact between pollutant and enzymes. Moreover, because the laccase can process the sewage without releasing toxic gas, it will eliminate the unnecessary cost of using extraction pump and extra employee payment, which as a result can enable factory to utilize the biggest advantage of biology method with inexpensive price.

b. Biofilm × Laccase

The second factor to consider was the competition among bacteria species. Through human practice, we realized that the composition of sewage disposal was very complicated. There were usually more than one species of microorganism competing in the same environment, which may negatively affect the growth of target bacteria. By allowing our bacteria to produce biofilm, they could get an advantage of growth by sharing nutrients and getting sheltered from competitors.

Finally, we came up with the idea, using PHA plastic beads coated with biofilm and biofilm producing bacteria, then display laccase enzyme on biofilm by adding SpyTag to Biofilm and SpyCatcher to CotA laccase. PHA can also act as a carbon source to bacteria, maintaining growth of bacteria and production of biofilm for longer period. This may further reduce cost by replacing biomaterials less frequently.

IV. Public Education and Engagement

Our public education includes two sections: on campus and off campus activities.

On campus, we design and implement a layered education system, starting from series of lectures to all students, interviewing some students and evaluating their potential of being iGEMers, then our synthetic biology club offering them training in genetic engineering.

Off campus, we established the collaboration with sewage plant for exchanging the instructive information including biology, plant and policy. We strongly believe that the practicability of our project would attract more plants even business companies to cooperate with us.

a. On campus part

We conducted lectures of iGEM projects and synthetic biology techniques to students on Tuesday and Thursday weekly. At the start of our education program, we briefly introduced our project's purpose, effectiveness and future potential contribution to the environment. We also invited students who were interested in improving the environment by synthetic biology technologies. After that, we held a series of lectures explaining the molecular mechanism, and prove practicability of our project to the students who followed up our project.

For the whole process of education, we put a high value on the effectiveness of lecture. Therefore, we required students who is willing to cooperate our work to register their WeChat account, and asked randomly 75% of students each time to share their perspectives, so we could adjust and improve the content of our lecture. We also interviewed students to find future iGEMers.

Furthermore, in our synthetic biology club, we introduced some basic methods and techniques of genetic engineering such as DNA extraction, restriction enzyme digestion, Primer design, and PCR, reserving talented students for our further iGEM projects.

In general, our on-campus education program comprehensively passed on our experience in iGEM and synthetic biology knowledge. Our program had also triggered students’ concern on environmental problems, as well as their passion for learning synthetic biology and becoming a qualified iGEMer.

b. Off campus part

During the visit of a sewage treatment plant, we briefly introduced our project to work leaders, then we showed reliability of our project and resolution to protect the environment. On one side, sewage treatment plant helped us conduct the design of our program by providing first-hand information of sewage plant. On the other side, we offered more information of our modified biology treatment. As a result, both sides were looking forward to establishing a long-term collaboration.

V. Conclusion

In conclusion, through the biology method, we found that the expensive cost and decreasing effectiveness are two main problems for traditional biological treatment method. These experiences from human practice has inspired us with the idea of designing our Biofilm × Laccase system. In the near future, we will build a filter with PHA beads coated with laccase linked biofilm and optimize the filter for real world sewage treatment.