Difference between revisions of "Team:SHSBNU China/Human Practices"

 
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<p style="font-family: Serif;font-size: 3.5vw; font-weight: bold;text-align: center;margin: 0.5vw 0vw 0.5vw 0vw">Human Practice</p>
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human Practices#Overview">Overview</a>
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human Practices#Chemical">Chemical and Physical Methods</a>
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human Practices#Biological">Biological Method</a>
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human Practices#Effectiveness">Effectiveness of Our Project</a>
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#FLM">Fixing Laccase to a Matrix</a>
 
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human Practices#Adjustments">Integrated Human Practices</a>
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#BA">Biofilm × Laccase</a>
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Engagement#OutCampus">Off Campus</a>
 
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Human_Practices#C">Conclusion</a>
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<h2 id="Overview">I. Overview</h2>
 
<h2 id="Overview">I. Overview</h2>
 
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<p class="text">
We conducted our human practice though visitation a sewage plant of Hanghua Property of China Merchants located at China World Trade Center, in Beijing. Since investigating this plant mainly uses the biology method to decompose sewage and takes it as a main method for a long time, while they also had used other ways, including chemical and physical methods, and evaluated as a precursor in sewage disposal. Our team believes in that the process and details of either daily-sewage or factory-sewage are similar, thus it is the best choice to find out the specific information of techniques used and practical problems faced in sewage disposal as a critical method for ensuring and improving our project' feasibility of dealing with problems in the present treatment.  
+
After setting our goal to decompose synthetic dye with laccases, we sought to find out more information of biological sewage treatment and practical problems that required to be addressed. We also wanted to find out how our project could be applied to real world sewage treatment, and what change should we make to improve our project.
 +
                            <p>Therefore, we visited Hanghua sewage plant(World Trade Center, Beijing, China). Hanghua sewage plant was experienced in using biology method to decompose pollutant while they also had used other ways, including chemical and physical methods. Mr. Li, the manager of the sewage plant, told us lots of information we needed.
 
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</p>
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<img class="pictures" id = "40000" src="https://static.igem.org/mediawiki/2018/a/a6/T--SHSBNU_China--40000.jpg"/>
 
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<h2 style="width:36vw" id="Silver">II. Silver</h2>
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<h2 id="Silver">II. Silver</h2>
 
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<p class="text">
During the interview, we found out the situation of each current methods
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During the interview, we found out the situation of each current methods.
 
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First of all, they talked about their previous chemical and physical techniques such as Activated carbon adsorption technology and oxidation method, both of them have a same defect that is expensive cost, which stimulate them the idea of using the biology treatment.
+
First of all, we learned that their previous chemical and physical techniques such as active carbon adsorption and oxidation method, and being expensive in cost for both methods, the sewage plant had to switched to biological treatment.
 
</p>
 
</p>
 
</div>
 
</div>
 
<h3 id="Biological">b. Biological Method</h3>
 
<h3 id="Biological">b. Biological Method</h3>
 
<div class="content">
 
<div class="content">
<div style="" class="content_pic_right">
+
<img src="https://static.igem.org/mediawiki/2018/7/72/T--SHSBNU_China--41000.jpg" style="width: 100%"></image>
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/7/72/T--SHSBNU_China--41000.jpg"/>
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<p class="pic_text"></p>
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</div>
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<p class="text">
 
<p class="text">
After touring us to view their disposal machine, which contains plenty of bacteria used for decomposing sewage, we begin to discuss about its advantage and defects. Because special treated bacteria are able to reproduce themselves rapidly, factory is able to process waste water with relatively lower financial requirement. However, since the bacteria release a toxic gas when they are disposing sewage, the plant has to continue turning on aeration pumps, which need a huge number of money to support, and harm their employees' hearing caused pump-noises. As time goes by, the advantage of lower cost is offset by its electricity bills, and the higher payment for their workers because of the unfriendly work environment.
+
Hanghua sewage plant mainly used integrated sewage treatment device, in which a critical step was to add bacteria to decompose pollutant. Specially engineered bacteria were able to reproduce rapidly in sewage water, and this allowed the factory to process waste water with relatively lower financial requirement.  
 
</p>
 
</p>
<div style="" class="content_pic_left">
+
<img src="https://static.igem.org/mediawiki/2018/a/ae/T--SHSBNU_China--hp3.jpg" style="width: 100%"></image>
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/2/26/T--SHSBNU_China--41001.jpg"/>
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<p class="pic_text"></p>
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<div style="" class="content_pic_right">
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+
 
<p class="text">
 
<p class="text">
Moreover, traditional biological treatments have some factors that keep it from extensive using. For most of the cases, traditional germs are directly injected into the waste water. In this case, single germ are unable to fully act because the thin concentration, and the death of bacteria caused by aeration pump equipment that contains these bacteria is easily eroded and short lifespan can added up, which is even higher than the reproducing rate, and lead to a decreasing in its effectiveness. The statistics show that the plant could dispose eighty tons of sewage in 2003, but it only disposes twenty tons in 2018, which declines about 60% effectiveness
+
However, the bacteria used in sewage treatment may release toxic gases such as H2S. The plant had to turn on the ventilation system periodically, which consumed large amount of electric power and produced loud noise. As time went by, the advantage of lower cost is offsetted by electricity bills and the higher payment for their workers working under unfriendly environment.
 +
</p>
 +
<img src="https://static.igem.org/mediawiki/2018/a/a2/T--SHSBNU_China--41002.jpg" style="width: 100%"></image>
 +
<p class="text">
 +
In traditional biological treatment method, bacteria are usually injected into waste water directly, floating, growing, as well as continuously being removed by the outflow. The dynamic balance of bacteria concentration might be broken by increasing the total flow of sewage water. Under extreme circumstances, growth rate of bacteria might be overwhelmed by the loss rate through outflow. Moreover, workers in the sewage treatment plant told us, due to wear and tear since 2003 and other undiscovered problems, the total ability of sewage treatment had dropped 40%. To address this issue, we needed to develop a sustainable consumptive material.
 
</p>
 
</p>
<div style="width:35.9vw" class="content_pic_left">
 
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/d/d9/T--SHSBNU_China--41003.png"/>
 
<p class="pic_text"></p>
 
</div>
 
 
</div>
 
</div>
  
<h2 style="width:36vw" id="Integrated">III. Integrated Human Practice</h2>
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<h2 id="Integrated">III. Integrated Human Practice</h2>
<h3 id="Effectiveness">a. Effectiveness of our project</h3>
+
    <div class="content">
 +
    <p class="text">
 +
    By discovering shortcomings of traditional treatment method, we found some critical factors that were worth considering in our project.
 +
    </p>
 +
    </div>
 +
<h3 id="FLM">a. Fixing Laccase to a Matrix</h3>
 
<div class="content">
 
<div class="content">
 
<p class="text">
 
<p class="text">
Fortunately, based on these clues, we conceived to use biofilm and laccase as the problem solver and received the positive feedback of our project. Since biofilms may form and firmly attach to living and non-living surfaces, the bacteria living in biofilms organize themselves into a coordinated functional community in which lots of living organisms can share nutrients and are sheltered from the possibility of being erased, which means that the problem of lower bacteria density, and death caused by erosion are solved successfully.  
+
The first factor was the low concentration of bacteria/enzyme during treatment. A high flow rate may wash away bacteria fast, lowering the concentration of bacteria/enzymes as well as the chance and duration of contact between pollutant and enzymes. This reminded us to adjust our project in two aspects: <br>(1) Attach bacteria/Laccase to some fixed matrix, preventing them from being washed away by water flow. <br>(2) Use lots of small plastic beads to expand surface area, increasing the chance of contact between pollutant and enzymes.  
 
</p>
 
</p>
 
<p class="text">
 
<p class="text">
Moreover, the laccase is capable of processing the sewage without releasing any toxic substance, which eliminates the unnecessary cost of using aeration pump and extra employee payment, which means to utilize biology treatment' biggest advantage-lower price.
+
In combination of the two aspects, we may achieve a higher concentration of laccase and longer duration of contact between pollutant and enzymes. Moreover, because the laccase can process the sewage without releasing toxic gas, it will eliminate the unnecessary cost of using extraction pump and extra employee payment, which as a result can enable factory to utilize the biggest advantage of biology method with inexpensive price.
 
</p>
 
</p>
 
</div>
 
</div>
<h3 id="Adjustments">b. Integrated Human Practice</h3>
+
<h3 id="BA">b. Biofilm × Laccase</h3>
 
<div class="content">
 
<div class="content">
<div style="" class="content_pic_right">
 
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/8/83/T--SHSBNU_China--42100.jpg"/>
 
<p class="pic_text"></p>
 
</div>
 
 
<p class="text">
 
<p class="text">
Though our project is capable of dealing with the issue of current biology treatments, inspired by the human practice, we notice some critical factors that is worth to consider and adjust our project based on it, the effect of speed on effectiveness and the competition among bacteria. The most crucial one is the speed of sewage, since the higher speed of sewage means the lower time of contacting with our bacteria, which would have a serious influence on effectiveness of bacteria. Therefore, we draw a method of using physical facilities to either increase the contact area or control the run-off of sewage. Therefore, there are three adjustments for it. The first one is to use proper signal peptide to enable bacteria to secrete laccase outside of it and fix secreted laccase by adding the spy-catcher with it and spy-tag on the surface of biofilm, since under this method, the laccase is able to directly contact with sewage to encompass more effective units on the same surface. Secondly, based on research of some archetypes, we plan to design our own machine to control the run-off of sewage and gathering particles for effectiveness.  
+
The second factor to consider was the competition among bacteria species. Through human practice, we realized that the composition of sewage disposal was very complicated. There were usually more than one species of microorganism competing in the same environment, which may negatively affect the growth of target bacteria. By allowing our bacteria to produce biofilm, they could get an advantage of growth by sharing nutrients and getting sheltered from competitors.  
 
</p>
 
</p>
<div style="width:20vw" class="content_pic_right">
 
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/2/21/T--SHSBNU_China--42101.jpg"/>
 
<p class="pic_text"></p>
 
</div>
 
 
<p class="text">
 
<p class="text">
Furthermore, the another challenge we need to deal with is the competition between wild bacteria and ours. Through human practice, we realized that the realistic condition of sewage disposal is complicated, which means that there are usually more than one or two colonies of bacteria in the same area. Since once the biofilm of our bacteria forming, they share nutrients and defend the intruder together, which is able to compete with any wild type bacteria, another key adjustment is to ensure our bacteria that have a nutritious and comfortable environment for growth and formation of biofilm. Our team decide to provide a suitable environment, and we focus on the particle Bluepha capsule. since this particle is made of carbohydrate, and when we plant the modified bacteria onto its surface, the rate of growth and formation of biofilm would increase significantly to help our bacteria compete with the original germsunder that environment.
+
Finally, we came up with the idea, using PHA plastic beads coated with biofilm and biofilm producing bacteria, then display laccase enzyme on biofilm by adding SpyTag to Biofilm and SpyCatcher to CotA laccase. PHA can also act as a carbon source to bacteria, maintaining growth of bacteria and production of biofilm for longer period. This may further reduce cost by replacing biomaterials less frequently.
</p>
+
</div>
+
<h3 id="Conclusion">c. Conclusion</h3>
+
<div class="content">
+
<p class="text">
+
In conclusion, this human practice investigates the details of current methods disposal, and their defects. As for the biology method, the expensive cost and decreasing effectiveness are two main problems required to address, and could be solved by our project theoratically. Therefore, we believe in that with further improvement, adjustments inspired by the human, our project is able to work under realistic condition and have better effect of practical application in larger scale-factory-sewage disposal.
+
 
</p>
 
</p>
 +
<img src="https://static.igem.org/mediawiki/2018/a/a4/T--SHSBNU_China--hp5.jpg" style="width: 100%"></image>
 
</div>
 
</div>
  
 
<h2 id="Engagement">IV. Public Education and Engagement</h2>
 
<h2 id="Engagement">IV. Public Education and Engagement</h2>
<div class="content">
+
<div class="content">
<p class="text">
+
<p class="text">
Our public education includes two sections: inner and outer school propaganda. As for on campus part, we design and take a strict but excellent education system by using the resource inside school, and are willing to pass on our system to next generations of IGEMer as a tradition.
+
Our public education includes two sections: on campus and off campus activities.
</p>
+
</p>
<p class="text">
+
<p class="text">
As for out of campus part, we establish the collaboration with sewage plant for exchanging the instructive information through biology, plant and policy. It is the only the first step for our team, we strongly believe that the usefulness of our project would attract more plant even business company to cooperate with us.
+
On campus, we design and implement a layered education system, starting from series of lectures to all students, interviewing some students and evaluating their potential of being iGEMers, then our synthetic biology club offering them training in genetic engineering.
</p>
+
</p>
</div>
+
<p class="text">
 +
Off campus, we established the collaboration with sewage plant for exchanging the instructive information including biology, plant and policy. We strongly believe that the practicability of our project would attract more plants even business companies to cooperate with us.
 +
</p>
 +
</div>
 
<h3 id="OnCampus">a. On campus part</h3>
 
<h3 id="OnCampus">a. On campus part</h3>
<div class="content">
+
<div class="content">
<p class="text">
+
<p class="text">
We conducted lectures about our IGEM project and synthetic biology techniques to students on Tuesday and Thursday weekly. At the start of our education program, during the club exhibition, we briefly introduced our project's purpose, effectiveness and future potential contribution to environment to identify and attract the students who is interested in protecting environment. After that, for the students who as well as have further interests in learning the method of designing something to protect our habitat, we held a series of lectures to explain the specific mechanism, and prove practicability of our project. Furthermore, we taught them about the knowledge of techniques and thinking method we used in designing and finishing the project. In general, our inner-school education program comprehensively passed on our experience as IGEMer and the synthetic biology knowledge as well as triggered their passion of learning synthetic biology and being an IGEMer to think about pollution problems and solutions to retard it.
+
We conducted lectures of iGEM projects and synthetic biology techniques to students on Tuesday and Thursday weekly. At the start of our education program, we briefly introduced our project's purpose, effectiveness and future potential contribution to the environment. We also invited students who were interested in improving the environment by synthetic biology technologies. After that, we held a series of lectures explaining the molecular mechanism, and prove practicability of our project to the students who followed up our project.  
</p>
+
</p>
<p class="text">
+
<div style="width:46vw" class="content_pic_right">
For the whole process of education, we put a high value on the effectiveness of lecture. Therefore, we required students who is willing to cooperate our work to register their WeChat account, and privately asked randomly 75% of students each time to talk about their experience of it to adjust and improve the content of our lecture for satisfying most of audiences.
+
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/3/3a/T--SHSBNU_China--43000.png"/>
</p>
+
<p class="pic_text"></p>
 
</div>
 
</div>
 +
<div style="width:46vw" class="content_pic_right">
 +
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/a/ad/T--SHSBNU_China--43001.png"/>
 +
<p class="pic_text"></p>
 +
</div>
 +
<p class="text">
 +
For the whole process of education, we put a high value on the effectiveness of lecture. Therefore, we required students who is willing to cooperate our work to register their WeChat account, and asked randomly 75% of students each time to share their perspectives, so we could adjust and improve the content of our lecture. We also interviewed students to find future iGEMers.
 +
</p>
 +
<div style="width:46vw" class="content_pic_right">
 +
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/d/de/T--SHSBNU_China--43002.png"/>
 +
<p class="pic_text"></p>
 +
</div>
 +
<p class="text">
 +
Furthermore, in our synthetic biology club, we introduced some basic methods and techniques of genetic engineering such as DNA extraction, restriction enzyme digestion, Primer design, and PCR, reserving talented students for our further iGEM projects.
 +
</p>
 +
<div style="width:46vw" class="content_pic_right">
 +
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/6/60/T--SHSBNU_China--43004.png"/>
 +
<p class="pic_text"></p>
 +
</div>
 +
<p class="text">
 +
In general, our on-campus education program comprehensively passed on our experience in iGEM and synthetic biology knowledge. Our program had also triggered students’ concern on environmental problems, as well as their passion for learning synthetic biology and becoming a qualified iGEMer.
 +
</p>
 +
</div>
 
<h3 id="OutCampus">b. Off campus part</h3>
 
<h3 id="OutCampus">b. Off campus part</h3>
 +
<div class="content">
 +
<p class="text">
 +
During the visit of a sewage treatment plant, we briefly introduced our project to work leaders, then we showed reliability of our project and resolution to protect the environment. On one side, sewage treatment plant helped us conduct the design of our program by providing first-hand information of sewage plant. On the other side, we offered more information of our modified biology treatment. As a result, both sides were looking forward to establishing a long-term collaboration.
 +
</p>
 +
<div style="width:46vw" class="content_pic_right">
 +
<img class="pictures" id = "" src="https://static.igem.org/mediawiki/2018/0/08/T--SHSBNU_China--43100.png"/>
 +
<p class="pic_text"></p>
 +
</div>
 +
</div>
 +
 +
<h2 id="C">V. Conclusion</h2>
 
<div class="content">
 
<div class="content">
 
<p class="text">
 
<p class="text">
Because of the belief in the usefulness of our project and the resolution of protecting habitat, after we visited work leaders of a sewage treatment plant, they established a long-term collaboration to help us conduct the design of our program by providing first-hand information of sewage plant. They intend to know more information of this type of modified biology treatment, and are willing to offer some latest policy to us for having more widely perspective of this project.
+
In conclusion, through the biology method, we found that the expensive cost and decreasing effectiveness are two main problems for traditional biological treatment method. These experiences from human practice has inspired us with the idea of designing our Biofilm × Laccase system. In the near future, we will build a filter with PHA beads coated with laccase linked biofilm and optimize the filter for real world sewage treatment.
 
</p>
 
</p>
</div>
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                    </div>
  
 
<!--
 
<!--

Latest revision as of 01:46, 18 October 2018

Human Practices

Human Practice

I. Overview

After setting our goal to decompose synthetic dye with laccases, we sought to find out more information of biological sewage treatment and practical problems that required to be addressed. We also wanted to find out how our project could be applied to real world sewage treatment, and what change should we make to improve our project.

Therefore, we visited Hanghua sewage plant(World Trade Center, Beijing, China). Hanghua sewage plant was experienced in using biology method to decompose pollutant while they also had used other ways, including chemical and physical methods. Mr. Li, the manager of the sewage plant, told us lots of information we needed.

II. Silver

During the interview, we found out the situation of each current methods.

a. Chemical and Physical Methods

First of all, we learned that their previous chemical and physical techniques such as active carbon adsorption and oxidation method, and being expensive in cost for both methods, the sewage plant had to switched to biological treatment.

b. Biological Method

Hanghua sewage plant mainly used integrated sewage treatment device, in which a critical step was to add bacteria to decompose pollutant. Specially engineered bacteria were able to reproduce rapidly in sewage water, and this allowed the factory to process waste water with relatively lower financial requirement.

However, the bacteria used in sewage treatment may release toxic gases such as H2S. The plant had to turn on the ventilation system periodically, which consumed large amount of electric power and produced loud noise. As time went by, the advantage of lower cost is offsetted by electricity bills and the higher payment for their workers working under unfriendly environment.

In traditional biological treatment method, bacteria are usually injected into waste water directly, floating, growing, as well as continuously being removed by the outflow. The dynamic balance of bacteria concentration might be broken by increasing the total flow of sewage water. Under extreme circumstances, growth rate of bacteria might be overwhelmed by the loss rate through outflow. Moreover, workers in the sewage treatment plant told us, due to wear and tear since 2003 and other undiscovered problems, the total ability of sewage treatment had dropped 40%. To address this issue, we needed to develop a sustainable consumptive material.

III. Integrated Human Practice

By discovering shortcomings of traditional treatment method, we found some critical factors that were worth considering in our project.

a. Fixing Laccase to a Matrix

The first factor was the low concentration of bacteria/enzyme during treatment. A high flow rate may wash away bacteria fast, lowering the concentration of bacteria/enzymes as well as the chance and duration of contact between pollutant and enzymes. This reminded us to adjust our project in two aspects:
(1) Attach bacteria/Laccase to some fixed matrix, preventing them from being washed away by water flow.
(2) Use lots of small plastic beads to expand surface area, increasing the chance of contact between pollutant and enzymes.

In combination of the two aspects, we may achieve a higher concentration of laccase and longer duration of contact between pollutant and enzymes. Moreover, because the laccase can process the sewage without releasing toxic gas, it will eliminate the unnecessary cost of using extraction pump and extra employee payment, which as a result can enable factory to utilize the biggest advantage of biology method with inexpensive price.

b. Biofilm × Laccase

The second factor to consider was the competition among bacteria species. Through human practice, we realized that the composition of sewage disposal was very complicated. There were usually more than one species of microorganism competing in the same environment, which may negatively affect the growth of target bacteria. By allowing our bacteria to produce biofilm, they could get an advantage of growth by sharing nutrients and getting sheltered from competitors.

Finally, we came up with the idea, using PHA plastic beads coated with biofilm and biofilm producing bacteria, then display laccase enzyme on biofilm by adding SpyTag to Biofilm and SpyCatcher to CotA laccase. PHA can also act as a carbon source to bacteria, maintaining growth of bacteria and production of biofilm for longer period. This may further reduce cost by replacing biomaterials less frequently.

IV. Public Education and Engagement

Our public education includes two sections: on campus and off campus activities.

On campus, we design and implement a layered education system, starting from series of lectures to all students, interviewing some students and evaluating their potential of being iGEMers, then our synthetic biology club offering them training in genetic engineering.

Off campus, we established the collaboration with sewage plant for exchanging the instructive information including biology, plant and policy. We strongly believe that the practicability of our project would attract more plants even business companies to cooperate with us.

a. On campus part

We conducted lectures of iGEM projects and synthetic biology techniques to students on Tuesday and Thursday weekly. At the start of our education program, we briefly introduced our project's purpose, effectiveness and future potential contribution to the environment. We also invited students who were interested in improving the environment by synthetic biology technologies. After that, we held a series of lectures explaining the molecular mechanism, and prove practicability of our project to the students who followed up our project.

For the whole process of education, we put a high value on the effectiveness of lecture. Therefore, we required students who is willing to cooperate our work to register their WeChat account, and asked randomly 75% of students each time to share their perspectives, so we could adjust and improve the content of our lecture. We also interviewed students to find future iGEMers.

Furthermore, in our synthetic biology club, we introduced some basic methods and techniques of genetic engineering such as DNA extraction, restriction enzyme digestion, Primer design, and PCR, reserving talented students for our further iGEM projects.

In general, our on-campus education program comprehensively passed on our experience in iGEM and synthetic biology knowledge. Our program had also triggered students’ concern on environmental problems, as well as their passion for learning synthetic biology and becoming a qualified iGEMer.

b. Off campus part

During the visit of a sewage treatment plant, we briefly introduced our project to work leaders, then we showed reliability of our project and resolution to protect the environment. On one side, sewage treatment plant helped us conduct the design of our program by providing first-hand information of sewage plant. On the other side, we offered more information of our modified biology treatment. As a result, both sides were looking forward to establishing a long-term collaboration.

V. Conclusion

In conclusion, through the biology method, we found that the expensive cost and decreasing effectiveness are two main problems for traditional biological treatment method. These experiences from human practice has inspired us with the idea of designing our Biofilm × Laccase system. In the near future, we will build a filter with PHA beads coated with laccase linked biofilm and optimize the filter for real world sewage treatment.