Difference between revisions of "Team:SHSBNU China/Model"

 
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<div style="height:5vw;" class="first_classfication" onmouseover="fcova()" onmouseout="fcoua()" id="fc_Project"><!--Project-->
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<a class="fc_link" style="height:100%; width:100%;" href="https://2018.igem.org/Team:SHSBNU_China/Project">
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<h4 class="fc_content">Project</h4>
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<div style="height:5vw;" class="first_classfication" onmouseover="fcovb()" onmouseout="fcoub()" id="fc_Experiment"><!--Experiment-->
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<a class="fc_link" style="height:100%; width:100%;" href="https://2018.igem.org/Team:SHSBNU_China/Experiments">
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<div style="height:5vw;" class="first_classfication" onmouseover="fcovc()" onmouseout="fcouc()" id="fc_Model"><!--Model-->
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<a class="fc_link" style="height:100%; width:100%;" href="https://2018.igem.org/Team:SHSBNU_China/Model">
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<h4 class="fc_content">Model</h4>
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<h4 class="fc_content">Human Practice</h4>
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<div style="height:5vw;" class="first_classfication" onmouseover="fcove()" onmouseout="fcoue()" id="fc_Demonstrate"><!--Demonstrate-->
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<h4 class="fc_content">Safety</h4>
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<div style="height:5vw; padding: 0vw; align-self: center; vertical-align: middle; display: table; line-height: 3vw;" class="first_classfication" onmouseover="fcovh()" onmouseout="fcouh()" id="fc_Team"><!--Team-->
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<a class="fc_link" style="height:100%; width:100%;" href="https://2018.igem.org/Team:SHSBNU_China/Team">
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<h4 style="padding-right: 0.30vw">Team</h4>
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<div id="header_title">
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<a href="https://2018.igem.org/Team:SHSBNU_China">
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<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2018.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2018.igem.org/Judging/Awards"> award listed below</a>. </p>
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<h6 id="menu_intro">Model</h6>
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2018.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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<a class="snd_class" href="https://2018.igem.org/Team:SHSBNU_China/Model">Model</a>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Model#Introduction">Introduction</a>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Model#Proof">Mathematical Proof</a>
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<div class="third_classfication">
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<a class="trd_class" href="https://2018.igem.org/Team:SHSBNU_China/Model#Conclusion">Conclusion</a>
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<div id="sec_title">
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<h1>Model</h1>
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<h2>I. Model</h2>
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<h3 id="Introduction">a. Introduction</h3>
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<div class="content">
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This model was created for describing the relationship between the concentration of the textile dye and the time.
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The reaction between enzyme and the substrate can be described by the following diagram:
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<img style="width:38vw; text-align:center; display:table-cell; vertical-align: middle" src="https://static.igem.org/mediawiki/2018/b/b7/T--SHSBNU_China--31100.png"/>
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<h3 id="Proof">b. Mathematical Proof</h3>
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<img style="width:38vw; text-align:center; display:table-cell; vertical-align: middle" src="https://static.igem.org/mediawiki/2018/b/b6/T--SHSBNU_China--30100.png"/>
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<h3 id="Conclusion">c. Conclusion</h3>
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<h1> Modeling</h1>
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<p>Mathematical models and computer simulations provide a great way to describe the function and operation of BioBrick Parts and Devices. Synthetic Biology is an engineering discipline, and part of engineering is simulation and modeling to determine the behavior of your design before you build it. Designing and simulating can be iterated many times in a computer before moving to the lab. This award is for teams who build a model of their system and use it to inform system design or simulate expected behavior in conjunction with experiments in the wetlab.</p>
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Therefore, the relationship between concentration of textile dye and time can be described by the equation:
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<h3> Gold Medal Criterion #3</h3>
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<p class="text">
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Convince the judges that your project's design and/or implementation is based on insight you have gained from modeling. This could be either a new model you develop or the implementation of a model from a previous team. You must thoroughly document your model's contribution to your project on your team's wiki, including assumptions, relevant data, model results, and a clear explanation of your model that anyone can understand.
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As shown in the equation, the concentration of textile dye decreases in a natural logarithm relationship when time increases.
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The model should impact your project design in a meaningful way. Modeling may include, but is not limited to, deterministic, exploratory, molecular dynamic, and stochastic models. Teams may also explore the physical modeling of a single component within a system or utilize mathematical modeling for predicting function of a more complex device.
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In the future developing, experiments need to be done to collect data and make regression for this function. Also, the function can be further developed by using Hill equation and Michaelis-Menten equation to estimate at the situation in which multiple enzymes on one PHA particle react with the substrate.  
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Please see the <a href="https://2018.igem.org/Judging/Medals"> 2018
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Medals Page</a> for more information.
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<p style="font-size:1vw;font-family:'Times New Roman';font-style:italic;color:#666666">SHSBNU_China 2018, Created by Azir</p>
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<h3>Best Model Special Prize</h3>
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To compete for the <a href="https://2018.igem.org/Judging/Awards">Best Model prize</a>, please describe your work on this page  and also fill out the description on the <a href="https://2018.igem.org/Judging/Judging_Form">judging form</a>. Please note you can compete for both the gold medal criterion #3 and the best model prize with this page.
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You must also delete the message box on the top of this page to be eligible for the Best Model Prize.
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<h3> Inspiration </h3>
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Here are a few examples from previous teams:
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<ul>
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<li><a href="https://2016.igem.org/Team:Manchester/Model">2016 Manchester</a></li>
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<li><a href="https://2016.igem.org/Team:TU_Delft/Model">2016 TU Delft</li>
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<li><a href="https://2014.igem.org/Team:ETH_Zurich/modeling/overview">2014 ETH Zurich</a></li>
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<li><a href="https://2014.igem.org/Team:Waterloo/Math_Book">2014 Waterloo</a></li>
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Latest revision as of 01:51, 18 October 2018

Model

Model

I. Model

a. Introduction

This model was created for describing the relationship between the concentration of the textile dye and the time.

The reaction between enzyme and the substrate can be described by the following diagram:

b. Mathematical Proof

c. Conclusion

Therefore, the relationship between concentration of textile dye and time can be described by the equation:

As shown in the equation, the concentration of textile dye decreases in a natural logarithm relationship when time increases.

In the future developing, experiments need to be done to collect data and make regression for this function. Also, the function can be further developed by using Hill equation and Michaelis-Menten equation to estimate at the situation in which multiple enzymes on one PHA particle react with the substrate.