Difference between revisions of "Team:HZAU-China/Design"

 
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                 <a class="item" href="https://2018.igem.org/Team:HZAU-China/InterLab">InterLab</a>
 
                 <a class="item" href="https://2018.igem.org/Team:HZAU-China/InterLab">InterLab</a>
 
                 <a class="item" href="https://2018.igem.org/Team:HZAU-China/Notebook">Notebook</a>
 
                 <a class="item" href="https://2018.igem.org/Team:HZAU-China/Notebook">Notebook</a>
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             </li>
 
             </li>
 
             <li class="hiLight shortName">
 
             <li class="hiLight shortName">
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                 <a class="item" href="https://2018.igem.org/Team:HZAU-China/Collaborations">Collaborations</a>
 
                 <a class="item" href="https://2018.igem.org/Team:HZAU-China/Collaborations">Collaborations</a>
 
             </li>
 
             </li>
             <li class="shortName">
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             <li class="hiLight shortName">
                 <a class="nav_head" href="https://2018.igem.org/Team:HZAU-China/Parts">
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                 <a class="nav_head" href="#">
 
                     <span>Parts</span>
 
                     <span>Parts</span>
 +
                    <span class="xjtPic"></span>
 
                 </a>
 
                 </a>
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                <a class="item" href="https://2018.igem.org/Team:HZAU-China/Basic_Part">Basic</a>
 +
                <a class="item" href="https://2018.igem.org/Team:HZAU-China/Composite_Part">Composite</a>
 
             </li>
 
             </li>
 
         </ul>
 
         </ul>
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                 <div class="h1">Overview</div>
 
                 <div class="h1">Overview</div>
 
                 <p>
 
                 <p>
                        In our project, we redesigned <i>Salmonella</i> to act as a delivery vehicle that can target tumor cells and replicate in their cytoplasm.
+
                    In our project, we redesigned <i>Salmonella</i> to act as a delivery vehicle that can target tumor
                        By inducing the bacterial expression of the N-terminal domain of Gasdermin D (GSDMD-N275),  
+
                    cells and replicate in their cytoplasm.
                        bacteria are led to lysis and release this protein into the cytoplasm of tumor cell and then induce pyroptosis to the tumor cell by making membrane pores.  
+
                    By inducing the bacterial expression of the N-terminal domain of Gasdermin D (GSDMD-N275),
                        The lysate of cell rupture during pyroptosis destroys the tumor microenvironment and attracts immune cells into tumor bed to kill tumor cells.
+
                    bacteria are led to lysis and release this protein into the cytoplasm of tumor cell and then induce
                          Our project which aims to induce pyroptosis to tumor cells provides a new approach for cancer therapy (<b>Figure 1</b>).
+
                    pyroptosis to the tumor cell by making membrane pores.
 +
                    The lysate of cell rupture during pyroptosis destroys the tumor microenvironment and attracts
 +
                    immune cells into tumor bed to kill tumor cells.
 +
                    Our project which aims to induce pyroptosis to tumor cells provides a new approach for cancer
 +
                    therapy (<b>Figure 1</b>).
 
                 </p>
 
                 </p>
                 <img src="" width="100%" alt="">
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                 <div style="width: 70%; margin: 0px auto">
                 <p><b>Figure 1.</b> Overall Design Circuit</p>
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                    <img src="https://static.igem.org/mediawiki/2018/2/20/T--HZAU-China--design1.jpg" width="100%" alt="">
 +
                </div>
 +
                 <p style="width: 100%; text-align: center !important;"><b>Figure 1.</b> Overall circuit design.</p>
  
 
             </div>
 
             </div>
 +
 
             <div id="float02" class="cur">
 
             <div id="float02" class="cur">
 
                 <div class="h1">Chassis</div>
 
                 <div class="h1">Chassis</div>
                 <p>This year, we chose <i>Salmonella enterica</i> serovar Typhimurium str. SL1344 as our chassis.  
+
                 <p>This year, we chose <i>Salmonella enterica</i> serovar Typhimurium str. SL1344 as our chassis.
                     The reason why we chose Salmonella as our carrier are based on following reason.  
+
                     Why we chose Salmonella as our carrier is based on the following reasons. First, GSDMD-N275 can
                    First, in consideration of GSDMD-N275 induced pyroptosis only happens when delivered cytosolically but not extracellularly,
+
                    only induce pyroptosis from the inside of a cell, therefore Salmonella is a brilliant candidate as
                    <i>Salmonella</i> is a brilliant candidate as an intracellular parasite.
+
                    an intracellular parasite. Second, Salmonella is a widely used carrier to cancer therapy because
                      Second, <i>Salmonella</i> is a widely used vector to cancer therapy because its natural taxis to tumor.
+
                    its natural taxis to tumor (<b>Figure 2</b>).
                      However, feedbacks from human practice suggested that we should consider more about our safety in design and experiment. (See more details in <a href="">Human Practice</a>.)
+
                    However, feedbacks from human practice suggested that we should consider more about the safety in
                      Therefore, we make efforts to improve safety of our project through knocking out <i>sifA</i> and displaying RGD motif on <i>Salmonella</i>.</p><br><br>
+
                    our
 
+
                    design and experiment. (See more details in <a href="">Human Practice</a>.)
                      <p>
+
                    Therefore, we make efforts to improve safety of our project through knocking out <i>sifA</i> and
                      <i>sifA</i> locates in <i>Salmonella</i> pathogenicity island,  
+
                    displaying RGD motif on <i>Salmonella</i>.</p><br>
                      taking the role of maintaining the stability of <i>Salmonella</i>-Containing Vacuole (SCV) where <i>Salmonella</i> survive and replicate in host cells.  
+
                <div style="width: 80%; margin: 0px auto">
                      Because of the unstable SCV, growth inhibition of <i>ΔsifA</i> mutant in macrophage is remarkable<sup>1</sup>.
+
                    <img src="https://static.igem.org/mediawiki/2018/7/7a/T--HZAU-China--design2.jpg" width="100%">
                        Thus, with the view of reducing virulence of Salmonella, <i>sifA</i> was knocked out in our project.
+
                </div>
                      </p><br><br>
+
                <p style="width: 100%; text-align: center !important;"><b>Figure 2</b>. <i>Salmonella</i> has natural
                      <p>
+
                    taxis to tumor.</p><br>
                            RGD motif (Arg-Gly-Asp) is a well-studied tumor homing tripeptide that specifically binds to alpha v beta 3 (αvβ3) integrin,
+
                <p>
                            which is a biomarker of cancer cells and widely overexpressed on cancer cells and blood vessels during cancer angiogenesis<sup>2</sup>.  
+
                    <i>sifA</i> locates in <i>Salmonella</i> pathogenicity island,
                            In order to enhance targeting of bacteria to tumor, RGD motif is displayed on OmpA, an outer membrane protein of bacteria (<b>Figure 2</b>).
+
                    taking the role of maintaining the stability of <i>Salmonella</i>-Containing Vacuole (SCV) when <i>Salmonella</i>
                      </p><br><br>
+
                    survive and replicate in host cells.
                      <p>Finally, the safety of our project is successfully demonstrated by a set of experiments using engineered bacteria mentioned above. (See more details in Result.)</p>
+
                    Because of the unstable SCV, growth inhibition of <i>ΔsifA</i> mutant in macrophage is remarkable<sup>1</sup>.
                      <img src="" width="100%" alt="">
+
                    Thus, to reduce virulence of Salmonella, <i>sifA</i> was knocked out in our
                      <p><b>Figure 2.</b> Realization of tumor targeting through surface displaying RGD motif.</p>
+
                    project (<b>Figure 3</b>).
 +
                </p>
 +
                <div style="width: 80%; margin: 0px auto">
 +
                    <img src="https://static.igem.org/mediawiki/2018/a/a3/T--HZAU-China--design3.jpg" width="100%">
 +
                </div>
 +
                <p style="width: 100%; text-align: center !important;"><b>Figure 3</b>. Schematic diagram of <i>sifA</i>
 +
                    mutant in macrophage.</p>
 +
                <br>
 +
                <p>
 +
                    RGD motif (Arg-Gly-Asp) is a well-studied tumor homing tripeptide that specifically binds to alpha
 +
                    v beta 3 (αvβ3) integrin,
 +
                    which is a biomarker of cancer cells and widely overexpressed in cancer cells and blood vessels
 +
                    during cancer angiogenesis<sup>2</sup>.
 +
                    In order to enhance targeting of bacteria to tumor, RGD motif is displayed on OmpA, an outer
 +
                    membrane protein of bacteria (<b>Figure 4</b>).
 +
                </p><br>
 +
                <p>Finally, the safety of our project is successfully demonstrated by a set of experiments using
 +
                    engineered bacteria mentioned above. (See more details in <a href="https://2018.igem.org/Team:HZAU-China/Results">Results</a>.)</p>
 +
                <div style="width: 80%; margin: 0px auto">
 +
                    <img src="https://static.igem.org/mediawiki/2018/e/e1/T--HZAU-China--design4.jpg" width="100%">
 +
                </div>
 +
                <p style="width: 100%; text-align: center !important;"><b>Figure 4.</b> Realization of tumor targeting
 +
                    through surface displaying RGD motif.</p>
  
  
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             <div id="float03" class="cur">
 
             <div id="float03" class="cur">
                    <div class="h1">ATc-dependent expression of GSDMD-N275</div>
+
                <div class="h1">ATc-dependent expression of GSDMD-N275</div>
                    <p>
+
                <p>
                            We use anhydrotetracycline transcriptional regulation system to regulate the expression of GSDMD-N275 in our project because of its low expression noise,
+
                    We use anhydrotetracycline transcriptional regulation system to regulate the expression of
                            high response speed and great linear relation between the inducer and the expression of upstream gene<sup>3</sup>. With the presence of anhydrotetracycline (ATc),
+
                    GSDMD-N275 in our project because of its low expression noise,
                              repressor TetR which under the control of tet promoter (P<sub>tet</sub>) will integrate with ATc and Mg<sup>2+</sup> result in expression of GSDMD-N275 (<b>Figure 3</b>).
+
                    high response speed and great linear relation between the inducer and the expression of downstream
                              Finally, this system is successfully used to express GSDMD-N275 in Salmonella and induce host cell pyroptosis. (See more details in <a herf="https://2018.igem.org/Team:HZAU-China/Results">Result</a>.)  
+
                    gene<sup>3</sup>. With the presence of anhydrotetracycline (ATc),
                    </p>
+
                    the repressor TetR which is under the control of tet promoter (P<sub>tet</sub>) will combine with
 +
                    ATc
 +
                    and Mg<sup>2+</sup>, resulting in expression of GSDMD-N275 (<b>Figure 5</b>).
 +
                    Finally, this system is successfully used to express GSDMD-N275 in Salmonella and induces host cell
 +
                    pyroptosis. (See more details in <a href="https://2018.igem.org/Team:HZAU-China/Results">Results</a>.)
 +
                </p>
  
                 <p><b>Figure 3. </b>Schematic Diagram of ATc-dependent expression of GSDMD-N275. <p>
+
                 <div style="width: 60%; margin: 0px auto">
            </div>
+
          <div style="width: 80%; margin: 30px auto">
+
 
                     <img src="https://static.igem.org/mediawiki/2018/2/23/T--HZAU-China--tetr2.png" width="100%" alt="">
 
                     <img src="https://static.igem.org/mediawiki/2018/2/23/T--HZAU-China--tetr2.png" width="100%" alt="">
          </div>
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                </div>
            <div id="float04" class="cur">
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                <div style="width: 80%; margin: 0px auto">
                     <div class="h1">Intracellular environment-dependent expression of GSDMD-N275</div>
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                     <img src="https://static.igem.org/mediawiki/2018/9/9b/T--HZAU-China--design5.jpg" width="100%">
            <p>As an intracellular parasite, some intracellular environment-dependent genes such as <i>sifA</i> are existed in <i>Salmonella</i><sup>4</sup>.
+
                </div>
                Therefore, this event shows an approach for us to implement specific expression of GSDMD-N275. We utilized regulatory part from the
+
                <p style="width: 100%; text-align: center !important;"><b>Figure 5. </b>Schematic diagram of
                upstream of <i>sifA</i> (P<sub>sifA</sub>) to control the expression of GSDMD-N275 (<b>Figure 4</b>). Ultimately, we successfully demonstrated the intracellular specificty of P<sub>sifA</sub>
+
                    ATc-dependent expression of GSDMD-N275. <p>
                .(See more details in <a href="">Result</a>.)
+
            </p>
+
            <img src="https://static.igem.org/mediawiki/2018/5/54/T--HZAU-China--sifA.png" width="100%" alt="">
+
            <p><b>Figure 4.</b> Schematic Diagram of Intracellular Environment-dependent Expression of GSDMD-N275</p>
+
 
             </div>
 
             </div>
 +
            <div id="float04">
 +
                <div class="h1">Intracellular environment-dependent expression of GSDMD-N275</div>
 +
                <p>As an intracellular parasite, some intracellular environment-dependent genes such as <i>sifA</i>
 +
                    exist in <i>Salmonella</i><sup>4</sup>.
 +
                    Therefore, this feature gives an approach for us to implement specific expression of
 +
                    GSDMD-N275. We utilized the regulatory part from the upstream of <i>sifA</i> (P<sub>sifA</sub>) to
 +
                    control the expression of GSDMD-N275 (<b>Figure 6</b>).
 +
                    Ultimately, we successfully demonstrated the intracellular specificty of P<sub>sifA</sub>.
 +
                  (See more details in <a href="https://2018.igem.org/Team:HZAU-China/Results">Results</a>.)
 +
                </p>
 +
                <div style="width: 60%; margin: 0px auto">
 +
                    <img src="https://static.igem.org/mediawiki/2018/5/54/T--HZAU-China--sifA.png" width="100%" alt="">
 +
                </div>
 +
                <div style="width: 80%; margin: 0px auto">
 +
                    <img src="https://static.igem.org/mediawiki/2018/1/14/T--HZAU-China--design6.jpg" width="100%">
 +
                </div>
 +
                <p style="width: 100%; text-align: center !important;"><b>Figure 6.</b> Schematic diagram of
 +
                    intracellular environment-dependent expression of GSDMD-N275.</p>
 +
            </div>
 +
 +
 
             <div id="float05">
 
             <div id="float05">
 
                 <div class="h1">Reference</div>
 
                 <div class="h1">Reference</div>
                 <p> 1. Thurston, T. L. et al. Growth inhibition of cytosolic Salmonella by caspase-1 and caspase-11 precedes host cell death. Nature communications 7, 13292, doi:10.1038/ncomms13292 (2016).</p>
+
                 <p> 1. Thurston, T. L. et al. Growth inhibition of cytosolic Salmonella by caspase-1 and caspase-11
                 <p>2. Danhier, F., Le Breton, A. & Preat, V. RGD-based strategies to target alpha(v) beta(3) integrin in cancer therapy and diagnosis. Mol Pharm 9, 2961-2973, doi:10.1021/mp3002733 (2012).</p>
+
                    precedes host cell death. Nature communications 7, 13292, doi:10.1038/ncomms13292 (2016).</p>
                 <p>3.Nevozhay, D. Negative autoregulation linearizes the dose–response and suppresses the heterogeneity of gene expression. PNAS 106
+
                 <p>2. Danhier, F., Le Breton, A. & Preat, V. RGD-based strategies to target alpha(v) beta(3) integrin
5123-5128, doi:10.1073/pnas.0809901106 (2008).
+
                    in cancer therapy and diagnosis. Mol Pharm 9, 2961-2973, doi:10.1021/mp3002733 (2012).</p>
</p>
+
                 <p>3. Nevozhay, D. Negative autoregulation linearizes the dose–response and suppresses the
                 <p>4. Garmendia, J., Beuzon, C. R., Ruiz-Albert, J. & Holden, D. W. The roles of SsrA-SsrB and OmpR-EnvZ in the regulation of genes encoding the Salmonella typhimurium SPI-2 type III secretion system. Microbiology 149, 2385-2396, doi:10.1099/mic.0.26397-0 (2003).</p>
+
                    heterogeneity
               
+
                    of gene expression. PNAS 106
 +
                    5123-5128, doi:10.1073/pnas.0809901106 (2008).
 +
                </p>
 +
                 <p>4. Garmendia, J., Beuzon, C. R., Ruiz-Albert, J. & Holden, D. W. The roles of SsrA-SsrB and
 +
                    OmpR-EnvZ in the regulation of genes encoding the Salmonella typhimurium SPI-2 type III secretion
 +
                    system. Microbiology 149, 2385-2396, doi:10.1099/mic.0.26397-0 (2003).</p>
 
             </div>
 
             </div>
 
         </div>
 
         </div>
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             <div class="floatCtro">
 
             <div class="floatCtro">
                 <p class="daohanger">Modification of Bacteria</p>
+
                 <p class="daohanger">Overview</p>
                 <p class="daohanger">Targeting</p>
+
                 <p class="daohanger">Chassis</p>
                 <p class="daohanger">Regulation of pyroptosis</p>
+
                <p class="daohanger">ATc-dependent expression of GSDMD-N275</p>
 +
                 <p class="daohanger">Intracellular environment-dependent expression of GSDMD-N275</p>
 
                 <p class="daohanger">Reference</p>
 
                 <p class="daohanger">Reference</p>
 
                 <a>
 
                 <a>
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Latest revision as of 02:10, 18 October 2018

Overview

In our project, we redesigned Salmonella to act as a delivery vehicle that can target tumor cells and replicate in their cytoplasm. By inducing the bacterial expression of the N-terminal domain of Gasdermin D (GSDMD-N275), bacteria are led to lysis and release this protein into the cytoplasm of tumor cell and then induce pyroptosis to the tumor cell by making membrane pores. The lysate of cell rupture during pyroptosis destroys the tumor microenvironment and attracts immune cells into tumor bed to kill tumor cells. Our project which aims to induce pyroptosis to tumor cells provides a new approach for cancer therapy (Figure 1).

Figure 1. Overall circuit design.

Chassis

This year, we chose Salmonella enterica serovar Typhimurium str. SL1344 as our chassis. Why we chose Salmonella as our carrier is based on the following reasons. First, GSDMD-N275 can only induce pyroptosis from the inside of a cell, therefore Salmonella is a brilliant candidate as an intracellular parasite. Second, Salmonella is a widely used carrier to cancer therapy because its natural taxis to tumor (Figure 2). However, feedbacks from human practice suggested that we should consider more about the safety in our design and experiment. (See more details in Human Practice.) Therefore, we make efforts to improve safety of our project through knocking out sifA and displaying RGD motif on Salmonella.


Figure 2. Salmonella has natural taxis to tumor.


sifA locates in Salmonella pathogenicity island, taking the role of maintaining the stability of Salmonella-Containing Vacuole (SCV) when Salmonella survive and replicate in host cells. Because of the unstable SCV, growth inhibition of ΔsifA mutant in macrophage is remarkable1. Thus, to reduce virulence of Salmonella, sifA was knocked out in our project (Figure 3).

Figure 3. Schematic diagram of sifA mutant in macrophage.


RGD motif (Arg-Gly-Asp) is a well-studied tumor homing tripeptide that specifically binds to alpha v beta 3 (αvβ3) integrin, which is a biomarker of cancer cells and widely overexpressed in cancer cells and blood vessels during cancer angiogenesis2. In order to enhance targeting of bacteria to tumor, RGD motif is displayed on OmpA, an outer membrane protein of bacteria (Figure 4).


Finally, the safety of our project is successfully demonstrated by a set of experiments using engineered bacteria mentioned above. (See more details in Results.)

Figure 4. Realization of tumor targeting through surface displaying RGD motif.

ATc-dependent expression of GSDMD-N275

We use anhydrotetracycline transcriptional regulation system to regulate the expression of GSDMD-N275 in our project because of its low expression noise, high response speed and great linear relation between the inducer and the expression of downstream gene3. With the presence of anhydrotetracycline (ATc), the repressor TetR which is under the control of tet promoter (Ptet) will combine with ATc and Mg2+, resulting in expression of GSDMD-N275 (Figure 5). Finally, this system is successfully used to express GSDMD-N275 in Salmonella and induces host cell pyroptosis. (See more details in Results.)

Figure 5. Schematic diagram of ATc-dependent expression of GSDMD-N275.

Intracellular environment-dependent expression of GSDMD-N275

As an intracellular parasite, some intracellular environment-dependent genes such as sifA exist in Salmonella4. Therefore, this feature gives an approach for us to implement specific expression of GSDMD-N275. We utilized the regulatory part from the upstream of sifA (PsifA) to control the expression of GSDMD-N275 (Figure 6). Ultimately, we successfully demonstrated the intracellular specificty of PsifA. (See more details in Results.)

Figure 6. Schematic diagram of intracellular environment-dependent expression of GSDMD-N275.

Reference

1. Thurston, T. L. et al. Growth inhibition of cytosolic Salmonella by caspase-1 and caspase-11 precedes host cell death. Nature communications 7, 13292, doi:10.1038/ncomms13292 (2016).

2. Danhier, F., Le Breton, A. & Preat, V. RGD-based strategies to target alpha(v) beta(3) integrin in cancer therapy and diagnosis. Mol Pharm 9, 2961-2973, doi:10.1021/mp3002733 (2012).

3. Nevozhay, D. Negative autoregulation linearizes the dose–response and suppresses the heterogeneity of gene expression. PNAS 106 5123-5128, doi:10.1073/pnas.0809901106 (2008).

4. Garmendia, J., Beuzon, C. R., Ruiz-Albert, J. & Holden, D. W. The roles of SsrA-SsrB and OmpR-EnvZ in the regulation of genes encoding the Salmonella typhimurium SPI-2 type III secretion system. Microbiology 149, 2385-2396, doi:10.1099/mic.0.26397-0 (2003).

Description
Design

Overview

Chassis

ATc-dependent expression of GSDMD-N275

Intracellular environment-dependent expression of GSDMD-N275

Reference

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Results Demonstrate