Difference between revisions of "Team:AHUT China/Demonstrate"

 
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                <div align="center"> <h2 class="title_color">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Introduction</h2></div>
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                <p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆'; font-style: normal; font-weight: 400; font-size: 36px; text-align: center;"><strong style="font-family: Segoe, 'Segoe UI', 'DejaVu Sans', 'Trebuchet MS', Verdana, sans-serif; font-style: normal; font-weight: 400;color: #000000;"> Demonstrate
                  <p>We took part in the Fifth International InterLab Measurement Study which ains to achieve the purpose of comparative measurement. The goal of this study is to obtain large amounts of data from labs across the world,to develop absolute units for measurements GFP in a plate reader to eliminate variation between labs.</p><br>
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</strong></h2>
<div align="center"><h2 class="title_color">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Materials</h2></div>
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                <hr>
                  <p>Plate reader: Synergy H1 (Biotek)<br>
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                <nbsp><nbsp>
Plate reader plates: Corning 3603 96-Well Microplates (black plates with clear flat bottom)<br>
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                  <p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 18px;">In our project, we have improved the existing CO<span style="font-size: 12px">2</span> capture technology and optimized the existing carbonic anhydrase by molecular simulation to finally enable E. coli to express more active and stable carbonic anhydrase to capture CO<span style="font-size: 12px">2</span> from industrial waste gas. Now we have constructed and tested the CO<span style="font-size: 12px">2</span> capture system based on pET30-a (+) expression vectors and E. coli BL21(DE3) strains under simulated condition in laboratory. Our main achievements are as follows:
Cell culture shaker: ZWYR-200D<br><br>
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<br>
Devices:<br>
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1. The CA2 with high and stable catalytic efficiency designed by molecular simulation was selected as the research object of our project, which provided the basis for further development of CO<span style="font-size: 12px">2</span> capture.<br>
Negative control :BBa_R0040 <br>
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2. Using molecular simulation to optimize CA2 amino acid sequence, design a highly active and stable CA2 mutant with the 203th leucine changed to lysine (named CA2 (L203K))<br>
Positive control :BBa_I20270 <br>
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3. Mutant CA2 (L203K) is more efficient than wild-type CA2(WT).<br>
Device 1: BBa_J364000  <br>
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4. The mutant CA2(L203K) presents improved thermal stability compared to wild-type CA2(WT).
Device 2: BBa_J364001  <br>
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</p>
Device 3: BBa_J364002  <br>
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<br>
Device 4: BBa_J364007  <br>
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<h3>Colorimetric assay of enzyme activity</h3>
Device 5: BBa_J364008  <br>
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<h4>Detection device:</h4>
Device 6: BBa_J364009  <br>
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<br><br><br>
Note: for Device 5, we have not transformed it into DH5⍺ competent cells successfully for many times, therefore, we thank IGEM team of Nanjing University for providing the Device 5.<br>
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<div align="center"><img src="
Calibration material: Provided in the 2018 IGEM distribution kit <br>
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https://static.igem.org/mediawiki/2018/e/ee/T--AHUT_China--_demon12.jpg" width="800" alt=""/></div>
Microorganism: Escherichia coli DH5⍺ strains<br>
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 14px;text-align: center;">Fig.1 Detection device:</p>  
</p><br>
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<br><br><br>
<div align="center"><h2 class="title_color">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Methods</h2></div>
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 18px;">CA2 activity assay with CO<span style="font-size: 12px">2</span> as substrate was performed following the procedure described by Capasso. In brief, The CO<span style="font-size: 12px">2</span>-satured solution was prepared by bubbling CO<span style="font-size: 12px">2</span> into 100 mL distilled water for approximately 3 h. The CO<span style="font-size: 12px">2</span> solution was chilled in an ice-water bath. Add 1 mL of 25 mM Tris, pH 8.3, containing bromothymol blue as a dye (to give a distinct and visible blue color) to test tubes chilled in an ice bath. Indicated volume of purified enzyme were added to tubes, and an equivalent amount of buffer was added as control. Then, 1 mL of CO<span style="font-size: 12px">2</span> solution was added very quickly and simultaneously timing began. The time required for the solution to change from blue to yellow was recorded (transition point of bromothymol blue is pH 6-7.6). The time required for the color change is inversely related to the quantity of carbonic anhydrase presented in the sample.</p>
                  <p>Following iGEM requirements, Team AHUT_China performed measurements according to these 2018 InterLab Protocols <a href="https://static.igem.org/mediawiki/2018/0/09/2018_InterLab_Plate_Reader_Protocol.pdf">https://static.igem.org/mediawiki/2018/0/09/2018_InterLab_Plate_Reader_Protocol.pdf</a> </p><br>
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<br><br><br>
<div align="center"><h2 class="title_color">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Results</h2></div>
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<div align="center"><img src="
                  <h4>1.OD 600 reference point</h4><p>
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https://static.igem.org/mediawiki/2018/a/ab/T--AHUT_China--_demonstrate2.jpg" width="800" alt=""/></div>
Using OD 600 and H2O to generate the conversion factor for the transformation later. The average of OD600 is 0.063; the correction factor (OD600/ABS600) is 3.500
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 14px;text-align: center;">Fig.2 The color changes of the solution after adding  250 μLCO<span style="font-size: 12px">2</span> saturated solution.</p>
</p><br>
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<br><br><br>
  <div align="center"><img src="https://static.igem.org/mediawiki/2018/c/cb/T--AHUT_China--_LUDOX_correct_result.jpg" width="317" height="234" alt=""/></div><br><div align="center">Fig. 1 LUDOX correct value
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<div align="center"><img src="
  </div>
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https://static.igem.org/mediawiki/2018/a/a0/T--AHUT_China--_demon45978.jpg" width="800" alt=""/></div>
  <h4>2.Particle standard curve</h4>
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 14px;text-align: center;">Fig.3 Comparison of color changing time of CO<span style="font-size: 12px">2</span> saturated solution
                  <p>
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</p>  
We obtained the two Particle Standard Curve (normal and log scale).
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<br><br><br>
</p><br>
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<div align="center"><img src="
  <div align="center"><img src="https://static.igem.org/mediawiki/2018/6/65/T--AHUT_China--_Fig._2_Particle_Standard_Curve.jpg" width="701" height="440" alt=""/></div><br><div align="center">Fig. 2 Particle Standard Curve
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https://static.igem.org/mediawiki/2018/5/52/T--AHUT_China--_demon148.jpg" width="800" alt=""/></div>
  </div>
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 14px;text-align: center;">Fig.4 Comparison of unit carbonic anhydrase enzyme activity between wild type and mutant type of CA2
<div align="center"><img src="https://static.igem.org/mediawiki/2018/7/7e/T--AHUT_China--_Fig._3_Particle_Standard_Curve_%28log_scale%29.jpg" width="701" height="440" alt=""/></div><br><div align="center">
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</p>  
  Fig. 3 Particle Standard Curve (log scale)
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<br><br><br>
</div>
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 18px;">As shown in Fig.3 and Fig.4, by the measurement of the enzyme activity, the result showed that the activity of the mutant CA2 was stronger than that of the wild type CA2.</p>
<h4>3.Fluorescein standard curve</h4><p>
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<br><br><br>
Dilution serious of fluorescein were prepared and measured in a 96 well plate. A standard curve is generated to correct the cell based readings to an equivalent fluorescein concentration.<br>
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<h3>Determination of thermal stability of carbonic anhydrase by esterase activity analysis</h3>
We obtained the two Fluorescein Standard Curve (normal and log scale).
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 18px;">In order to verify that our research results can be applied to higher temperature industrial environments in the future, we designed a gradient temperature to test the activity of wide type and mutant CA2 activity at different temperatures.</p>
</p><br>
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<br><br><br>
 
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<div align="center"><img src="
<div align="center"><img src="https://static.igem.org/mediawiki/2018/2/24/T--AHUT_China--_Fig._4_Fluorescein_Standard_Curve.jpg" width="701" height="440" alt=""/></div><br><div align="center">
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https://static.igem.org/mediawiki/2018/7/73/T--AHUT_China--_demonstrate5.jpg" width="650" alt=""/></div>
  Fig. 4 Fluorescein Standard Curve
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 14px;text-align: center;">Fig.5 Activity of wild type and mutant CA2 at different temperatures
</div>
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</p>  
<div align="center"><img src="https://static.igem.org/mediawiki/2018/a/a9/T--AHUT_China--_Fig._5_Fluorescein_Standard_Curve_%28log_scale%29.jpg" width="701" height="440" alt=""/></div><br><div align="center">
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<br><br>
  <div align="center" >Fig. 5 Fluorescein Standard Curve (log scale) </div>
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆';  font-size: 18px;">As shown in Fig.5, the results exhibited that the thermal stability of mutant carbonic anhydrase was better than that of wild carbonic anhydrase.
</div>
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</p>
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<br><br><br><br>
  <h4>4.Cell measurements</h4>
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<h3>Reference</h3>
  </ol>
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<p style="font-family: 'Arial Unicode MS', 'Microsoft YaHei UI', 'Microsoft YaHei UI Light', '华文细黑', '微软雅黑', '幼圆'; font-size: 18px;">
<p>&nbsp;</p><br>
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[1] Rahman F A, Aziz M M A, Saidur R, et al. Pollution to solution: Capture and sequestration of carbon dioxide (CO<span style="font-size: 12px">2</span>) and its utilization as a renewable energy source for a sustainable future[J]. Renewable & Sustainable Energy Reviews, 2017, 71:112-126. <br>
 
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[2] Hu G, Smith K H, Nicholas N J, et al. Enzymatic carbon dioxide capture using a thermally stable carbonic anhydrase as a promoter in potassium carbonate solvents[J]. Chemical Engineering Journal, 2017, 307:49-55.<br>
<div align="center"><img src="https://static.igem.org/mediawiki/2018/2/21/T--AHUT_China--_Fig._6_Fluorescence_Measurements_Curve_.jpg" width="732" height="492" alt=""/></div><br><div align="center">
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[3] Yong J K J, Stevens G W, Caruso F, et al. The use of carbonic anhydrase to accelerate carbon dioxide capture processes[J]. Journal of Chemical Technology & Biotechnology, 2015, 90(1):3-10.<br>
  <div align="center">Fig. 6 Fluorescence Measurements Curve</div>
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[4] Capasso C, De L V, Carginale V, et al. Biochemical properties of a novel and highly thermostable bacterial α-carbonic anhydrase from Sulfurihydrogenibium yellowstonense YO3AOP1[J]. Journal of Enzyme Inhibition & Medicinal Chemistry, 2012, 27(6):892.<br></p>
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    <p>Test devices 1 and 4 show high fluorescence intensity. Test devices 2 show a modest fluorescence intensity alone with positive control group, while devices3,5,6 barely show low fluorescence intensity alone with the negative control group.
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<div align="center"><img src="https://static.igem.org/mediawiki/2018/3/36/T--AHUT_China--_Fig._7_Raw_OD600_Curve_.jpg" width="724" height="484" alt=""/></div><br><div align="center">
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  <div align="center">Fig. 7 Raw OD600 Curve</div>
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    <h4>5.We obtained the Colony Forming Units per 0.1 OD600 E. coli cultures</h4>  
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<div align="center"><img src="https://static.igem.org/mediawiki/2018/f/f1/T--AHUT_China--_Fig._8_CFU_Result.jpg" width="724" height="420" alt=""/></div><br>
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    <div align="center"><img src="https://static.igem.org/mediawiki/2018/e/e5/T--AHUT_China--_Fig._8_CFU_Result1.jpg" width="732" height="492" alt=""/></div><br>
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  <div align="center" >Fig. 8 CFU Result</div>
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<div align="center"><h2 class="title_color">Discussion</h2></div>
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                <p>For Figure 3, the log graph isn’t a straight line but not 1:1 slope. In figure 6, highest fluorescence was obtained from device 4, closely followed by test device 1. Test device 2 and positive control group show a modest fluorescence intensity and device 5,6 show low fluorescence intensity, while test devices 3 barely have any fluorescence signal as well as the negative group.
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<div align="center"><h2 class="title_color">Conclusion</h2></div>
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                <p>It was certainly a technical challenge to Participate in the InterLab Study. Performing the prescribed protocols with adherence to all the InterLab guidelines yielded parts of expected results, and with the completed InterLab Google Forms, confirms our team participation in this InterLab Study.
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Latest revision as of 03:07, 18 October 2018

Royal Hotel Royal Hotel







Demonstrate


In our project, we have improved the existing CO2 capture technology and optimized the existing carbonic anhydrase by molecular simulation to finally enable E. coli to express more active and stable carbonic anhydrase to capture CO2 from industrial waste gas. Now we have constructed and tested the CO2 capture system based on pET30-a (+) expression vectors and E. coli BL21(DE3) strains under simulated condition in laboratory. Our main achievements are as follows:
1. The CA2 with high and stable catalytic efficiency designed by molecular simulation was selected as the research object of our project, which provided the basis for further development of CO2 capture.
2. Using molecular simulation to optimize CA2 amino acid sequence, design a highly active and stable CA2 mutant with the 203th leucine changed to lysine (named CA2 (L203K))
3. Mutant CA2 (L203K) is more efficient than wild-type CA2(WT).
4. The mutant CA2(L203K) presents improved thermal stability compared to wild-type CA2(WT).


Colorimetric assay of enzyme activity

Detection device:




Fig.1 Detection device:




CA2 activity assay with CO2 as substrate was performed following the procedure described by Capasso. In brief, The CO2-satured solution was prepared by bubbling CO2 into 100 mL distilled water for approximately 3 h. The CO2 solution was chilled in an ice-water bath. Add 1 mL of 25 mM Tris, pH 8.3, containing bromothymol blue as a dye (to give a distinct and visible blue color) to test tubes chilled in an ice bath. Indicated volume of purified enzyme were added to tubes, and an equivalent amount of buffer was added as control. Then, 1 mL of CO2 solution was added very quickly and simultaneously timing began. The time required for the solution to change from blue to yellow was recorded (transition point of bromothymol blue is pH 6-7.6). The time required for the color change is inversely related to the quantity of carbonic anhydrase presented in the sample.




Fig.2 The color changes of the solution after adding 250 μLCO2 saturated solution.




Fig.3 Comparison of color changing time of CO2 saturated solution




Fig.4 Comparison of unit carbonic anhydrase enzyme activity between wild type and mutant type of CA2




As shown in Fig.3 and Fig.4, by the measurement of the enzyme activity, the result showed that the activity of the mutant CA2 was stronger than that of the wild type CA2.




Determination of thermal stability of carbonic anhydrase by esterase activity analysis

In order to verify that our research results can be applied to higher temperature industrial environments in the future, we designed a gradient temperature to test the activity of wide type and mutant CA2 activity at different temperatures.




Fig.5 Activity of wild type and mutant CA2 at different temperatures



As shown in Fig.5, the results exhibited that the thermal stability of mutant carbonic anhydrase was better than that of wild carbonic anhydrase.





Reference

[1] Rahman F A, Aziz M M A, Saidur R, et al. Pollution to solution: Capture and sequestration of carbon dioxide (CO2) and its utilization as a renewable energy source for a sustainable future[J]. Renewable & Sustainable Energy Reviews, 2017, 71:112-126.
[2] Hu G, Smith K H, Nicholas N J, et al. Enzymatic carbon dioxide capture using a thermally stable carbonic anhydrase as a promoter in potassium carbonate solvents[J]. Chemical Engineering Journal, 2017, 307:49-55.
[3] Yong J K J, Stevens G W, Caruso F, et al. The use of carbonic anhydrase to accelerate carbon dioxide capture processes[J]. Journal of Chemical Technology & Biotechnology, 2015, 90(1):3-10.
[4] Capasso C, De L V, Carginale V, et al. Biochemical properties of a novel and highly thermostable bacterial α-carbonic anhydrase from Sulfurihydrogenibium yellowstonense YO3AOP1[J]. Journal of Enzyme Inhibition & Medicinal Chemistry, 2012, 27(6):892.