Difference between revisions of "Team:H14Z1 Hangzhou/Collaborations"

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<h1>Collaborations</h1>
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            <img src="https://static.igem.org/mediawiki/2018/8/8d/T--H14Z1_Hangzhou--head_Collaborations.jpg" alt="" class="head_div_img" />
 
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            <div class="content_box">
<p>
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                <h1 class="content_title">Collaborations</h1>
Sharing and collaboration are core values of iGEM. We encourage you to reach out and work with other teams on difficult problems that you can more easily solve together.
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                <div class="content_conts">
</p>
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                    <!------------------------Liver function and protection------------------------------ -->
 
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                    <h3 class="content_subtitle">Collaborations with SZU-China</h3>
<h3>Silver Medal Criterion #2</h3>
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                    <p class="content_context" style="text-indent:2em; text-align:justify">
<p>
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                        This year, we made a collaboration with SZU-China in Shenzhen University. We helped them make
Complete this page if you intend to compete for the silver medal criterion #2 on collaboration. Please see the <a href="https://2018.igem.org/Judging/Medals">2018 Medals Page</a> for more information.
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                        some new content of their WeChat-based Mini Program. We gave them detailed feedback after using
</p>
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                        it, and shared our familiar experience with them about how to promote it to more and more high
</div>
+
                        schools. In return, they did much work to screen several compatible strains, which were used by
 
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                        us to screen the suitable strain to produce our “smart yogurts ” combined with our constructed
<div class="column two_thirds_size">
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                        L. lactis. They went to the supermarket, bought various bands and different conditions of
 
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                        yogurt for them, including Classy·Kiss and CHENGUANG DAIRY, finally isolated several local
<h4> Which other teams can we work with? </h4>
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                        strains, which were mailed to us for our strain screening plan.
<p>  
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                    </p>
You can work with any other team in the competition, including software, hardware, high school and other tracks. You can also work with non-iGEM research groups, but they do not count towards the iGEM team collaboration silver medal criterion.
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                    <p><img style="width: 50%; margin-top: 1em" src="https://static.igem.org/mediawiki/2018/f/f5/T--H14Z1_Hangzhou--hp_collaborations.png"></p>
</p>
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                    <p style="text-decoration:none; text-align:center; font-size:12px; font-weight:bold"><a href="https://2018.igem.org/Team:SZU-China/Collaborations">Collaborations with SZU-China</a></p>
 
+
                    <h3 class="content_subtitle">Collaborations with XMU-china team</h3>
<p>
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                    <p class="content_context" style="text-indent:2em; text-align:justify">
In order to meet the silver medal criteria on helping another team, you must complete this page and detail the nature of your collaboration with another iGEM team.
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                        In the present project, since the oral table administration of GSH and SAM have some
</p>
+
                        disadvantages, such as low stability and short life span, here we tried to develop a novel
 
+
                        in-vivo strategy of produce and deliver them simultaneously by using NICE system. In the
</div>
+
                        experiment, two-functional GSH synthetase gene (gshF) and SAM synthetase gene (metK) were in
 
+
                        tandem inserted into the expression vector (pNZ8148), and the resulted plasmid (pNZ8148-SG) was
 
+
                        employed to construct the target vector pNZ8148-SGC by introducing adhesion factor gene (cwaA).
 
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                        This target vector was transformed to get recombinant Lactococcus lacti, which was employed to
<div class="column third_size">
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                        produce our “smart yogurt”.
<p>
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                    </p>
Here are some suggestions for projects you could work on with other teams:
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                    <h3 class="content_subtitle">
</p>
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                        The project is outlined with two stages:
 
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                    </h3>
<ul>
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                    <h6 class="content_sub_subtitle">Demonstrate the function of SC-L7Ae-mRFP1 by H14Z1_Hangzhou</h6>
<li> Improve the function of another team's BioBrick Part or Device</li>
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                    <p class="content_context">
<li> Characterize another team's part </li>
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                        As team XMU-China’s HSFCM data shown, OmpA-ST inside OMVs could be detected. To validate the
<li> Debug a construct </li>
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                        ST/SC conjugation inside OMVs, they linked BBa_K2623022/BBa_K2623024 with BBa_K2623025 (NG5) to
<li> Model or simulate another team's system </li>
+
                        form BBa_K2623028 and BBa_K2623030 respectively. Hence, they need to demonstrate the
<li> Test another team's software</li>
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                        SC-L7Ae-mRFP1 inside E. coli BL21 to validate its presence inside E. coli BL21 and therefore
<li> Help build and test another team's hardware project</li>
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                        OMVs. We measured the RFP intensity versus OD600 value (RFP intensity/OD600) of E. coli
<li> Mentor a high-school team</li>
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                        transfected with NG5 to test the function of NG5.
</ul>
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                    </p>
</div>
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                    <p class="content_context">
 +
                        Experiment procedure is:1) Transform plasmid pSB1C3-NG5 into E.coli BL21(DE3);2) Inoculate 5 ml
 +
                        LB with monocolony from the plate, and grow the cells overnight at 37 ℃,200 rpm;3) Inoculate 50
 +
                        ml of LB with pre-culture in a dilution of 1:100 and grow at 37℃,200rpm, and keep another 50ml
 +
                        LB as negative control;4) Grow the culture until OD600 is 0.6,add 50ul 0.5M IPTG solution, and
 +
                        keep another 50ml LB as negative control;5) Measure the fluorescence and OD600 every 2 hours.
 +
                        Keep another 50ml LB as negative control.
 +
                    </p>
 +
                    <p class="content_context">
 +
                        The data and curve of RFP intensity/OD600 were collected in the following:
 +
                    </p>
 +
                    <p><img style="width: 40%; margin-top: 1em" src="https://static.igem.org/mediawiki/2018/a/a1/T--H14Z1_Hangzhou--hp_collaborations_fig2.png"></p>
 +
                    <p><img style="width: 60%; margin-top: 1em" src="https://static.igem.org/mediawiki/2018/9/93/T--H14Z1_Hangzhou--hp_collaborations_fig4.png"></p>
 +
                    <h6 class="content_sub_subtitle">Demonstrate the function of SC-L7Ae-mRFP1 by H14Z1_Hangzhou</h6>
 +
                    <p class="content_context">
 +
                        XMU-China gave a good demonstrative example for our smart yogurt conception by preparing our
 +
                        special yogurt and determined the cell number and contents of two liver-protective agents. The
 +
                        process and results were described in the following:
 +
                    </p>
 +
                    <p style="font-size:20px; font-weight:bold">1) Yogurt production process</p>
 +
                    <p class="content_context">
 +
                        We provided them the yogurt formula ( raw milk 93%, white granulated sugar 7%) and two strains
 +
                        (L. lactis NZ9000 and L. lactis NZ9000/pGMcA). They did the following steps for the process: 1)
 +
                        Heating raw milk to 55-60 oC, add a quantity of sugar, then stir then for 10 minutes at 3000
 +
                        rpm, finally heat up to 65 oC; 2) keep the culture medium at 65 oC for two-stage homogenization
 +
                        (5/20MPa), then do the sterilization at 90 oC for 5 minutes. Then cool down to 30 oC for the
 +
                        next inoculation; 3) Inoculate the milk-containing medium with suitable amount of L. lactis
 +
                        NZ9000 or L. lactis NZ9000/pGMcA, meanwhile the mixed amino acids were supplemented suitabley.
 +
                        Each fermentation process was maintained for 12 hour at 30 oC, and both of the end pH was
 +
                        around 4.6. Several samples were taken out carefully at some time points.
 +
                    </p>
  
 +
                    <p style="font-size:20px; font-weight:bold">2) Product analysis</p>
 +
                    <p class="content_context">
 +
                        The comparison was made for product quality by using different strains. The results showed that
 +
                        the recombinant strain (NZ9000/pGMcA) had a little lower growth rate with regard the original
 +
                        host, but the function of the combinatory module was fully confirmed by measuring the content
 +
                        of the yogurts. The original host did produce GSH during the whole process, but the recombinant
 +
                        cells raised GSH concentration up to 11.8mg/l, which is quite comparable to the data in our
 +
                        laboratory. They also proved that the original host can produce a small amount of SAM during
 +
                        its growth process, but the introduction of our composite module did improved the SAM
 +
                        biosynthesis greatly. Moreover, high density (1.0 x 109/ml) of the strain NZ9000/pGMcA gave the
 +
                        good potential for their continuous biosynthesis of GSH and SAM in human gastrointestinal
 +
                        tract.
 +
                    </p>
 +
                    <p><img style="width: 80%; margin-top: 1em" src="https://static.igem.org/mediawiki/2018/e/ea/T--H14Z1_Hangzhou--hp_collaborations_fig5.png"></p>
 +
                    <p><img style="width: 50%; margin-top: 1em" src="https://static.igem.org/mediawiki/2018/f/f3/T--H14Z1_Hangzhou--hp_collaborations_fig3.png"></p>
 +
                    <p style="text-decoration:none; text-align:center; font-size:12px; font-weight:bold"><a href="https://2018.igem.org/Team:SZU-China/Collaborations">Collaborations with XMU-china team</a></p>
 +
                </div>
 +
            </div>
 +
            <div class="footer"></div>
 +
        </div>
 +
    </div>
 +
</body>
  
 
</html>
 
</html>

Latest revision as of 03:40, 18 October 2018

<!DOCTYPE html>

Collaborations

Collaborations with SZU-China

This year, we made a collaboration with SZU-China in Shenzhen University. We helped them make some new content of their WeChat-based Mini Program. We gave them detailed feedback after using it, and shared our familiar experience with them about how to promote it to more and more high schools. In return, they did much work to screen several compatible strains, which were used by us to screen the suitable strain to produce our “smart yogurts ” combined with our constructed L. lactis. They went to the supermarket, bought various bands and different conditions of yogurt for them, including Classy·Kiss and CHENGUANG DAIRY, finally isolated several local strains, which were mailed to us for our strain screening plan.

Collaborations with SZU-China

Collaborations with XMU-china team

In the present project, since the oral table administration of GSH and SAM have some disadvantages, such as low stability and short life span, here we tried to develop a novel in-vivo strategy of produce and deliver them simultaneously by using NICE system. In the experiment, two-functional GSH synthetase gene (gshF) and SAM synthetase gene (metK) were in tandem inserted into the expression vector (pNZ8148), and the resulted plasmid (pNZ8148-SG) was employed to construct the target vector pNZ8148-SGC by introducing adhesion factor gene (cwaA). This target vector was transformed to get recombinant Lactococcus lacti, which was employed to produce our “smart yogurt”.

The project is outlined with two stages:

Demonstrate the function of SC-L7Ae-mRFP1 by H14Z1_Hangzhou

As team XMU-China’s HSFCM data shown, OmpA-ST inside OMVs could be detected. To validate the ST/SC conjugation inside OMVs, they linked BBa_K2623022/BBa_K2623024 with BBa_K2623025 (NG5) to form BBa_K2623028 and BBa_K2623030 respectively. Hence, they need to demonstrate the SC-L7Ae-mRFP1 inside E. coli BL21 to validate its presence inside E. coli BL21 and therefore OMVs. We measured the RFP intensity versus OD600 value (RFP intensity/OD600) of E. coli transfected with NG5 to test the function of NG5.

Experiment procedure is:1) Transform plasmid pSB1C3-NG5 into E.coli BL21(DE3);2) Inoculate 5 ml LB with monocolony from the plate, and grow the cells overnight at 37 ℃,200 rpm;3) Inoculate 50 ml of LB with pre-culture in a dilution of 1:100 and grow at 37℃,200rpm, and keep another 50ml LB as negative control;4) Grow the culture until OD600 is 0.6,add 50ul 0.5M IPTG solution, and keep another 50ml LB as negative control;5) Measure the fluorescence and OD600 every 2 hours. Keep another 50ml LB as negative control.

The data and curve of RFP intensity/OD600 were collected in the following:

Demonstrate the function of SC-L7Ae-mRFP1 by H14Z1_Hangzhou

XMU-China gave a good demonstrative example for our smart yogurt conception by preparing our special yogurt and determined the cell number and contents of two liver-protective agents. The process and results were described in the following:

1) Yogurt production process

We provided them the yogurt formula ( raw milk 93%, white granulated sugar 7%) and two strains (L. lactis NZ9000 and L. lactis NZ9000/pGMcA). They did the following steps for the process: 1) Heating raw milk to 55-60 oC, add a quantity of sugar, then stir then for 10 minutes at 3000 rpm, finally heat up to 65 oC; 2) keep the culture medium at 65 oC for two-stage homogenization (5/20MPa), then do the sterilization at 90 oC for 5 minutes. Then cool down to 30 oC for the next inoculation; 3) Inoculate the milk-containing medium with suitable amount of L. lactis NZ9000 or L. lactis NZ9000/pGMcA, meanwhile the mixed amino acids were supplemented suitabley. Each fermentation process was maintained for 12 hour at 30 oC, and both of the end pH was around 4.6. Several samples were taken out carefully at some time points.

2) Product analysis

The comparison was made for product quality by using different strains. The results showed that the recombinant strain (NZ9000/pGMcA) had a little lower growth rate with regard the original host, but the function of the combinatory module was fully confirmed by measuring the content of the yogurts. The original host did produce GSH during the whole process, but the recombinant cells raised GSH concentration up to 11.8mg/l, which is quite comparable to the data in our laboratory. They also proved that the original host can produce a small amount of SAM during its growth process, but the introduction of our composite module did improved the SAM biosynthesis greatly. Moreover, high density (1.0 x 109/ml) of the strain NZ9000/pGMcA gave the good potential for their continuous biosynthesis of GSH and SAM in human gastrointestinal tract.

Collaborations with XMU-china team