Difference between revisions of "Team:NUS Singapore-A/Attributions"

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<h1 id='Overview'>ATTRIBUTIONS</h1>
 +
<br>
 +
<div class="quote">If you want to go fast, go alone. If you want to go far, go <b>together</b>.</div>
 +
<br>
 +
<p>
 +
The sheer amount that our project has developed since its inception is extraordinary.
 +
The amazing work here at NUSGEM definitely would definitely not have been possible without the invaluable guidance and unfailing kindness of those who have helped us, in one way or another. In this spirit, credit must be given where it is due, and we would like to express our utmost gratitude to the following people and organizations who saw the value in our humble project,
 +
and selflessly offered their expertise for the betterment our project.
 +
</p>
 +
<p>
 +
We would like to wholeheartedly thank <b>Associate Professor POH Chueh Loo</b> and <b>Assistant Professor Jimmy Chih-Hsien PENG</b>, our greatest cheerleaders.
 +
Both of these Professors toiled tirelessly for our project since its conception, and provided the team constant direction and well-meaning motivation every step of the way.
 +
</p>
  
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
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<!-------------------------------------------------------------------------------------------------------------------------------->
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<!--Part 1------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 1: IDEA GENERATION</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
The team brainstormed project ideas from February to late May.
 +
During this period, the team received constructive and detailed feedback on all of our preliminary project ideas from <b>Professor Richard KITNEY</b> from Imperial College London
 +
- he was a great critic, and imparted the wisdom gleaned from his many years of iGEM involvement to us.
 +
<b>Professor Paul FREEMONT</b>, also from Imperial College London, was instrumental in opening our eyes to the fashion industry that was fraught with issues, and provided us with much-needed inspiration to pursue a problem within the fashion industry.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
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<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!--Part 2------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 2: WET LAB</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
Lab work began in late May.
 +
We were fortunate to have a team of treasured advisors and instructors who patiently guided us in our experiments
 +
- <b>Dr. LIM Yan Ping</b>, <b>Mr. ZHANG Jingyun</b>, and <b>Dr. Saravanan Prabhu NADARAJAN</b>, who taught us the fundamental laboratory techniques necessary for our experiments, gave us a primer on interpreting laboratory data,                                                                                                                                                                                                                                                                                                                                                                          showed us the ropes of primer design, and taught us the importance of sequencing analysis to check for successful cloning.
 +
In addition, <b>Mr. ZHANG Jingyun</b> helped us design all the constructs and primers on our side, and <b>Dr. LIM Yan Ping</b>.
 +
</p>
 +
<p>
 +
We would also like to thank <b>Dr. FOO Jee Loon</b> from the National University of Singapore, who provided invaluable insights on the more technical aspects of our project.
 +
For further details on how Dr Foo’s suggestions have shaped our project, please refer to our Human Practices page.
 +
</p>
 +
<p>
 +
<b>Mr. Clarence TAN Kang Lek</b> loaned and set up his DSLR to help us create a time lapse of our biomanufacturing of luteolin in a bioreactor.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
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 +
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 +
<!--Part 3------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 3: HUMAN PRACTICES</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
Please check out our Human Practices page for a list of our interviewees.
 +
They helped us better understand how to tackle the problems we faced, and provided a refreshing  and holistic perspective on our project.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!--Part 4------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 4: HARDWARE</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
<b>Miss TAN Annie</b> and <b>Mr. YIP Chi Ho, Justin</b> helped us with the procurement of equipment for assembly of our hardware, for example helping us purchase bearings for use in our peristaltic pump. They also helped process our Item Request Lists so our purchases could be reimbursed.
 +
While we did not actualize the ideas generated by <b>Mr. Brian Shohei TEO</b> during our discussion on how to refine the design of Light Wait, we still learned much about good design practice and unconventional thinking, and did our best to practice these principles in later designs.
 +
He reviewed our Hardware page, along with <b>Mr. Eugene EE</b>.
 +
<b>Mr. Anuwar bin SHUKOR</b> and <b>Mr. TAY Peng Yeow</b> supervised us and ensured our safety in our use of the 3D printer and laser cutter.
 +
When it was not possible to use the school’s facilities, <b>Mr SAJJAD Ali</b> helped us 3D print our designs using his personal 3D printer.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!--Part 5------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 5: MODELLING</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
We would like to thank <b>Dr. YEOH Jing Wui</b> for imparting to us the principles of mathematical modelling which helped us analyse the relevant biochemical pathways, introducing to us the concepts of optimisation,
 +
and perhaps most importantly, being approachable and allowing our team to consult her throughout the course of our project. She gave us useful and practicable advice
 +
- for example, when we were not able to get good fits based on our model, she told us to take into consideration the time for RFP maturation.
 +
</p>
 +
<p>
 +
We would also like to thank <b>Dr. Maurice LING</b> from AdvanceSyn, who helped us perform sensitivity analysis using the AdvanceSyn Toolkit, a suite of open-sourced tools for model development and model analysis;
 +
with an emphasis on systems biology, synthetic biology, and metabolic engineering.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!--Part 6------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 6: COLLABORATIONS</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
Collaborations have undeniably opened up more possibilities for our project.
 +
This year, we are very grateful to build meaningful collaborations with 4 teams:
 +
<a href="https://2018.igem.org/Team:Hong_Kong-CUHK">Team CUHK 2018</a>,
 +
<a href="https://2018.igem.org/Team:NTU-Singapore">Team NTU 2018</a>,
 +
<a href="https://2018.igem.org/Team:Toulouse-INSA-UPS">Team Toulouse-INSA-UPS 2018</a>, and
 +
<a href="https://2018.igem.org/Team:ULaval">Team ULaval 2018</a>.
 +
</p>
 +
<p>
 +
At the start, our team wanted to work with aptamers. Unfortunately, we have been unsuccessful in our constructions.
 +
The wet-lab team from CUHK helped us to redesign our constructs involving aptamers,
 +
as well as the primers for these constructions, which led to eventual successful constructions.
 +
</p>
 +
<p>
 +
We would like to sincerely thank Team NTU for helping us to characterise our new biobrick parts:
 +
<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2819000">BBa_K2819000</a> and
 +
<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2819206">BBa_K2819206</a>.
 +
Their expertise in real-time polymerase chain reaction (qPCR) was extremely useful in helping our team generate quality characterisation data for our biobrick systems.
 +
</p>
 +
<p>
 +
Team Toulouse and Team ULaval helped us develop a comprehensive coverage in our education and engagement activities.
 +
The three teams worked closely together to produce a handy and engaging booklet which comprehensively summarises the pertinent issues surrounding synthetic biology
 +
- Team Toulouse authored a section on ethical concerns in synthetic biology, Team ULaval authored another section on the cultural and social aspects of synthetic biology.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!--Part 7------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 7: EDUCATION AND PUBLIC ENGAGEMENT</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
Our education and public engagement events would not have been possible if not for the support of the NUS Biomedical Engineering Club, NUS Tembusu College, and NUS Ridge View Residential College; they provided us with an invaluable platform for us to anchor our education and engagement events.
 +
We would like to thank the researchers who have taken time off from their busy schedules to speak at our events,
 +
and the staff of the pre-university institutions in Singapore for being so forthcoming in sharing details of our events with their students.
 +
</p>
 +
<p>
 +
In particular, we would like to thank <b>Assistant Professor Raye Yeow</b>, the advisor to the NUS Biomedical Engineering Club,
 +
as well as the chairperson of the Biomedical Engineering Society Student Chapter (BES-SC), for his support and endorsement of our educational event,
 +
Life Hacks! 2018, and for kindly helping us to disseminate the details of our event to the wide network of student groups associated with BES-SC.
 +
We are equally grateful to the researchers <b>Dr. Sonja Luz</b>, who shared with us exciting developments intersecting synthetic biology and environmental conservation,
 +
<b>Dr. Owen Schaefer</b>, who made us think deeply about the ethical and legal issues surrounding synthetic biology as a field,
 +
and <b>Associate Professor Lisa Ng</b>,
 +
who shared with us humbling experiences of her work as a female researcher in synthetic biology.
 +
All of these thoughtful speakers, and leaders in the field, have taken time off their busy schedules to grace our events.
 +
With their immense expertise and wealth of knowledge, we were able to educate our participants holistically.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!--Part 8------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 8: PRESENTATION</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
We would like to thank the following people who attended our rehearsals, and gave us constructive and actionable feedback
 +
- <b>Professor CHUA Kee Chiang</b>, <b>Associate Professor LOH Ai Poh</b>, <b>Professor James GOH</b>,
 +
<b>Mr. David BOO KOH Hua Jie</b>, <b>Mr. Jackie TAN Yen</b>, and <b>Mr. Brian Shohei TEO</b>.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!-------------------------------------------------------------------------------------------------------------------------------->
 +
<!--Part 9------------------------------------------------------------------------------------------------------------------------>
 +
<button class="accordion">PART 9: SPONSORS</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
Last but not least, we would like to thank our sponsors who have very generously showed their support for our team this year.
 +
To find out more about their organisations, click here.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<br>
 +
<hr>
 +
<br>
 +
<h1>Acknowledgements</h1>
 +
<br>
 +
<button class="accordion">PART 10: iGEM MATTERS</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
We would like to thank Mr. CHEE Wai Kit David, Mr. Wilbert Biao-Hui TAN, Ms. DONG Thi Anh
 +
Khue, and Mr. Zixu Shawn TIAN for sharing with us their invaluable experience gleaned from
 +
participating in iGEM 2017, and teaching us how to navigate through the administrative
 +
requirements and financial matters.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<button class="accordion">PART 11: WET LAB</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
We would like to acknowledge Dr. LING Hua for providing us with E. coli strains: BL21 Star (DE3)
 +
and BW25141.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<button class="accordion">PART 12: HARDWARE</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
Our hardware fabrication would not be possible had it not been for the generous support of the
 +
Engineering Design and Innovation Centre’s Electronics Workshop, the Engineering Fabrication
 +
Laboratory, and the MedTech Product Realisation Studio. Thank you for allowing us free use of
 +
the fabrication and electronics equipment such as the 3D printers, laser cutter, and soldering
 +
irons.
 +
</p>
 +
<br>
 +
<p>
 +
Mr. MUHAMMED Abdurrahiem bin Abdul lent us 10 Arduino Unos so that we could commence
 +
our work immediately, instead of simply waiting idly for our own orders to arrive.
 +
Miss TAN Annie gave us food for body and soul, while Mr. YIP Chi Ho, Justin supplied us with
 +
his personal brand of sardonic humour and acrylic glue in equal measure. Additionally, we
 +
inherited a set of legendary ball bearings from Mr. Brian Shohei TEO, These 4 ancient (much like
 +
their original owner) bearings were salvaged from the flying machine he created as part of his
 +
undergraduate dissertation, the Phoenix. Both this set of ball bearings and his oft macabre,
 +
perpetually facetious jokes helped motivate our hardware team greatly. But most importantly,
 +
all of these people were kind.
 +
</p>
 +
<br>
 +
<p>
 +
Mr. SAJJAD Ali introduced us to Russian culture, provided intellectual stimulation, and also lent
 +
us acrylic glue. If you’re noticing a theme here, it’s because our life was in pieces and
 +
unfortunately we needed acrylic glue in industrial quantities. Not to drink and thus end our
 +
misery, but to make our cuvettes watertight. This was accomplished once Mr Jonathan
 +
AMBROSE lent us his Acrifix cement, for which we are eternally grateful. The hardware team has
 +
no comment on whether we still need to pull ourselves together.
 +
</p>
 +
<br>
 +
</div></div>
 +
 +
<button class="accordion">PART 13: MISCELLANEOUS</button>
 +
<div class="panel" style="background-color: rgba(255,255,255,0.6);">
 +
<div class="panel-inside">
 +
<p>
 +
We thank Mr. TAN Kang Lek, Clarence for generously lending us his prized Pentax K-1 Mark II
 +
and tripod, often on very short notice.
 +
</p>
 +
<br>
 +
</div></div>
 +
<br>
 +
 +
<p>We would like the sincerely apologize if we have inadvertently missed anyone out.</p>
 +
<br>
 +
 +
</div>
 +
 +
</div></div>
 +
 +
 +
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 +
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{{:Team:NUS_Singapore-A/Templates/Footer}}
 
{{:Team:NUS_Singapore-A/Templates/Footer}}

Revision as of 17:24, 15 October 2018

CONNECT WITH US

ATTRIBUTIONS


If you want to go fast, go alone. If you want to go far, go together.

The sheer amount that our project has developed since its inception is extraordinary. The amazing work here at NUSGEM definitely would definitely not have been possible without the invaluable guidance and unfailing kindness of those who have helped us, in one way or another. In this spirit, credit must be given where it is due, and we would like to express our utmost gratitude to the following people and organizations who saw the value in our humble project, and selflessly offered their expertise for the betterment our project.

We would like to wholeheartedly thank Associate Professor POH Chueh Loo and Assistant Professor Jimmy Chih-Hsien PENG, our greatest cheerleaders. Both of these Professors toiled tirelessly for our project since its conception, and provided the team constant direction and well-meaning motivation every step of the way.

The team brainstormed project ideas from February to late May. During this period, the team received constructive and detailed feedback on all of our preliminary project ideas from Professor Richard KITNEY from Imperial College London - he was a great critic, and imparted the wisdom gleaned from his many years of iGEM involvement to us. Professor Paul FREEMONT, also from Imperial College London, was instrumental in opening our eyes to the fashion industry that was fraught with issues, and provided us with much-needed inspiration to pursue a problem within the fashion industry.


Lab work began in late May. We were fortunate to have a team of treasured advisors and instructors who patiently guided us in our experiments - Dr. LIM Yan Ping, Mr. ZHANG Jingyun, and Dr. Saravanan Prabhu NADARAJAN, who taught us the fundamental laboratory techniques necessary for our experiments, gave us a primer on interpreting laboratory data, showed us the ropes of primer design, and taught us the importance of sequencing analysis to check for successful cloning. In addition, Mr. ZHANG Jingyun helped us design all the constructs and primers on our side, and Dr. LIM Yan Ping.

We would also like to thank Dr. FOO Jee Loon from the National University of Singapore, who provided invaluable insights on the more technical aspects of our project. For further details on how Dr Foo’s suggestions have shaped our project, please refer to our Human Practices page.

Mr. Clarence TAN Kang Lek loaned and set up his DSLR to help us create a time lapse of our biomanufacturing of luteolin in a bioreactor.


Please check out our Human Practices page for a list of our interviewees. They helped us better understand how to tackle the problems we faced, and provided a refreshing and holistic perspective on our project.


Miss TAN Annie and Mr. YIP Chi Ho, Justin helped us with the procurement of equipment for assembly of our hardware, for example helping us purchase bearings for use in our peristaltic pump. They also helped process our Item Request Lists so our purchases could be reimbursed. While we did not actualize the ideas generated by Mr. Brian Shohei TEO during our discussion on how to refine the design of Light Wait, we still learned much about good design practice and unconventional thinking, and did our best to practice these principles in later designs. He reviewed our Hardware page, along with Mr. Eugene EE. Mr. Anuwar bin SHUKOR and Mr. TAY Peng Yeow supervised us and ensured our safety in our use of the 3D printer and laser cutter. When it was not possible to use the school’s facilities, Mr SAJJAD Ali helped us 3D print our designs using his personal 3D printer.


We would like to thank Dr. YEOH Jing Wui for imparting to us the principles of mathematical modelling which helped us analyse the relevant biochemical pathways, introducing to us the concepts of optimisation, and perhaps most importantly, being approachable and allowing our team to consult her throughout the course of our project. She gave us useful and practicable advice - for example, when we were not able to get good fits based on our model, she told us to take into consideration the time for RFP maturation.

We would also like to thank Dr. Maurice LING from AdvanceSyn, who helped us perform sensitivity analysis using the AdvanceSyn Toolkit, a suite of open-sourced tools for model development and model analysis; with an emphasis on systems biology, synthetic biology, and metabolic engineering.


Collaborations have undeniably opened up more possibilities for our project. This year, we are very grateful to build meaningful collaborations with 4 teams: Team CUHK 2018, Team NTU 2018, Team Toulouse-INSA-UPS 2018, and Team ULaval 2018.

At the start, our team wanted to work with aptamers. Unfortunately, we have been unsuccessful in our constructions. The wet-lab team from CUHK helped us to redesign our constructs involving aptamers, as well as the primers for these constructions, which led to eventual successful constructions.

We would like to sincerely thank Team NTU for helping us to characterise our new biobrick parts: BBa_K2819000 and BBa_K2819206. Their expertise in real-time polymerase chain reaction (qPCR) was extremely useful in helping our team generate quality characterisation data for our biobrick systems.

Team Toulouse and Team ULaval helped us develop a comprehensive coverage in our education and engagement activities. The three teams worked closely together to produce a handy and engaging booklet which comprehensively summarises the pertinent issues surrounding synthetic biology - Team Toulouse authored a section on ethical concerns in synthetic biology, Team ULaval authored another section on the cultural and social aspects of synthetic biology.


Our education and public engagement events would not have been possible if not for the support of the NUS Biomedical Engineering Club, NUS Tembusu College, and NUS Ridge View Residential College; they provided us with an invaluable platform for us to anchor our education and engagement events. We would like to thank the researchers who have taken time off from their busy schedules to speak at our events, and the staff of the pre-university institutions in Singapore for being so forthcoming in sharing details of our events with their students.

In particular, we would like to thank Assistant Professor Raye Yeow, the advisor to the NUS Biomedical Engineering Club, as well as the chairperson of the Biomedical Engineering Society Student Chapter (BES-SC), for his support and endorsement of our educational event, Life Hacks! 2018, and for kindly helping us to disseminate the details of our event to the wide network of student groups associated with BES-SC. We are equally grateful to the researchers Dr. Sonja Luz, who shared with us exciting developments intersecting synthetic biology and environmental conservation, Dr. Owen Schaefer, who made us think deeply about the ethical and legal issues surrounding synthetic biology as a field, and Associate Professor Lisa Ng, who shared with us humbling experiences of her work as a female researcher in synthetic biology. All of these thoughtful speakers, and leaders in the field, have taken time off their busy schedules to grace our events. With their immense expertise and wealth of knowledge, we were able to educate our participants holistically.


We would like to thank the following people who attended our rehearsals, and gave us constructive and actionable feedback - Professor CHUA Kee Chiang, Associate Professor LOH Ai Poh, Professor James GOH, Mr. David BOO KOH Hua Jie, Mr. Jackie TAN Yen, and Mr. Brian Shohei TEO.


Last but not least, we would like to thank our sponsors who have very generously showed their support for our team this year. To find out more about their organisations, click here.





Acknowledgements


We would like to thank Mr. CHEE Wai Kit David, Mr. Wilbert Biao-Hui TAN, Ms. DONG Thi Anh Khue, and Mr. Zixu Shawn TIAN for sharing with us their invaluable experience gleaned from participating in iGEM 2017, and teaching us how to navigate through the administrative requirements and financial matters.


We would like to acknowledge Dr. LING Hua for providing us with E. coli strains: BL21 Star (DE3) and BW25141.


Our hardware fabrication would not be possible had it not been for the generous support of the Engineering Design and Innovation Centre’s Electronics Workshop, the Engineering Fabrication Laboratory, and the MedTech Product Realisation Studio. Thank you for allowing us free use of the fabrication and electronics equipment such as the 3D printers, laser cutter, and soldering irons.


Mr. MUHAMMED Abdurrahiem bin Abdul lent us 10 Arduino Unos so that we could commence our work immediately, instead of simply waiting idly for our own orders to arrive. Miss TAN Annie gave us food for body and soul, while Mr. YIP Chi Ho, Justin supplied us with his personal brand of sardonic humour and acrylic glue in equal measure. Additionally, we inherited a set of legendary ball bearings from Mr. Brian Shohei TEO, These 4 ancient (much like their original owner) bearings were salvaged from the flying machine he created as part of his undergraduate dissertation, the Phoenix. Both this set of ball bearings and his oft macabre, perpetually facetious jokes helped motivate our hardware team greatly. But most importantly, all of these people were kind.


Mr. SAJJAD Ali introduced us to Russian culture, provided intellectual stimulation, and also lent us acrylic glue. If you’re noticing a theme here, it’s because our life was in pieces and unfortunately we needed acrylic glue in industrial quantities. Not to drink and thus end our misery, but to make our cuvettes watertight. This was accomplished once Mr Jonathan AMBROSE lent us his Acrifix cement, for which we are eternally grateful. The hardware team has no comment on whether we still need to pull ourselves together.


We thank Mr. TAN Kang Lek, Clarence for generously lending us his prized Pentax K-1 Mark II and tripod, often on very short notice.



We would like the sincerely apologize if we have inadvertently missed anyone out.