Difference between revisions of "Template:SYSU-Software/statics/html/Projects/Validation.html"

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    <div class="header2"> Wet-lab Validation</div>
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    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/f/fb/T--SYSU-Software--wet-valid-1.png">
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    <div class="caption">Figure 1: This is our circuit design in CO-RAD
 +
    </div>
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    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/3/3e/T--SYSU-Software--wet-valid-2.png">
 +
    <div class="caption">Figure 2: This is our protocol design in CO-RAD</div>
 +
    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/1/10/T--SYSU-Software--wet-3.png">
 +
    <div class="caption">Figure 3: This is our gel electrophoresis result. There is plenty of mismatching product and
 +
        no target bands in our result
 +
    </div>
 +
    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/a/a9/T--SYSU-Software--wet-4.png">
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    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/d/db/T--SYSU-Software--wet-5.png">
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    <div class="caption">Figure 4: Circuit and protocol design from our adviser</div>
 +
    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/9/9c/T--SYSU-Software--wet-6.png">
 +
    <div class="caption">Figure 5: This is our version control. The differences between each version are clear</div>
 +
    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/c/c3/T--SYSU-Software--wet-7.png">
 +
    <div class="caption">Figure 6: We can see there are our target bands and plenty of mismatching product</div>
 +
    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/a/a5/T--SYSU-Software--wet-8.png">
 +
    <div class="caption">Figure 7: This is our final result. We can see our target bands are clearer than before</div>
 +
    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/d/d3/T--SYSU-Software--wet-9.png">
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    <div class="caption"></div>
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    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/b/bf/T--SYSU-Software--wet-10.png">
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    <div class="caption"></div>
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    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/d/d7/T--SYSU-Software--wet-11.png">
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    <div class="caption"></div>
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    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/7/7c/T--SYSU-Software--wet-12.png">
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    <div class="caption"></div>
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    <img class="wet-valid" src="https://static.igem.org/mediawiki/2018/d/d1/T--SYSU-Software--wet-13.png">
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    <div class="caption"></div>
 
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Revision as of 16:54, 17 October 2018

Project
Validation
Installability
To set up your own server, please follow the installation guide below:
Dependency
       To run CO-RAD, you should get prepared on your server as follow:
  1. Make sure your server has over 8GB memory available, while 16GB is recommended. This is crucial for our search system.
  2. Python>= 3.6, with main following packages installed:
    • Django >= 2.0
    • pySBOL == 2.3.0.
    • tensorflow == 1.11.0
                   Numpy, xlrd, pandas, sklearn Details for these packages are listed below.
  3. Supportive data. Click <a href="https://github.com/xwy27/Designer#">here</a> to download, and save it at some path.
Installation
  • Repo Clone. Clone the repository from github. With git installed, you can simply type git clone <a href="https://github.com/igemsoftware2018/SYSU-Software-2018">https://github.com/igemsoftware2018/SYSU-Software-2018</a> in your terminal. Or you can visit our repository and download the source file, unzip it and copy it to your custom directory.
  • Installation. The main installation process is packed into scripts. Run setup.sh (setup.bat for Windows) for installation. It may take several minutes to load ocean of data to the database. After finishing, simply run runserver.sh(runserver.bat on windows) to let CO-RAD get started to run! 
       Mac OS Mojave

       Enviroment

       <img src="T--SYSU-Software--macos_config.png" />
MacBook Pro(13-inch, 2018, Four Thunderbolt 3 Ports) with maxOS Mojave (Version 10.14), 
           2.3GHz Intel Core i5 and 16GB 2133 MHz LPDDR3.



       Result

       <img src="T--SYSU-Software--macos_run.png" />

           Successfully installed.

       Windows 10 Enterprise Edition

       Enviroment

       <img src="T--SYSU-Software--win_config.png" />
Windows 10 Enterprise edition with 8GB RAM and Intel(R) Core(TM) i7-7700K CPU @ 4.20GHz, 64-bit operating system
       Result

       <img src="T--SYSU-Software--win_run.png" />
Successfully installed.
       Linux Arch Distribution

       Environment

       <img src="T--SYSU-Software--arch_config.png" />
Linux Arch Distribution with 4 GB RAM and Intel(R) Core(TM)2 Duo CPU T660 @ 2.20GHz. 
       Result

       <img src="T--SYSU-Software--arch_run.png" />
Successfully installed.
Wet-lab Validation
   <img class="wet-valid" src="T--SYSU-Software--wet-valid-1.png">
Figure 1: This is our circuit design in CO-RAD 
   <img class="wet-valid" src="T--SYSU-Software--wet-valid-2.png">
Figure 2: This is our protocol design in CO-RAD
   <img class="wet-valid" src="T--SYSU-Software--wet-3.png">
Figure 3: This is our gel electrophoresis result. There is plenty of mismatching product and 
       no target bands in our result

   <img class="wet-valid" src="T--SYSU-Software--wet-4.png">
   <img class="wet-valid" src="T--SYSU-Software--wet-5.png">
Figure 4: Circuit and protocol design from our adviser
   <img class="wet-valid" src="T--SYSU-Software--wet-6.png">
Figure 5: This is our version control. The differences between each version are clear
   <img class="wet-valid" src="T--SYSU-Software--wet-7.png">
Figure 6: We can see there are our target bands and plenty of mismatching product
   <img class="wet-valid" src="T--SYSU-Software--wet-8.png">
Figure 7: This is our final result. We can see our target bands are clearer than before
   <img class="wet-valid" src="T--SYSU-Software--wet-9.png">

   <img class="wet-valid" src="T--SYSU-Software--wet-10.png">

   <img class="wet-valid" src="T--SYSU-Software--wet-11.png">

   <img class="wet-valid" src="T--SYSU-Software--wet-12.png">

   <img class="wet-valid" src="T--SYSU-Software--wet-13.png">