Difference between revisions of "Team:Vilnius-Lithuania/Design"

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                  <strong>Fig. 1</strong> NMR structure of Mistic (MstX). Protein is comprised of four ɑ-helices with a polar lipid-facing surface. Topology measurements have shown that both C-terminus and N-terminus of MstX are exposed at the same side. Adapted by Yarnell, 2005
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                            <img src="https://static.igem.org/mediawiki/2018/d/d1/T--Vilnius-Lithuania--Fig1_Mistic.png"/>
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                            <p><strong>Fig. 1 </strong> NMR structure of Mistic (MstX). Protein is comprised of four ɑ-helices with a polar lipid-facing surface. Topology measurements have shown that both C-terminus and N-terminus of MstX are exposed at the same side. Adapted by Yarnell, 2005</p>
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                   MstX was identified back in 2005 by Rooslid and colleagues. Interestingly, until this day little is known about how MstX promotes integral protein targeting to the membrane<sup>3</sup>. Recently it has found a novel application as a fusion tag supporting the recombinant production and bilayer insertion of other membrane proteins (MPs)<sup>1</sup>. MstX, when fused to the N-terminus of integral MPs, enables the cargo proteins to fold into their native conformations in the membrane, thus yielding high-level expression. It is known that MstX autonomously targets proteins to the membrane bypassing the canonical secretory apparatus, like Sec translocon. In addition to this, it was indirectly presumed that MstX lacks any recognizable signal sequence <sup>2</sup>.  
 
                   MstX was identified back in 2005 by Rooslid and colleagues. Interestingly, until this day little is known about how MstX promotes integral protein targeting to the membrane<sup>3</sup>. Recently it has found a novel application as a fusion tag supporting the recombinant production and bilayer insertion of other membrane proteins (MPs)<sup>1</sup>. MstX, when fused to the N-terminus of integral MPs, enables the cargo proteins to fold into their native conformations in the membrane, thus yielding high-level expression. It is known that MstX autonomously targets proteins to the membrane bypassing the canonical secretory apparatus, like Sec translocon. In addition to this, it was indirectly presumed that MstX lacks any recognizable signal sequence <sup>2</sup>.  
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                  <strong>Fig. 2</strong> OmpA-X and MstX-OmpA-X (X - additional part of the construct; shown with arrows) expression in <var>E. coli</var>; SDS-PAGE after induction with IPTG for 2 hours and 4 hours; K - control, M - protein ladder  
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                            <img src="https://static.igem.org/mediawiki/2018/f/fa/T--Vilnius-Lithuania--Fig2_Mistic.png"/>
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                            <p><strong>Fig. 2 </strong> OmpA-X and MstX-OmpA-X (X - additional part of the construct; shown with arrows) expression in <var>E. coli</var>; SDS-PAGE after induction with IPTG for 2 hours and 4 hours; K - control, M - protein ladder </p>
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                   Also, we checked if we could fuse MstX with other integral membrane proteins. In this case, IgA protein (Fig. 3).  
 
                   Also, we checked if we could fuse MstX with other integral membrane proteins. In this case, IgA protein (Fig. 3).  
 
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                  <strong>Fig. 3</strong> IgA, IgA-MstX, and X-IgA-MstX (X - additional part of the construct; shown with arrows) expression in <var>E. coli</var>; SDS-PAGE; U4-2 - samples affected with 8M urea, S2-4 - samples affected with protein denaturation dye, K - control, M - protein ladder
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                                    <img src="https://static.igem.org/mediawiki/2018/3/31/T--Vilnius-Lithuania--Fig3_Mistic.png"/>
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                                    <p><strong>Fig. 3 </strong> IgA, IgA-MstX, and X-IgA-MstX (X - additional part of the construct; shown with arrows) expression in <var>E. coli</var>; SDS-PAGE; U4-2 - samples affected with 8M urea, S2-4 - samples affected with protein denaturation dye, K - control, M - protein ladder </p>
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                  <strong>Fig. 4</strong> Single-chain variable fragment (scFv) expression in IVTT system; SDS-PAGE. M - protein ladder, + - positive control DHFR, 1 - scFv, 2 - MstX-scFv, - negative control (without template DNA)
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                            <img src="https://static.igem.org/mediawiki/2018/7/79/T--Vilnius-Lithuania--Fig4_Mistic.png"/>
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                            <p><strong>Fig. 4 </strong> Single-chain variable fragment (scFv) expression in IVTT system; SDS-PAGE. M - protein ladder, + - positive control DHFR, 1 - scFv, 2 - MstX-scFv, - negative control (without template DNA)</p>
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                   Analyzing the reaction samples, sediments in scFv were observed, which meant that scFv aggregated. However, in MstX-scFv sample there were no sediments. By analysing electrophoresis results (Fig. 4) it can be seen that MstX prevented formation of the aggregates which resulted in higher scFv expression yield.
 
                   Analyzing the reaction samples, sediments in scFv were observed, which meant that scFv aggregated. However, in MstX-scFv sample there were no sediments. By analysing electrophoresis results (Fig. 4) it can be seen that MstX prevented formation of the aggregates which resulted in higher scFv expression yield.

Revision as of 22:18, 17 October 2018

Design and Results

Results

Cell-free, synthetic biology systems open new horizons in engineering biomolecular systems which feature complex, cell-like behaviors in the absence of living entities. Having no superior genetic control, user-controllable mechanisms to regulate gene expression are necessary to successfully operate these systems. We have created a small collection of synthetic RNA thermometers that enable temperature-dependent translation of membrane proteins, work well in cells and display great potential to be transferred to any in vitro protein synthesis system.

invert