Difference between revisions of "Team:Fudan/Notebook"
(LC) |
|||
| Line 5: | Line 5: | ||
We make it compatible on laptop and mobile devices by using Materialize 1.0.0-rc.2. | We make it compatible on laptop and mobile devices by using Materialize 1.0.0-rc.2. | ||
--> | --> | ||
| + | <!-- LC check on 2018-10-18 --> | ||
<head> | <head> | ||
<meta charset="UTF-8"> | <meta charset="UTF-8"> | ||
| − | + | ||
<!-- CSS --> | <!-- CSS --> | ||
<link rel="stylesheet" type="text/css" href="https://2018.igem.org/wiki/index.php?title=Template:Fudan/css.css&action=raw&ctype=text/css" /> | <link rel="stylesheet" type="text/css" href="https://2018.igem.org/wiki/index.php?title=Template:Fudan/css.css&action=raw&ctype=text/css" /> | ||
<!-- Font-awesome icons 4.7.0 --> | <!-- Font-awesome icons 4.7.0 --> | ||
| − | <link href="https://2018.igem.org/wiki/index.php?title=Template:Fudan/font-awesome.css&action=raw&ctype=text/css" rel="stylesheet"> | + | <link href="https://2018.igem.org/wiki/index.php?title=Template:Fudan/font-awesome.css&action=raw&ctype=text/css" rel="stylesheet" /> |
<!-- Materialize 1.0.0-rc.2 (Material Design like) --> | <!-- Materialize 1.0.0-rc.2 (Material Design like) --> | ||
| Line 18: | Line 19: | ||
<!-- Clear default CSS settings; CSS reset --> | <!-- Clear default CSS settings; CSS reset --> | ||
| − | <style | + | <style> |
*{margin: 0;padding: 0;list-style: none;} | *{margin: 0;padding: 0;list-style: none;} | ||
/* via: https://blog.csdn.net/weixin_41014370/article/details/79523637 */ | /* via: https://blog.csdn.net/weixin_41014370/article/details/79523637 */ | ||
| Line 55: | Line 56: | ||
/** 重置表格元素 **/ | /** 重置表格元素 **/ | ||
table { border-collapse: collapse; border-spacing: 0; } | table { border-collapse: collapse; border-spacing: 0; } | ||
| − | + | </style> | |
| + | <title>2018 iGEM Team:Fudan - Notebook</title> | ||
</head> | </head> | ||
| Line 70: | Line 72: | ||
<div class="nav-wrapper"> | <div class="nav-wrapper"> | ||
<div id="teamLogo" class="brand-logo"> | <div id="teamLogo" class="brand-logo"> | ||
| − | <a href="https://2018.igem.org/Team:Fudan" target="_self"><img src="https://static.igem.org/mediawiki/2018/c/c4/T--Fudan--teamLogo.svg"></a> | + | <a href="https://2018.igem.org/Team:Fudan" target="_self"><img alt="2018 team Fudan logo" src="https://static.igem.org/mediawiki/2018/c/c4/T--Fudan--teamLogo.svg"></a> |
</div> | </div> | ||
<ul id="nav-mobile" class="right blueBorder"> | <ul id="nav-mobile" class="right blueBorder"> | ||
| Line 90: | Line 92: | ||
<!-- Dropdown and List elements in navigation bar --> | <!-- Dropdown and List elements in navigation bar --> | ||
<ul id="dropdown1" class="dropdown-content"> | <ul id="dropdown1" class="dropdown-content"> | ||
| − | <li><a href=" | + | <li><a href="./Demonstrate">Demonstration</a></li> |
| − | <li><a href=" | + | <li><a href="./Antigen_Receptors">Antigen, Receptors</a></li> |
| − | <li><a href=" | + | <li><a href="./Results">Transmembrane logic</a></li> |
</ul> | </ul> | ||
<ul id="dropdown2" class="dropdown-content"> | <ul id="dropdown2" class="dropdown-content"> | ||
| − | <li><a href=" | + | <li><a href="./Addon#ribo">Addon: ribo</a></li> |
| − | <li><a href=" | + | <li><a href="./Addon#TALE">Addon: TALE</a></li> |
| − | <li><a href=" | + | <li><a href="./Addon#T2">Addon: T2</a></li> |
| − | <li><a href=" | + | <li><a href="./Model#Transcriptional_Amplifer">Model: transcriptional amplifer</a></li> |
| − | <li><a href=" | + | <li><a href="./Model#NotchLigandKinetics">Model: Notch-ligand kinetics</a></li> |
| − | <li><a href=" | + | <li><a href="./Software">Software</a></li> |
</ul> | </ul> | ||
<ul id="dropdown3" class="dropdown-content"> | <ul id="dropdown3" class="dropdown-content"> | ||
| − | <li><a href=" | + | <li><a href="./InterLab">iGEM interLab</a></li> |
| − | <li><a href=" | + | <li><a href="./Notebook">Our notebook</a></li> |
| − | <li><a href=" | + | <li><a href="./Primers">Primers used</a></li> |
| − | <li><a href=" | + | <li><a href="./Protocols">Protocols</a></li> |
| − | <li><a href=" | + | <li><a href="./Safety">Safety</a></li> |
</ul> | </ul> | ||
<ul id="dropdown4" class="dropdown-content"> | <ul id="dropdown4" class="dropdown-content"> | ||
| − | <li><a href=" | + | <li><a href="./Basic_Parts">Basic parts</a></li> |
| − | <li><a href=" | + | <li><a href="./Composite_Parts">Composite parts</a></li> |
| − | <li><a href=" | + | <li><a href="./Optimization">Optimization</a></li> |
| − | <li><a href=" | + | <li><a href="./Parts_Collection">Parts collection</a></li> |
| − | <li><a href=" | + | <li><a href="./Improve">Parts improvement</a></li> |
| − | <li><a href=" | + | <li><a href="./Measurement">Quantification</a></li> |
</ul> | </ul> | ||
<ul id="dropdown5" class="dropdown-content"> | <ul id="dropdown5" class="dropdown-content"> | ||
| − | <li><a href=" | + | <li><a href="./Bio-Art">Bio-Art display</a></li> |
| − | <li><a href=" | + | <li><a href="./Collaborations">Collaborations</a></li> |
| − | <li><a href=" | + | <li><a href="./Design_Intention">Design intention</a></li> |
| − | <li><a href=" | + | <li><a href="./Human_Practices">Human practices</a></li> |
| − | <li><a href=" | + | <li><a href="./Public_Engagement">Public engagement</a></li> |
</ul> | </ul> | ||
<ul id="dropdown6" class="dropdown-content"> | <ul id="dropdown6" class="dropdown-content"> | ||
| − | <li><a href=" | + | <li><a href="./Acknowledgement">Acknowledgement</a></li> |
| − | <li><a href=" | + | <li><a href="./Attributions">Attributions</a></li> |
| − | <li><a href=" | + | <li><a href="./Heritage">Heritage</a></li> |
| − | <li><a href=" | + | <li><a href="./Team">Members</a></li> |
| − | <li><a href=" | + | <li><a href="./Sponsors">Sponsors</a></li> |
</ul> | </ul> | ||
| Line 147: | Line 149: | ||
<div class="collapsible-body"> | <div class="collapsible-body"> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Demonstrate">Demonstration</a></li> |
| − | <li><a href=" | + | <li><a href="./Antigen_Receptors">Antigen, Receptors</a></li> |
| − | <li><a href=" | + | <li><a href="./Results">Transmembrane logic</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 158: | Line 160: | ||
<div class="collapsible-body"> | <div class="collapsible-body"> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Addon#ribo">Addon: ribo</a></li> |
| − | <li><a href=" | + | <li><a href="./Addon#TALE">Addon: TALE</a></li> |
| − | <li><a href=" | + | <li><a href="./Addon#T2">Addon: T2</a></li> |
| − | <li><a href=" | + | <li><a href="./Model#Transcriptional_Amplifer">Model: transcriptional amplifer</a></li> |
| − | <li><a href=" | + | <li><a href="./Model#NotchLigandKinetics">Model: Notch-ligand kinetics</a></li> |
| − | <li><a href=" | + | <li><a href="./Software">Software</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 171: | Line 173: | ||
<div class="collapsible-body"> | <div class="collapsible-body"> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./InterLab">iGEM interLab</a></li> |
| − | <li><a href=" | + | <li><a href="./Notebook">Our notebook</a></li> |
| − | <li><a href=" | + | <li><a href="./Primers">Primers used</a></li> |
| − | <li><a href=" | + | <li><a href="./Protocols">Protocols</a></li> |
| − | <li><a href=" | + | <li><a href="./Safety">Safety</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 183: | Line 185: | ||
<div class="collapsible-body"> | <div class="collapsible-body"> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Basic_Parts">Basic parts</a></li> |
| − | <li><a href=" | + | <li><a href="./Composite_Parts">Composite parts</a></li> |
| − | <li><a href=" | + | <li><a href="./Optimization">Optimization</a></li> |
| − | <li><a href=" | + | <li><a href="./Parts_Collection">Parts collection</a></li> |
| − | <li><a href=" | + | <li><a href="./Improve">Parts improvement</a></li> |
| − | <li><a href=" | + | <li><a href="./Measurement">Quantification</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 196: | Line 198: | ||
<div class="collapsible-body"> | <div class="collapsible-body"> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Bio-Art">Bio-Art display</a></li> |
| − | <li><a href=" | + | <li><a href="./Collaborations">Collaborations</a></li> |
| − | <li><a href=" | + | <li><a href="./Design_Intention">Design intention</a></li> |
| − | <li><a href=" | + | <li><a href="./Human_Practices">Human practices</a></li> |
| − | <li><a href=" | + | <li><a href="./Public_Engagement">Public engagement</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 208: | Line 210: | ||
<div class="collapsible-body"> | <div class="collapsible-body"> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Acknowledgement">Acknowledgement</a></li> |
| − | <li><a href=" | + | <li><a href="./Attributions">Attributions</a></li> |
| − | <li><a href=" | + | <li><a href="./Heritage">Heritage</a></li> |
| − | <li><a href=" | + | <li><a href="./Team">Members</a></li> |
| − | <li><a href=" | + | <li><a href="./Sponsors">Sponsors</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 268: | Line 270: | ||
<!-- side navigator of page content --> | <!-- side navigator of page content --> | ||
<!--<ul id="pageContentNav" class="hide-on-med-and-down z-depth-0"> | <!--<ul id="pageContentNav" class="hide-on-med-and-down z-depth-0"> | ||
| − | <li><a href=" | + | <li><a href="./InterLab">iGEM interLab</a></li> |
| − | <li><a href=" | + | <li><a href="./Notebook">Our notebook</a></li> |
| − | <li><a href=" | + | <li><a href="./Primers">Primers used</a></li> |
| − | <li><a href=" | + | <li><a href="./Protocols">Protocols</a></li> |
| − | <li><a href=" | + | <li><a href="./Safety">Safety</a></li> |
| − | + | ||
<li class="onThisPageNav"><a href="#section1">General safety concerns</a></li> | <li class="onThisPageNav"><a href="#section1">General safety concerns</a></li> | ||
<li class="onThisPageNav"><a href="#section2">Laboratory practice</a></li> | <li class="onThisPageNav"><a href="#section2">Laboratory practice</a></li> | ||
| Line 308: | Line 310: | ||
</li><li>Finished constructing plasmids used in logic gates</li> | </li><li>Finished constructing plasmids used in logic gates</li> | ||
</ul> | </ul> | ||
| − | <h3> | + | <h3>October</h3> |
<ul> | <ul> | ||
<li>Parts construction | <li>Parts construction | ||
| Line 328: | Line 330: | ||
<!--Abstract on content page--> | <!--Abstract on content page--> | ||
<div id="abstractContent" class="z-depth-2"> | <div id="abstractContent" class="z-depth-2"> | ||
| − | <a href="#!"><img src="https://static.igem.org/mediawiki/2018/9/96/T--Fudan--X.svg"></a> | + | <a href="#!"><img alt="2018 team Fudan abstract" src="https://static.igem.org/mediawiki/2018/9/96/T--Fudan--X.svg"></a> |
<div class="container"> | <div class="container"> | ||
<h2 style="margin: 0;padding: 10px 0;">Abstract</h2> | <h2 style="margin: 0;padding: 10px 0;">Abstract</h2> | ||
| Line 365: | Line 367: | ||
<div class="row"> | <div class="row"> | ||
<div id="sponsor" class="col m3 s12 row"> | <div id="sponsor" class="col m3 s12 row"> | ||
| − | <a href="https://2018.igem.org/Team:Fudan" target="_blank"><img class="col s3 m6 l3" style="position:relative; padding: 0 0.3rem; margin:-0.15rem 0; left: -0.45rem;" src="https://static.igem.org/mediawiki/2018/7/73/T--Fudan--teamLogoWhite.png"> | + | <a href="https://2018.igem.org/Team:Fudan" target="_blank"><img alt="2018 Team:Fudan logo white" class="col s3 m6 l3" style="position:relative; padding: 0 0.3rem; margin:-0.15rem 0; left: -0.45rem;" src="https://static.igem.org/mediawiki/2018/7/73/T--Fudan--teamLogoWhite.png"> |
</a><a href="http://www.fudan.edu.cn/en/" target="_blank"><img class="col s3 m6 l3" alt="Fudan University" src="https://static.igem.org/mediawiki/2018/f/f7/T--Fudan--schoolLogo.png"> | </a><a href="http://www.fudan.edu.cn/en/" target="_blank"><img class="col s3 m6 l3" alt="Fudan University" src="https://static.igem.org/mediawiki/2018/f/f7/T--Fudan--schoolLogo.png"> | ||
</a><a href="http://life.fudan.edu.cn/" target="_blank"><img class="col s3 m6 l3" style="margin-bottom: 4%;/* 该图比其他小一点，排版需要 */" alt="School of Life Sciences, Fudan University" src="https://static.igem.org/mediawiki/2018/1/1d/T--Fudan--schoolOfLifeSciencesIcon.png"> | </a><a href="http://life.fudan.edu.cn/" target="_blank"><img class="col s3 m6 l3" style="margin-bottom: 4%;/* 该图比其他小一点，排版需要 */" alt="School of Life Sciences, Fudan University" src="https://static.igem.org/mediawiki/2018/1/1d/T--Fudan--schoolOfLifeSciencesIcon.png"> | ||
| Line 377: | Line 379: | ||
<span>Project</span> | <span>Project</span> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Demonstrate">Demonstration</a></li> |
| − | <li><a href=" | + | <li><a href="./Antigen_Receptors">Antigen, Receptors</a></li> |
| − | <li><a href=" | + | <li><a href="./Results">Transmembrane logic</a></li> |
<li><a href="https://2017.igem.org/Team:Fudan">2017.iGEM</a></li> | <li><a href="https://2017.igem.org/Team:Fudan">2017.iGEM</a></li> | ||
</ul> | </ul> | ||
| Line 387: | Line 389: | ||
<span>Dry lab</span> | <span>Dry lab</span> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Addon#ribo">Addon: ribo</a></li> |
| − | <li><a href=" | + | <li><a href="./Addon#TALE">Addon: TALE</a></li> |
| − | <li><a href=" | + | <li><a href="./Addon#T2">Addon: T2</a></li> |
| − | <li><a href=" | + | <li><a href="./Model#Transcriptional_Amplifer">Model: transcriptional amplifer</a></li> |
| − | <li><a href=" | + | <li><a href="./Model#NotchLigandKinetics">Model: Notch-ligand kinetics</a></li> |
| − | <li><a href=" | + | <li><a href="./Software">Software</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 398: | Line 400: | ||
<span>Wet lab</span> | <span>Wet lab</span> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./InterLab">iGEM interLab</a></li> |
| − | <li><a href=" | + | <li><a href="./Notebook">Our notebook</a></li> |
| − | <li><a href=" | + | <li><a href="./Primers">Primers used</a></li> |
| − | <li><a href=" | + | <li><a href="./Protocols">Protocols</a></li> |
| − | <li><a href=" | + | <li><a href="./Safety">Safety</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 410: | Line 412: | ||
<span>Toolbox</span> | <span>Toolbox</span> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Basic_Parts">Basic parts</a></li> |
| − | <li><a href=" | + | <li><a href="./Composite_Parts">Composite parts</a></li> |
| − | <li><a href=" | + | <li><a href="./Optimization">Optimization</a></li> |
| − | <li><a href=" | + | <li><a href="./Parts_Collection">Parts collection</a></li> |
| − | <li><a href=" | + | <li><a href="./Improve">Parts improvement</a></li> |
| − | <li><a href=" | + | <li><a href="./Measurement">Quantification</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 421: | Line 423: | ||
<span>Outreach</span> | <span>Outreach</span> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Bio-Art">Bio-Art display</a></li> |
| − | <li><a href=" | + | <li><a href="./Collaborations">Collaborations</a></li> |
| − | <li><a href=" | + | <li><a href="./Design_Intention">Design intention</a></li> |
| − | <li><a href=" | + | <li><a href="./Human_Practices">Human practices</a></li> |
| − | <li><a href=" | + | <li><a href="./Public_Engagement">Public engagement</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 431: | Line 433: | ||
<span>Team</span> | <span>Team</span> | ||
<ul> | <ul> | ||
| − | <li><a href=" | + | <li><a href="./Acknowledgement">Acknowledgement</a></li> |
| − | <li><a href=" | + | <li><a href="./Attributions">Attributions</a></li> |
| − | <li><a href=" | + | <li><a href="./Heritage">Heritage</a></li> |
| − | <li><a href=" | + | <li><a href="./Team">Members</a></li> |
| − | <li><a href=" | + | <li><a href="./Sponsors">Sponsors</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
| Line 444: | Line 446: | ||
<div class="footer-copyright"> | <div class="footer-copyright"> | ||
<div class="container"> | <div class="container"> | ||
| − | + | <div class="contactUS row"> | |
| − | + | <div class="col s12 m6 l4"><i class="fa fa-location-arrow"></i> Life Sci Bldg E301, 2005 Songhu Rd, Shanghai | |
| − | + | </div><div class="col s12 m6 l2"><i class="fa fa-fax"></i> +86-21-31246727 | |
| − | + | </div><div class="col s12 m6 l2"><i class="fa fa-envelope-o"></i> igem@fudan.edu.cn | |
| − | + | </div><div class="col s12 m6 l4"><i class="fa fa-twitter"></i> <i class="fa fa-wechat"></i> Fudan_iGEM | |
| − | + | </div> | |
| − | + | </div> | |
| − | + | </div> | |
</div> | </div> | ||
</footer> | </footer> | ||
Revision as of 18:08, 6 November 2018
- Addon: ribo
- Addon: TALE
- Addon: T2
- Model: transcriptional amplifer
- Model: Notch-ligand kinetics
- Software
Our notebook
Monthly Highlights
April
- First functional SynNotch constructed
- Developed a simple testification method of SynNotch—shaking beads linked with antigen
- Transcription factor and promotor pairs constructed and tested
May
- SynNotch leakage problem detection
- Successfully constructed and tested the first mutated version of SynNotch
- Started constructing composite promoters for logic gates
June
- SynNotch with various extra- and intra-cellular domain construction
- SynNotch and composite promoter verification in cell
August
- Batch construction of plasmids used in “amplifier” and “combiner” layers for all sixteen logic
- Continual construction and testification of various mutation versions of SynNotch
September
- Successfully constructed double-stable cell line of two SynNotch receptors
- Finished constructing plasmids used in logic gates
October
- Parts construction
- All sixteen logic testification in cell
Abstract
Contact-dependent signaling is critical for multicellular biological events, yet customizing contact-dependent signal transduction between cells remains challenging. Here we have developed the ENABLE toolbox, a complete set of transmembrane binary logic gates. Each gate consists of 3 layers: Receptor, Amplifier, and Combiner. We first optimized synthetic Notch receptors to enable cells to respond to different signals across the membrane reliably. These signals, individually amplified intracellularly by transcription, are further combined for computing. Our engineered zinc finger-based transcription factors perform binary computation and output designed products. In summary, we have combined spatially different signals in mammalian cells, and revealed new potentials for biological oscillators, tissue engineering, cancer treatments, bio-computing, etc. ENABLE is a toolbox for constructing contact-dependent signaling networks in mammals. The 3-layer design principle underlying ENABLE empowers any future development of transmembrane logic circuits, thus contributes a foundational advance to Synthetic Biology.