Difference between revisions of "Team:TUDelft/Wetlab/Interlab"

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Revision as of 16:19, 4 October 2018

Interlab

1. Introduction

The InterLab studies have been contributing in developing a robust measurement procedure for green fluorescent protein (GFP) over several years now. The goal of this year’s InterLab to identify and correct the sources of systematic variability in synthetic biology measurements of GFP. In order to answer the following research question formulated by the iGEM Measurement Committee: Can we reduce lab-to-lab variability in fluorescence measurements by normalizing to absolute cell count or colony-forming units (CFU) instead of OD? The following two approaches were used to obtain results for this study:

   1. Converting between absorbance of cells to absorbance of a known
   concentration of beads.

   2. Counting colony-forming units (CFUs) from the sample.

The results of these two approaches were compared to determine how much the results were in accordance with each other to see whether using one (or both) of the methods can help to reduce the lab-to-lab variability in measurements. To get the best comparable results between all the teams performing the InterLab studies the InterLab Study Protocol was followed explicitly. The first step performed was the transformation of 8 strains with plasmids from the iGEM 2018 Distribution Kit. The different strains contained a Negative control, Positive control and 6 test strains which expressed different levels of GFP. The strains and their corresponding plasmids (parts) used from the Distribution Kit for transformation are shown in table 1. For transformation the iGEM protocol was used.

Strain Part Number Plate Location
Negative control BBa_R0040 Kit plate 7 Well 2D
Positive control BBa_I20270 Kit plate 7 Well 2B
Test Device 1 BBa_J364000 Kit plate 7 Well 2F
Test Device 2 BBa_J364001 Kit plate 7 Well 2H
Test Device 3 BBa_J364002 Kit plate 7 Well 2J
Test Device 4 BBa_J364007 Kit plate 7 Well 2L
Test Device 5 BBa_J364008 Kit plate 7 Well 2N
Test Device 6 BBa_J364009 Kit plate 7 Well 2P

Table 1: Test Devices. The 8 Test Devices created by transformation of Escherichia coli DH5⍺ with the 8 plasmids from the Distribution Kit.

2. Experimental Setup

Text about the experimental setup :):):)


Calibration figure 1 Calibration figure 2

3. Results

Text about the Results:):):)


3.1 More results

3.2 Results even more

4. Conclusion

Text about the conclusion:):):)