Difference between revisions of "Template:BOKU-Vienna/Description"
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However, we will only use one additional ON gene and no additional OFF gene. | However, we will only use one additional ON gene and no additional OFF gene. | ||
The ON gene contains coding sequence for a short lived GFP and will therefore be used as proof of concept.</p> | The ON gene contains coding sequence for a short lived GFP and will therefore be used as proof of concept.</p> | ||
| + | <p><br></p> | ||
<p>Our system has the ability to start or stop the expression of a gene of interest. | <p>Our system has the ability to start or stop the expression of a gene of interest. | ||
By simply getting activated with the help of a signal molecule once, the state (ON or OFF) will sustain indefinitely, just like a lightbulb. | By simply getting activated with the help of a signal molecule once, the state (ON or OFF) will sustain indefinitely, just like a lightbulb. | ||
This system is based on a so-called toggle-switch which consists of two NOR-gates that use an integrated dCas9 System, where specific guide RNAs bind to a DNA strand and thereby block the transcription. | This system is based on a so-called toggle-switch which consists of two NOR-gates that use an integrated dCas9 System, where specific guide RNAs bind to a DNA strand and thereby block the transcription. | ||
| − | < | + | <img src="https://static.igem.org/mediawiki/2018/d/db/T--BOKU-Vienna--2018_toggleswitch.png" alt="toggleswitch.png"></p> |
| + | <p><br></p> | ||
<p>A NOR-gate is the result of the negation of the OR operator, which behaves according to the following truth table.</p> | <p>A NOR-gate is the result of the negation of the OR operator, which behaves according to the following truth table.</p> | ||
| − | <table> | + | <p><br></p> |
| − | <tr> | + | <p><table class="table table-dark"> |
| − | <th colspan="2">Input</th> | + | <thead> |
| − | <th>Output</th> | + | <tr> |
| − | </tr> | + | <th scope="col" colspan="2">Input</th> |
| − | <tr> | + | <th scope="col">Output</th> |
| − | <td>A</td> | + | </tr> |
| − | <td>B</td> | + | <tr> |
| − | <td>A NOR B</td> | + | <td>A</td> |
| − | </tr> | + | <td>B</td> |
| − | <tr> | + | <td>A NOR B</td> |
| − | <td>0</td> | + | </tr> |
| − | <td>0</td> | + | </thead> |
| − | <td>1</td> | + | <tbody></tbody></table></p> |
| − | </ | + | <p><tr></tr></p> |
| − | <tr> | + | <p><td>0</td></p> |
| − | <td>1</td> | + | <p><td>0</td></p> |
| − | <td>0</td> | + | <p><td>1</td> |
| − | <td>0</td> | + | </p> |
| − | </ | + | <p><tr></tr></p> |
| − | <tr> | + | <p><td>1</td></p> |
| − | <td>0</td> | + | <p><td>0</td></p> |
| − | <td>1</td> | + | <p><td>0</td> |
| − | <td>0</td> | + | </p> |
| − | </ | + | <p><tr></tr></p> |
| − | <tr> | + | <p><td>0</td></p> |
| − | < | + | <p><td>1</td></p> |
| − | <td>1</td> | + | <p><td>0</td> |
| − | <td> | + | </p> |
| − | </ | + | <p><tr></tr></p> |
| − | </ | + | <p><td>1</td></p> |
| + | <p><td>1</td></p> | ||
| + | <p><td>0</td> | ||
| + | |||
| + | |||
| + | <br></p> | ||
<p>As signals to control the toggle-switch we designed a copper, ethanol and estradiol pathway.</p> | <p>As signals to control the toggle-switch we designed a copper, ethanol and estradiol pathway.</p> | ||
<p>However, neither of those would work well in agricultural applications. | <p>However, neither of those would work well in agricultural applications. | ||
Revision as of 12:07, 15 October 2018
Project Description:
The system is based on a dCas9 toggle switch.
The ON and OFF gene classes comprise a strong constitutive promoter with an RNA polymerase II binding site and multiple copies of the same gRNA target site downstream next to it. All genes in a class are controlled by the same regulatory region, meaning their gene products are expressed simultaneously. At least one gene in each class codes for an RNA construct consisting of a gRNA sequence, flanked by two autonomously folding catalytic RNA sequences, which lead to the production of free gRNA when transcribed. Other genes in the ON genes class code for proteins which should be only expressed in the ON state of the system. Vice versa OFF genes encode for OFF state proteins. In theory there could be any number and combinations of genes which can define one of the states. However, we will only use one additional ON gene and no additional OFF gene. The ON gene contains coding sequence for a short lived GFP and will therefore be used as proof of concept.
Our system has the ability to start or stop the expression of a gene of interest.
By simply getting activated with the help of a signal molecule once, the state (ON or OFF) will sustain indefinitely, just like a lightbulb.
This system is based on a so-called toggle-switch which consists of two NOR-gates that use an integrated dCas9 System, where specific guide RNAs bind to a DNA strand and thereby block the transcription.
<img src="
" alt="toggleswitch.png">
A NOR-gate is the result of the negation of the OR operator, which behaves according to the following truth table.
| Input | Output | |
|---|---|---|
| A | B | A NOR B |
<tr></tr>
<td>0</td>
<td>0</td>
<td>1</td>
<tr></tr>
<td>1</td>
<td>0</td>
<td>0</td>
<tr></tr>
<td>0</td>
<td>1</td>
<td>0</td>
<tr></tr>
<td>1</td>
<td>1</td>
<td>0</td>
As signals to control the toggle-switch we designed a copper, ethanol and estradiol pathway.
However, neither of those would work well in agricultural applications. Choosing and designing these signal-molecules will be a very important step in future developments of this system, because they should not interfere with the ecosystem. As a reporter system for proof of concept in the laboratory we will use a short-lived ubiquitin GFP with a half-life of 7 minutes.