Difference between revisions of "Team:HUST-China/Modeling overview"
| Line 105: | Line 105: | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Comparison between PSB">Comparison between PSB</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Comparison between PSB">Comparison between PSB</a></li> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Sort of three genes">Sort of three genes</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Sort of three genes">Sort of three genes</a></li> | ||
| − | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/ | + | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Software">Intelligent device software</a></li> |
</ul> | </ul> | ||
</li> | </li> | ||
| Line 114: | Line 114: | ||
<ul class="dropdown-menu"> | <ul class="dropdown-menu"> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Parts Overview">Parts Overview</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Parts Overview">Parts Overview</a></li> | ||
| − | |||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Composite part">Composite part</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Composite part">Composite part</a></li> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Part collection">Part collection</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Part collection">Part collection</a></li> | ||
| Line 123: | Line 122: | ||
<ul class="dropdown-menu"> | <ul class="dropdown-menu"> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Human Practices">Human Practices</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Human Practices">Human Practices</a></li> | ||
| − | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Education | + | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Education Engagement">Education&Engagement</a></li> |
</ul> | </ul> | ||
</li> | </li> | ||
Revision as of 11:58, 16 October 2018
Modeling overview
1. Overview
This year, our job can be mainly divided into three parts: Comparison of Rhodopseudomonas and Cyanobacteria, sort of three genes pathway in Rhodopseudomonas, and intelligent device software.
2. Comparison between PSB
In order to produce Lactate， we have two methods, using Cyanobacteria or Rhodopseudomonas. Cyanobacteria is used widely in the laboratory and has many papers to support.，Because it is more efficient and easier to control. But Shewanella is heterotrophic facultative anaerobes, and produces electricity only in anaerobic environment (Justin et al.2009). So we think Rhodopseudomonas may be better to act as an producer so the cycle photophosphorylation does not produce oxygen. But Rhodopseudomonas is not as efficient as Cyanobacteria. So we use computer simulation to find which one is better.
3. Sort of three genes
In Rhodopseudomonas, the sequence of genes in plasmid influences them expression ability. (Shou-Chen.2012) We have three genes to transfer. So we should find out which gene is the most important, and we sort three genes by their importance.
3. Intelligent device software
Using a new multi-culture bacteria system means that we should use a new fermentation strategy. So we use algorithm to know the situation of the system and decide how to control the device, so that the system will work more efficiently and steadily. Reference
Reference
[1] Justin L. Burns, Thomas J. DiChristina. 2009. Anaerobic Respiration of Elemental Sulfur and Thiosulfate by Shewanella oneidensis MR-1 Requires psrA, a Homolog of the phsA Gene of Salmonella enterica Serovar Typhimurium LT2. American Society for Microbiology Journals
[2] 2.Shou-Chen Lo. 2012. Enhancement of Hydrogen Production and Carbon Fixation in Purple Nonsulfur Bacterium by Synthetic Biology. Ph.D. Dissertation
