Difference between revisions of "Team:Kyoto/Improve"
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<center><img src="https://static.igem.org/mediawiki/2018/9/90/T--Kyoto--improve.fig2.png" ></center> | <center><img src="https://static.igem.org/mediawiki/2018/9/90/T--Kyoto--improve.fig2.png" ></center> | ||
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| + | Figure2 Intracellular Na+ concentration (mM) of S. cerevisiae ena1- strain expressing AtNHXS1 or SseNHX1.</center></p> | ||
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| + | Based on the above two observations, we carefully compared the two homologous genes, SseNHX1 and AtNHXS1, and concluded that SseNHX1 is an improved version of AtNHXS1 in some features. | ||
</p> | </p> | ||
<img src="https://2018.igem.org"><p>picture here</p> | <img src="https://2018.igem.org"><p>picture here</p> | ||
Revision as of 18:37, 17 October 2018
タイトル？？
This year, we tried to improve AtNHXS1. AtNHX1 encodes a Na+/H+ antipoter located on the vacuole menbrane of A. thaliana. AtNHXS1 is a modified version of AtNHX1, created by DNA shuffling to improve NaCl resistance.
Based on a paper, we here created a new part, SseNHX1, which is an improved version of AtNHXS1. SseNHX1 was also created by DNA shuffling, with a combination of Salicomia europaea enzyme SeNHX1 and Suaeda salsa enzyme SsNHX1. It was reported that SseNHX1 show faster kinetics on the import of Na+ to the vacuoles than other relatives.
We characterized SseNHX1 by in vivo colony formation assay for the salt tolerance and flame photometry for the Na+ uptake into the cells.
Figure1. Colony formation assay
Panel 1-3: NaCl 0 mM, Panel 4-6: NaCl 300 mM Overnight cultures of the S. cerevisiae ena1- strain carrying each plasmid were serial diluted and spotted on a salt-containing SD plate. Colonies were photographed after 2 days incubation at 30oC. SseNHX1 and AtNHX1, separately cloned into pRS313, a low-copy-number plasmid, were expressed from TDH3 promoter. Control strain carrys empty vectors.
As shown in Figure1, both SseNHX1 and AtNHXS1 show salt tolerance effect on ena1- strain when compared to the wild type. Remarkably, the effect was much greater in SseNHX1 strain than AtNHXS1 strain.
•Measurement of intracellular Na+ concentration by flame photometry
We evaluated the Na+ uptake efficiency by SseNHX1 and AtNHXS1 by measuring intracellular Na+ concentration. When SseNHX1-expressing strain was grown in 400 mM NaCl containing media, the average concentration of intracellular Na+ was 50.6 mM. On the other hand, when AtNHX1 was used, the intracellular Na+ was 49.2 mM. We concluded that SseNHX1 is slightly superior to AtNHXS1 in this assay.
Based on the above two observations, we carefully compared the two homologous genes, SseNHX1 and AtNHXS1, and concluded that SseNHX1 is an improved version of AtNHXS1 in some features.
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Workshop with high school students
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Presentation at ISS
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Learning Lounge
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