Difference between revisions of "Team:Kyoto/Discussion"

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First of all, it will be necessary to raise the halotolerance of yeast. Since wild-type yeast has multiple pumps exhausting Na+ outside, yeast can grow even in the solution of NaCl concentration 1000mM (inhibition of growth is seen). However, in order to store Na+ inside of yeast, it is necessary to turn off these pumps. As seen in this study, in such strains, yeast becomes sensitive even to solution of very low NaCl concentrations. It is necessary to improve so that such susceptible yeast can grow with maintaining the ability to take Na + from the external solution, even if the salt concentration is higher than usual.
 
First of all, it will be necessary to raise the halotolerance of yeast. Since wild-type yeast has multiple pumps exhausting Na+ outside, yeast can grow even in the solution of NaCl concentration 1000mM (inhibition of growth is seen). However, in order to store Na+ inside of yeast, it is necessary to turn off these pumps. As seen in this study, in such strains, yeast becomes sensitive even to solution of very low NaCl concentrations. It is necessary to improve so that such susceptible yeast can grow with maintaining the ability to take Na + from the external solution, even if the salt concentration is higher than usual.
 
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In this experiment, mangrin and ZrGPD1 were used and had the effect of increasing salt tolerance. In the project regarding these facts, we merely expressed the sequence in nature using the constitutive promoters as it was. Searching for sequences that are more effective against salt tolerance or modifying expression levels or localization signals will leave room for further modification that leads to further salt tolerance increase. Also, ZrGPD1 acts as a compatible solute by producing a large amount of glycerol. But, in addition to this factor, there is a report that giving yeast high salt tolerance succeeded by simultaneously expressing the glycerol transporters encoded by ZrFPS1, in the past reports.(https://www.ncbi.nlm.nih.gov/pubmed/23673487).This time we tried to clone this factor, but it did not succeed. By adding such a tool, salt tolerance of yeast may improve dramatically. </p>
  
  

Revision as of 22:22, 17 October 2018

Team:Kyoto/Project - 2018.igem.org




1)Summary of our research

We worked on the construction of the yeast “Swallowmyces cerevisiae” which absorbs NaCl from solution and adjusts the salt concentration of the solution. We created a gene-disrupted strain designed to make Na+ inside the cell, expressed the chaperone and produced the compatible solute to reduce the damage the cell receives from high salt concentration. And, we added a variety of genes for taking Na+ into the vacuole to the collection of BioBrick parts. With the help of mathematical modeling optimizing the system, eventually we produced a yeast that retains averagely 80mM of Na+ into the cell. Also, we performed the model experiment that this device really absorbed Na+ from all over the solution and demonstrated the decrease of Na+ in solution by it.



2)Performance and application of "Swallowmyces cerevisiae"

Our early purpose was to assist the operation of other devices by lowering the salt concentration of the aqueous solution in the test tube in this device.


Our pilot experiments showed the salt concentration in a solution of 1000mM of the solution and 500mM, differ in the repertory of proteins interacting nonspecifically with GFP.As can be inferred from this example, if we really aim the effect of helping functions of other devices, it is worth working on the desalination from solution of NaCl concentration 1000mM with a little up from the current salt concentration range. The current system is still the first prototype, and it seems to be necessary to add various improvements after this.


There are several possible suggestions for concrete improvement.


First of all, it will be necessary to raise the halotolerance of yeast. Since wild-type yeast has multiple pumps exhausting Na+ outside, yeast can grow even in the solution of NaCl concentration 1000mM (inhibition of growth is seen). However, in order to store Na+ inside of yeast, it is necessary to turn off these pumps. As seen in this study, in such strains, yeast becomes sensitive even to solution of very low NaCl concentrations. It is necessary to improve so that such susceptible yeast can grow with maintaining the ability to take Na + from the external solution, even if the salt concentration is higher than usual.


In this experiment, mangrin and ZrGPD1 were used and had the effect of increasing salt tolerance. In the project regarding these facts, we merely expressed the sequence in nature using the constitutive promoters as it was. Searching for sequences that are more effective against salt tolerance or modifying expression levels or localization signals will leave room for further modification that leads to further salt tolerance increase. Also, ZrGPD1 acts as a compatible solute by producing a large amount of glycerol. But, in addition to this factor, there is a report that giving yeast high salt tolerance succeeded by simultaneously expressing the glycerol transporters encoded by ZrFPS1, in the past reports.(https://www.ncbi.nlm.nih.gov/pubmed/23673487).This time we tried to clone this factor, but it did not succeed. By adding such a tool, salt tolerance of yeast may improve dramatically.



3)Biocontainment system



4)

Reference
  • [1]
  • [2]
  • [3]
  • [4]
  • [5]
  • [6]
  • [7]
  • [8]