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li{margin-bottom:0;} | li{margin-bottom:0;} | ||
</style> | </style> | ||
+ | |||
+ | |||
+ | <html> | ||
+ | |||
+ | <head> | ||
+ | <meta http-equiv="refresh" content="1800;URL='pigeondone.html'"> | ||
+ | </head> | ||
+ | |||
+ | <body bgcolor="#ffffff"> | ||
+ | |||
+ | <script type="text/javascript"> | ||
+ | |||
+ | var _gaq = _gaq || []; | ||
+ | _gaq.push(['_setAccount', 'UA-40053177-1']); | ||
+ | _gaq.push(['_trackPageview']); | ||
+ | |||
+ | (function() { | ||
+ | var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true; | ||
+ | ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js'; | ||
+ | var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s); | ||
+ | })(); | ||
+ | |||
+ | </script> | ||
+ | |||
+ | <font face = "Arial"> | ||
+ | <center> | ||
+ | <hr width=25%> | ||
+ | <img src=sbolpicgen.png width=475> | ||
+ | <h1> | ||
+ | Pigeon | ||
+ | </h1> | ||
+ | <h3> | ||
+ | Design Visualizer for Synthetic Biology | ||
+ | </h3> | ||
+ | <hr width=25%> | ||
+ | </center> | ||
+ | |||
+ | <center> | ||
+ | <table width=900> | ||
+ | <tr><td> | ||
+ | Syntax: | ||
+ | |||
+ | |||
+ | A list of | ||
+ | <em>type [name] [color] [nl]</em> | ||
+ | |||
+ | where <em>type</em> is one of <em>p, P, c, r, t, T, s, o, >, <, | or - </em>; | ||
+ | |||
+ | a blank line; | ||
+ | |||
+ | followed by | ||
+ | |||
+ | <em> name ind | rep name</em> | ||
+ | |||
+ | There are 14 colors labeled 1 to 14. These appear as the third item in each line. | ||
+ | Even numbers are darker versions of the odd numbered colors in the following order of hues: blue, green, red, orange, | ||
+ | purple, yellow, and black. | ||
+ | |||
+ | |||
+ | An ``nl'' as a fourth item removes the label for that element. | ||
+ | |||
+ | Characters < and > before p and c give inverse p and c. | ||
+ | |||
+ | <br> | ||
+ | <h3> | ||
+ | Color codes: | ||
+ | </h3> | ||
+ | <center> | ||
+ | <img src=colorcode.png width=600> | ||
+ | </center> | ||
+ | <br> | ||
+ | <h3> | ||
+ | Glyph codes: | ||
+ | </h3> | ||
+ | <center> | ||
+ | <img src=pigeonlist.png width=1300> | ||
+ | </center> | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | <center> | ||
+ | |||
+ | <p> | ||
+ | <b>TIP: You can access Pigeon via Perl using <a href = pigget.txt target = blank>pigget.pl</a>.</b> | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | <b>TIP: <font color="#aa0000">You can provide feedback on Pigeon through the Pigeon Forum <a href=feedback.html target=blank>here</a>.</font></b> | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | <b>TIP: You can find Pigeon examples <a href=pigeonHelp.html target=blank>here</a>.</b> | ||
+ | </p> | ||
+ | <p> | ||
+ | <b>TIP: You can read about Pigeon <a href=http://pubs.acs.org/doi/abs/10.1021/sb400024s target=blank>here</a>.</b> | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | <b>TIP: <font color="#00cc00"> Try out the new Pigeon GUI <a href=http://pigeon.synbiotools.org target=blank>here</a>.</font></b> | ||
+ | </p> | ||
+ | |||
+ | <br> | ||
+ | <br> | ||
+ | |||
+ | <p>You are connecting from 137.122.64.159:37698.</p> | ||
+ | |||
+ | <form action = "pigeon.php" method = "post" > | ||
+ | |||
+ | <p> | ||
+ | <textarea name = "desc" rows=10 cols=75/> | ||
+ | o A 1 | ||
+ | <t t | ||
+ | <c c2 2 | ||
+ | <r r1 1 | ||
+ | <p p1 6 | ||
+ | s spacer 9 | ||
+ | p p2 2 | ||
+ | r r2 5 | ||
+ | c c1 6 | ||
+ | t t | ||
+ | o B 1 | ||
+ | z ori 1 | ||
+ | ? Amp 1 | ||
+ | v KanR 1 | ||
+ | # Arcs | ||
+ | c1 rep p1 | ||
+ | c2 rep p2 | ||
+ | y rep c1-p1 | ||
+ | x rep c2-p2 | ||
+ | </textarea> | ||
+ | |||
+ | <p> | ||
+ | <!-Top arcs only: <input type = "checkbox" checked = "Checked" name = "topOnly" value = "Yes"/> | ||
+ | |||
+ | <input type = "submit" value = "Pigeon!"/> | ||
+ | </p> | ||
+ | |||
+ | </form> | ||
+ | <td><tr> | ||
+ | </table> | ||
+ | </center> | ||
+ | |||
+ | <center> | ||
+ | <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/3.0/"><img alt="Creative Commons License" style="border-width:0" src="http://i.creativecommons.org/l/by-nc-sa/3.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/3.0/">Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License</a>. | ||
+ | </center> | ||
+ | |||
+ | |||
+ | <!-- Start of StatCounter Code for Default Guide --> | ||
+ | <!-- Default Statcounter code for Synbiotools.org | ||
+ | http://synbiotools.org --> | ||
+ | <script type="text/javascript"> | ||
+ | var sc_project=10903722; | ||
+ | var sc_invisible=0; | ||
+ | var sc_security="6fd33081"; | ||
+ | var scJsHost = (("https:" == document.location.protocol) ? | ||
+ | "https://secure." : "http://www."); | ||
+ | document.write("<sc"+"ript type='text/javascript' src='" + | ||
+ | scJsHost+ | ||
+ | "statcounter.com/counter/counter.js'></"+"script>"); | ||
+ | </script> | ||
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+ | href="http://statcounter.com/" target="_blank"><img | ||
+ | class="statcounter" | ||
+ | src="//c.statcounter.com/10903722/0/6fd33081/0/" alt="Web | ||
+ | Analytics"></a></div></noscript> | ||
+ | <!-- End of Statcounter Code --> | ||
+ | <a | ||
+ | href="http://statcounter.com/p10903722/?guest=1">stats</a> | ||
+ | </body> | ||
+ | |||
+ | |||
+ | </html> | ||
</html> | </html> |
Revision as of 21:44, 13 August 2018
Pigeon
Design Visualizer for Synthetic Biology
Syntax:
A list of
type [name] [color] [nl]
where type is one of p, P, c, r, t, T, s, o, >, <, | or - ;
a blank line;
followed by
name ind | rep name
There are 14 colors labeled 1 to 14. These appear as the third item in each line.
Even numbers are darker versions of the odd numbered colors in the following order of hues: blue, green, red, orange,
purple, yellow, and black.
An ``nl'' as a fourth item removes the label for that element.
Characters < and > before p and c give inverse p and c.
Color codes:Glyph codes:TIP: You can access Pigeon via Perl using pigget.pl. TIP: You can provide feedback on Pigeon through the Pigeon Forum here. TIP: You can find Pigeon examples here. TIP: You can read about Pigeon here. TIP: Try out the new Pigeon GUI here. You are connecting from 137.122.64.159:37698. |
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License.
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