|
|
| Line 17: |
Line 17: |
| | </style> | | </style> |
| | | | |
| − | | + | <html> |
| − | <html> | + | <head> |
| − | | + | <meta charset="utf-8"> |
| − | <head> | + | <title>HelloWorld</title> |
| − | <meta http-equiv="refresh" content="1800;URL='pigeondone.html'"> | + | </head> |
| − | </head> | + | <body> |
| − | | + | |
| − | <body bgcolor="#ffffff"> | + | |
| − | | + | <script src="http://d3js.org/d3.v3.min.js" charset="utf-8"></script> |
| − | <script type="text/javascript">
| + | <script> |
| − | | + | d3.select("body").selectAll("p").text("www.ourd3js.com"); |
| − | var _gaq = _gaq || []; | + | </script> |
| − | _gaq.push(['_setAccount', 'UA-40053177-1']);
| + | </body> |
| − | _gaq.push(['_trackPageview']);
| + | |
| − | | + | |
| − | (function() {
| + | |
| − | var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
| + | |
| − | ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
| + | |
| − | var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
| + | |
| − | })();
| + | |
| − | | + | |
| − | </script> | + | |
| − | | + | |
| − | <font face = "Arial">
| + | |
| − | <center>
| + | |
| − | <hr width=25%>
| + | |
| − | <img src=sbolpicgen.png width=475>
| + | |
| − | <h1>
| + | |
| − | Pigeon | + | |
| − | </h1> | + | |
| − | <h3> | + | |
| − | Design Visualizer for Synthetic Biology
| + | |
| − | </h3>
| + | |
| − | <hr width=25%>
| + | |
| − | </center>
| + | |
| − | | + | |
| − | <center>
| + | |
| − | <table width=900>
| + | |
| − | <tr><td>
| + | |
| − | Syntax:
| + | |
| − | | + | |
| − | | + | |
| − | A list of
| + | |
| − | <em>type [name] [color] [nl]</em>
| + | |
| − | | + | |
| − | where <em>type</em> is one of <em>p, P, c, r, t, T, s, o, >, <, | or - </em>;
| + | |
| − | | + | |
| − | a blank line;
| + | |
| − | | + | |
| − | followed by
| + | |
| − | | + | |
| − | <em> name ind | rep name</em>
| + | |
| − | | + | |
| − | There are 14 colors labeled 1 to 14. These appear as the third item in each line.
| + | |
| − | Even numbers are darker versions of the odd numbered colors in the following order of hues: blue, green, red, orange,
| + | |
| − | purple, yellow, and black.
| + | |
| − | | + | |
| − | | + | |
| − | An ``nl'' as a fourth item removes the label for that element.
| + | |
| − | | + | |
| − | Characters < and > before p and c give inverse p and c.
| + | |
| − | | + | |
| − | <br>
| + | |
| − | <h3>
| + | |
| − | Color codes:
| + | |
| − | </h3> | + | |
| − | <center>
| + | |
| − | <img src=colorcode.png width=600>
| + | |
| − | </center>
| + | |
| − | <br>
| + | |
| − | <h3>
| + | |
| − | Glyph codes:
| + | |
| − | </h3>
| + | |
| − | <center>
| + | |
| − | <img src=pigeonlist.png width=1300>
| + | |
| − | </center>
| + | |
| − | | + | |
| − | <br>
| + | |
| − | <br>
| + | |
| − | | + | |
| − | <center>
| + | |
| − | | + | |
| − | <p>
| + | |
| − | <b>TIP: You can access Pigeon via Perl using <a href = pigget.txt target = blank>pigget.pl</a>.</b> | + | |
| − | </p>
| + | |
| − | | + | |
| − | <p>
| + | |
| − | <b>TIP: <font color="#aa0000">You can provide feedback on Pigeon through the Pigeon Forum <a href=feedback.html target=blank>here</a>.</font></b>
| + | |
| − | </p>
| + | |
| − | | + | |
| − | <p>
| + | |
| − | <b>TIP: You can find Pigeon examples <a href=pigeonHelp.html target=blank>here</a>.</b>
| + | |
| − | </p>
| + | |
| − | <p>
| + | |
| − | <b>TIP: You can read about Pigeon <a href=http://pubs.acs.org/doi/abs/10.1021/sb400024s target=blank>here</a>.</b>
| + | |
| − | </p>
| + | |
| − | | + | |
| − | <p>
| + | |
| − | <b>TIP: <font color="#00cc00"> Try out the new Pigeon GUI <a href=http://pigeon.synbiotools.org target=blank>here</a>.</font></b>
| + | |
| − | </p>
| + | |
| − | | + | |
| − | <br>
| + | |
| − | <br>
| + | |
| − | | + | |
| − | <p>You are connecting from 137.122.64.159:37698.</p>
| + | |
| − | | + | |
| − | <form action = "pigeon.php" method = "post" >
| + | |
| − | | + | |
| − | <p>
| + | |
| − | <textarea name = "desc" rows=10 cols=75/>
| + | |
| − | o A 1
| + | |
| − | <t t
| + | |
| − | <c c2 2
| + | |
| − | <r r1 1
| + | |
| − | <p p1 6
| + | |
| − | s spacer 9
| + | |
| − | p p2 2
| + | |
| − | r r2 5
| + | |
| − | c c1 6
| + | |
| − | t t
| + | |
| − | o B 1
| + | |
| − | z ori 1
| + | |
| − | ? Amp 1
| + | |
| − | v KanR 1
| + | |
| − | # Arcs
| + | |
| − | c1 rep p1
| + | |
| − | c2 rep p2
| + | |
| − | y rep c1-p1
| + | |
| − | x rep c2-p2
| + | |
| − | </textarea> | + | |
| − | | + | |
| − | <p>
| + | |
| − | <!-Top arcs only: <input type = "checkbox" checked = "Checked" name = "topOnly" value = "Yes"/> | + | |
| − |
| + | |
| − | <input type = "submit" value = "Pigeon!"/>
| + | |
| − | </p>
| + | |
| − | | + | |
| − | </form>
| + | |
| − | <td><tr>
| + | |
| − | </table>
| + | |
| − | </center>
| + | |
| − | | + | |
| − | <center>
| + | |
| − | <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/3.0/"><img alt="Creative Commons License" style="border-width:0" src="http://i.creativecommons.org/l/by-nc-sa/3.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/3.0/">Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License</a>.
| + | |
| − | </center> | + | |
| − | | + | |
| − | | + | |
| − | <!-- Start of StatCounter Code for Default Guide -->
| + | |
| − | <!-- Default Statcounter code for Synbiotools.org
| + | |
| − | http://synbiotools.org -->
| + | |
| − | <script type="text/javascript">
| + | |
| − | var sc_project=10903722;
| + | |
| − | var sc_invisible=0;
| + | |
| − | var sc_security="6fd33081";
| + | |
| − | var scJsHost = (("https:" == document.location.protocol) ?
| + | |
| − | "https://secure." : "http://www.");
| + | |
| − | document.write("<sc"+"ript type='text/javascript' src='" +
| + | |
| − | scJsHost+
| + | |
| − | "statcounter.com/counter/counter.js'></"+"script>");
| + | |
| − | </script> | + | |
| − | <noscript><div class="statcounter"><a title="Web Analytics"
| + | |
| − | href="http://statcounter.com/" target="_blank"><img
| + | |
| − | class="statcounter"
| + | |
| − | src="//c.statcounter.com/10903722/0/6fd33081/0/" alt="Web
| + | |
| − | Analytics"></a></div></noscript>
| + | |
| − | <!-- End of Statcounter Code -->
| + | |
| − | <a
| + | |
| − | href="http://statcounter.com/p10903722/?guest=1">stats</a>
| + | |
| − | </body> | + | |
| − | | + | |
| − | | + | |
| | </html> | | </html> |
| − |
| |
| − |
| |
| | | | |
| | </html> | | </html> |
