Team:FJNU-China/Improve
Improve
| Part Number | Type | Part | Description | Length(bp) |
|---|---|---|---|---|
| BBa_K2570020 | Coding | proU+GFP+mazF | This is an improved version of BBa_K2467001. | 1385 |
| BBa_K2570021 | Coding | dsrA+B0034+GFP+B0032+mazF | XXX | 1281 |
| BBa_K2570022 | Coding | araC＋mazf+GFP | This is an improved version of BBa_K1405008. | 2320 |
Description
This year, we have improved 2 previous projects. The first one is the project of 2016 BIT-China, and another one is the project of 2017 CMUQ. We have improved 3 BioBricks, BBa_K2570020, BBa_K2570021, BBa_K2570022 andsent the improved parts to iGEM headquarters in October, 2018.
Improvement of 2016 BIT-China and 2017 CMUQ
To kill the slacker bacteria in time, The 2016 BIT-China iGEM Team chose to construct circuits with toxin genes mazF . And here they designed circuits to verify the function, which is araC+pBAD+B0032+mazF, (BBa_K2120002). We are curious about the effects of different promoters on the expression of toxin proteins and we further explore and validate them. At the same time, our team conducted a characterization experiment on the wildtype promoter sequence of the E.coli proU operon from 17 CMUQ which functions as an osmolarity sensor (BBa_K2467001), obtained detailed data and uploaded it to the corresponding page.
Expand the mazF expression system and characterizing the proU promoter
Firstly, we explored the effect of toxin protein expression under the control of a salt-controlled promoter. We set different salt concentrations as experimental variables, and we added green fluorescent protein for characterization. Part: BBa_K2570020 proU+B0034+GFP+B0032+mazF
Fig 1. (A) A schematic diagram of a salt-controlled promoter expressing the toxin protein (mazF) circuit. (B) Fluorescence levels per OD at different salt concentrations. (C) Fluorescence images at different salt concentrations.
We set the salt concentration 0mm, 50mm, 100mm, 300mm, 500mm (NaCl). In Fig. 1, at the same OD value, the measured GFP fluorescence value increased with increasing salt concentration. In addition, green fluorescence at different salt concentrations can be visually observed, and it is concluded that an increase in salt concentration before 300mM NaCl enhances the expression of a salt-controlled promoter, an increase in the expression of green fluorescent protein, and an increase in GFP fluorescence value. At a salt concentration of 300 mM NaCl to 500 mM NaCl, the fluorescence intensity at the unit OD value is weakened. We speculate that higher salt concentrations have an adverse effect on cell growth and salt-controlled promoter expression. In the experiment, the ideas of quantification and correction of Interlab guided our data analysis.
Secondly,we explored the effect of toxin protein expression under the control of a temperature promoter. We set different temperature as experimental variables, and we added green fluorescent protein for characterization. Part: BBa_K2570021 dsrA+B0034+GFP+B0032+mazF
Fig 2. (A) Schematic diagram of a temperature controlled promoter expressing the toxin protein (mazF) circuit. (B) Fluorescence levels per OD at different salt concentrations. (C) Fluorescence images at different salt concentrations.
We set the temperature concentration 25℃, 30℃, 35℃, 40℃. In Fig. 2, at the same OD value, the measured GFP fluorescence value increased with increasing culture temperature. In addition, the green fluorescence at different culture temperature can be visually observed, and it is concluded that an increase in culture temperature enhances the expression of a temperature controlled promoter, an increase in the expression of green fluorescent protein, and an increase in GFP fluorescence value. At the culture temperature of 40 degrees, the fluorescence intensity of the unit OD value was significantly weakened. We speculated that the higher culture temperature has an adverse effect on cell growth and temperature-controlled promoter expression.
Precise comparison
In addition, we transformed the araC+pBAD+B0032+mazF (BBa_K2120002) plasmid and set different concentrations of arabinose for induction expression. The araC+pBAD promoter can be controlled tightly by using arabinose. On the other hand, by measuring the OD value, the lethal efficiency of the toxin protein can only be roughly obtained. We obtain experimental data through more accurate experimental means for the control experiment design
Fig. 3 Point board data map. Reflects the lethal state of the toxin protein.
Using experimental methods different from the measured od value, we obtained more accurate experimental data, compared with the lethal efficiency of BBa_K2120002. Under the best conditions, our improved parts can achieve good lethal efficiency, and it is expected to be applied as a suicide switch in environmental projects. At the same time, we obtained the wild-type mazf toxin protein sequence from E. coli and conducted experiments as a positive control.