Team:IIT Kanpur/Results

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Results

Cloning of our device for optimizing extracellular expression using PelB/Ompt secretion tags under different Anderson promoters:

We used pSBIK3.m1 and pSB1C3 for cloning of our designed constructs. We synthesised our DNA construct via IDT. We added restriction enzyme site for Ecor1 and Pst1 in our synthesised double stranded DNA. We performed restriction enzyme digestion for both our double stranded DNA and backbones with Ecor1 and Pst1. These were ligated together.

These are the biobricks we submitted in iGEM registry.
BBa_K2874000
BBa_K2874001
BBa_K2874002

These are the sequences which we cloned but are not submitted with iGEM registry.
pBS1K3.m1 ( JA23100->pelB-LINKER-sfGFP-HIS-STOP)
pBS1K3.m1 ( JA23102->ompT-LINKER-sfGFP-HIS-STOP)

Furthermore we have analyzed using different techniques to detect if our construct facilitates extracellular expression of sfGFP.

Detecting protein secretion using different staining techniques in E.coli (DH5 alpha and Rosetta strain)

E.coli (DH5 alpha)

We first decided to test whether our cloned product could produce extracellular protein. We chose E.coli(DH5 alpha) as our first bacterial production system. We picked colonies and set Luria broth (LB) corresponding to the constructs as shown in the scheme below. We separated supernatant and pellet corresponding to each sample. These samples were further analyzed for protein content.

Ponceau S is a sodium salt of a diazo dye of a light red color, it is used a stain for rapid reversible detection of protein bands on nitrocellulose membrane(Western blotting).

We were able to detect protein bands corresponding to pellet for construct containing JA23100/JA23102/JA23105 upstream of PelB and sfGFP. In fig1.1 the well corresponding to these construct is represented by 1,2,3. Size of protein obtained was variable. Thus, no major conclusion could be made about the nature of protein at this point. Whereas we found no or not significant quantity of ponceau staining for pellet or supernatant for construct containing JA23102/JA23105 upstream of OmpT and sfGFP which are represented by 4,5,9,10 in Fig 1.1.
Following ponceau staining we performed western blotting using anti HIS (Histidine) antibody.

Detection of our secreted protein using antibody against HIS tag.

We used Horseradish peroxidase (HRP) conjugated anti HIS antibody to detect whether our protein is secreted out. We used varying strength of Anderson promoter with different secretion tags as described in previous experiment . We found that unlike the result obtained in ponceau staining we found no band corresponding to our protein of interest (~`35kDa) in pellet of the e.coli(DH5 alpha) cloned with our devices. Whereas, we found clear bands in 6,9,10 (`35kDa) well (fig 1.2). Whereas, faint bands for devices corresponding to well 7,8 were. This suggest that our device are able to drive extracellular expression of sfGFP via e.coli(DH5 alpha). J23100 was more efficient than J23102/J23105 in extracellular expression of protein via PelB tag. We found ompT tag was efficient in facilitating extracellular expression via both J23102 and J23105 promoters.

Western Blotting via Anti-HIS antibody to detect secretion of a protein via different secretion tags pelB/ompT under varying strengths of promoters.

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