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<img src="https://static.igem.org/mediawiki/2017/a/a8/T--CSMU_NCHU_Taiwan--safety-line.png" alt="" style="width:100%"> | <img src="https://static.igem.org/mediawiki/2017/a/a8/T--CSMU_NCHU_Taiwan--safety-line.png" alt="" style="width:100%"> | ||
<h2 id="d-detective">AMP System</h2> | <h2 id="d-detective">AMP System</h2> | ||
− | <p style="text-indent:2em"> | + | <p style="text-indent:2em">Aedes aegypti, a yellow fever mosquito, is a major arbovirus vector to transmit several diseases and spread mosquito-borne viruses such as dengue virus, Ziki virus, yellow fever viruses, etc. It can be genetically modified to control viral transmission. The cell line isolated from Aedes are widely used in the research. The full genome sequence and signaling pathways are defined in the literature. Therefore, it a good host for our study. In our project, we |
− | + | successfully cloned 3 AMP (GAM1, CecN, DefA) promoters from gDNA of Aedes aegypty and confirmed the sequencesby sequences by sequencing.</p> | |
− | <h3> | + | |
− | <p style="text-indent:2em"> | + | <h3>AMP promoters amplified by PCR</h3> |
− | <p style="text-indent:2em"> To | + | <p style="text-indent:2em">To create AMP reporter system, the AMP promoters of Aedes aegypti amplified from PCR were assembled with GFP-polyA /pSB1C3 (BBa_K2543003)</p> |
− | + | <p style="text-indent:2em">To test the function of the device, C6/36 cells were transfected with the vectors. And the mosquito cells were challenged with bacteria on 2 days after transfection.</p> | |
− | < | + | |
− | + | <h3>EXPERIMENT</h3> | |
− | < | + | <p>↓C6/36 cells were seeded at the density of 1.8 x 105 cell/well in a 96-well plate<br> |
− | + | ↓Cells were transfected with the AMP-GFP-polyA vectors<br> | |
− | + | ↓E. coli was added on 2 days post-transfection at MOI=10<br> | |
− | + | ↓GFP positive cells and intensity were analyzed by a fluorescence microscope and a microplate reader at Ex/Em = | |
− | + | 480/520 nm,respectively</p> | |
− | + | ||
<p style="text-indent:2em">Then we go further to search whether there is someone who has the similar idea with us. We found that there are methods like phage display that can produce scFv (single chain variable fragment)<sub>[12]</sub>. In our project, besides finding out the scFv combine to aflatoxin from a research published in 2012<sub>[13]</sub>, we will further more improve its function. In the traditional process, we have to bind gold nanoparticles to the antibody in order to observe the result on test strip. To replace this step, we put the sequence of Red Fluorescent Protein into DNA sequence when designing the fusion protein. What’s more the structure of scFv only contain the variable region of antibody, so the control line of the strip which have secondary antibody that bind to the constant region of primary antibody can’t work anymore.</p> | <p style="text-indent:2em">Then we go further to search whether there is someone who has the similar idea with us. We found that there are methods like phage display that can produce scFv (single chain variable fragment)<sub>[12]</sub>. In our project, besides finding out the scFv combine to aflatoxin from a research published in 2012<sub>[13]</sub>, we will further more improve its function. In the traditional process, we have to bind gold nanoparticles to the antibody in order to observe the result on test strip. To replace this step, we put the sequence of Red Fluorescent Protein into DNA sequence when designing the fusion protein. What’s more the structure of scFv only contain the variable region of antibody, so the control line of the strip which have secondary antibody that bind to the constant region of primary antibody can’t work anymore.</p> | ||
<p style="text-indent:2em">To deal with this problem and facilitate the process of purification, we add a His-tag at the end of the fusion protein. After putting the three-dimensional structure of protein into consideration, we add a rigid linker between the RFP and scFv to avoid interference between the two proteins when folding.</p> | <p style="text-indent:2em">To deal with this problem and facilitate the process of purification, we add a His-tag at the end of the fusion protein. After putting the three-dimensional structure of protein into consideration, we add a rigid linker between the RFP and scFv to avoid interference between the two proteins when folding.</p> |
Revision as of 06:50, 18 September 2018