Difference between revisions of "Team:ZJU-China/Hardware"

 
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<div class="tl">HARDWARE&nbsp;&nbsp;<h5>ABSTRACT&nbsp;&nbsp;</h5></div>
 
<div class="tl">HARDWARE&nbsp;&nbsp;<h5>ABSTRACT&nbsp;&nbsp;</h5></div>
 
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<p>We use a 2D printer to print materials onto IDE to modify it. Then we use breadboard to assemble each component and make an entire circuit. The circuit is connected to an iPhone through Bluetooth. We get some blood samples from Sir Run Run Shao Hospital and use them to certify the accuracy of our hardware and enzyme IDE. Everything proves to work fine. </p>
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<p>At the very beginning of hardware construction, all biological products and other auxiliary reagents (like Au nanoparticles and Nafion) have to immobilized on the electrode. To meet the need of large-scale manufacturing and high accuracy, we used a 2D printer to print these materials onto IDEs (<span style="font-weight: bolder;"> I</span>nter<span style="font-weight: bolder;">D</span>igital <span style="font-weight: bolder;">E</span>lectrode) to modify the Au-surface. Then we assembled IDEs, amplifier, convertor and digital interface to an entire circuit. The signal from the circuit is transmitted to an iPhone through Bluetooth. Several blood samples from a qualified Hospital were collected for access our hardwares and enzyme IDEs. </p>
 
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  <p style="text-align: center;"> Fig. 1  Work flow of our hardware </p>
 
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<span class="psg_ttl">2D printer</span>
 
<span class="psg_ttl">2D printer</span>
<p>The first part is a 2-Demension printer consists of three motors and an arduino uno board that can receive a photo and print it on a plat surface with our special ink. The printer’s main control board is based on a windows application named Steroduino which can nearly translate all kinds of photo into an two-dimension array that will be printed on the surface by the motors with the main control board.</p>
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<p>Our 2D printer consists of a constant-flow pump, motors, an Arduino Uno microcontroller. The printer’s user interface is based on a Windows software by Steamduino which support several file formats like CAD scripts or normal pictures. Imported files will be converted to 2D routes and transmitted to the microcontroller. The speed of motors and flow rate of the "ink" are controllable in the panel. Since the space between lead feet of IDEs is about 4 mm, the printer can reach an accuracy of 3 mm. The path-programmable printer offers more possibilities for developers to design on the level of electrodes. For example, separated areas of the chip can be modified with different enzymes. </p>
<img style="width: 60% !important; margin-top: 1em;" src="https://static.igem.org/mediawiki/2018/f/f3/T--ZJU-China--HD2dprinter.jpg" />
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<img style="width: 60% !important; margin-top: 1em;" src="https://static.igem.org/mediawiki/2018/b/be/T--ZJU-China--HD02.png" />
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<h5>Fig. 2 Real picture of a 2D printer and its control panel</h5>
 
<span class="psg_ttl">IDE (interdigital electrode) design</span>
 
<span class="psg_ttl">IDE (interdigital electrode) design</span>
<p>IDE (interdigital electrode) is composed of two interdigital electrodes with two connection tracks, on a insulative substrate. IDE is cheaper than normal electrode and can work with low volumes of sample. The interdigitated configuration typically enhances sensitivity and detection limits.</p>
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<p>IDE (interdigital electrode) is composed of two interdigital electrodes with two connection tracks, on an insulative substrate. IDE is cheaper than normal electrodes and can work with low volumes of sample. The interdigitated configuration typically enhances sensitivity and detection limits.</p>
<p style="margin-bottom: 1em !important;"></br>Taking our 2D-printer’s precision into consideration, we design our first generation of IDE (see Fig,1). The black part is 6×interdigital working electrodes, the green part is counter electrode and the red part is reference electrode. We plan to use Au as electrode material and PET as electrode base.</br></p>
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                    <p></br>The IDE circuit is planted on a PET (Polyethylene terephthalate) platform. And circuits itself are covered with copper, nickel and gold (in a manner from inside to surface) to enhance the conductivity. The current in side IDEs are led out through a FPC (Flexible Printed Circuit) connector which fits to the size of IDE lead feet.</p>
<img style="display: inline; width:36% !important; padding-left: 12% !important;" src="https://static.igem.org/mediawiki/2018/4/4c/T--ZJU-China--HDElectrode01.png" />
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<span class="psg_ttl psg_subtitle">First generation of IDE</span>
<img style="display: inline; width:40% !important;" src="https://static.igem.org/mediawiki/2018/1/19/T--ZJU-China--HDIDE.jpg" />
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<p style="margin-bottom: 1em !important;"></br>Taking our 2D-printer’s precision into consideration, we designed our first generation of IDE (see Fig. 1). The part with black lines is 6×interdigital working electrodes, the green part is a counter electrode and the red part is a reference electrode. But in the first design, two interdigital electrodes in pair are linked to the same lead foot which significantly lower the space for further DIY. </br></p>
<h5>Fig. 1    First generation of IDE</h5>
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<img style="display: inline; width: 70% !important; padding-left: 23% !important;" src="https://static.igem.org/mediawiki/2018/2/2b/T--ZJU-China--HD05.png" />
<p></br>To make it easier to adjust hardware for the above IDE and to print enzyme solution, we modify our IDE and create the second generation of IDE (see Fig.2). We design thicker working electrode and electrical contact, working electrode reaching the thickness of 0.44mm. And 0.48mm gap is left to avoid short circuit. And we separate each pair of interdigital electrode, following the principle of IDE design.</p>
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<h5><span style="width: 5% !important; vertical-align: top;">Fig 3.</span><span style="padding-left: 2%; width: 93% !important; text-align: left;">First generation of IDE. The part with black lines is 6×interdigital working electrodes, the green part is a counter electrode and the red part is a reference electrode.</span></h5>
<img src="https://static.igem.org/mediawiki/2018/e/ea/T--ZJU-China--HDElectrode02.jpg" />
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<span class="psg_ttl psg_subtitle">Second generation of IDE</span>
<h5>Fig. 2   Second generation of IDE</h5>
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<p>To make it easier to print protein solution to the surface and also for more possibility in further desgin, we modified our IDEs and create the second generation of IDEs (see Fig.2). In the new design, lead feet were enlarged to 0.44 mm. Gaps in between reached to 0.48 mm to avoid short circuit. And we separated each pair of interdigital electrode to 2 independent lead feet. </p>
<span class="psg_ttl">Integration</span>
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<img style="width: 70%; padding-left: 10%;" src="https://static.igem.org/mediawiki/2018/5/5b/T--ZJU-China--HD03.png" />
<p>To accurately describe the results of protein production, simplify user operations and save time, we developed a complete system consisting of two parts. That is converter and amplifier, reporter. </p>
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<h5><span style="width: 5% !important; vertical-align: top;">Fig 4.</span><span style="padding-left: 2%; width: 93% !important; text-align: left;">Second generation of IDE. The part with black lines is 6×interdigital working electrodes, the green part is a counter electrode and the red part is a reference electrode.</span></h5>
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<span class="psg_ttl">Integration </span>
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<p>As the chemical reaction signal is normally small (10<sup>-7</sup>-10<sup>-5</sup> A), a circuit which reaccepts the current signal must amplify the signal to a large voltage signal for sampling in microcontroller. And due to the characters of degenerative circuit, a convertor is needed for sampling subsequently.</p>
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<span class="psg_ttl psg_subtitle">integrated circuit design</span>
<p>We connect a Transimpedance Amplifiers together with a Bluetooth module an expansion on arduino nano board.</p>
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<p>We connect a Transimpedance Amplifier together with a Bluetooth module an expansion on Arduino Nano microcontroller. Following figure showed our main design and workable circuit we tested. This part of hardware can amplify currents produced on IDE and the amplification result is 1×106 times depend on impedance on the amplifier.<sup style="font-size:.6em">[1]</sup>
<img style="margin-top: 1em !important; width: 50% !important;" src="https://static.igem.org/mediawiki/2018/8/8a/T--ZJU-China--HDpanel.jpg" />
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<sup style="font-size: .4em !important;">[1]</sup></p>
<p></br>We printed the ink containing modified enzymes on IDE. IDE’s output ports are connected to the in-port of the second part with a very low electronic current which can accordingly form a voltage big enough that is sufficient to be detected by our detector. The detector is just an arduino nano board with an blueteeth board which, we use analog pin to detect the voltage and using blueteeth board to transfer the data to mobile phone running the WeChat mini-program which can show the data it received by blueteeth. In last part the reporter receives the voltage and transfer them with our algorithm into an actual current value, and then sends processed user-readable results to the applets on the user’s mobile phone. This app is developed in the WeChat Platform, here are some screen shoots in the app.</p>
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<img style="width: 70%; padding-left: 10%;"src="https://static.igem.org/mediawiki/2018/c/ca/T--ZJU-China--HD04.png" />
<img style="display: inline; width:36% !important; padding-left: 12% !important;" src="https://static.igem.org/mediawiki/2018/9/92/T--ZJU-China--HDWechat01.png" />
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<h5 style="line-height: 2em !important;">Fig 5. Integrated circuit design on amplifiers and convertors.</br></h5>
<img style="display: inline; width:40% !important;" src="https://static.igem.org/mediawiki/2018/9/9c/T--ZJU-China--HDWechat02.png" />
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<img style="width: 70%; padding-left: 10%;" src="https://static.igem.org/mediawiki/2018/4/4d/T--ZJU-China--HD06.png" />
<p></br>The hardware implementation not only solves the need to report wet experiment results, but also is much more user friendly, especially for non-professionals.</p>
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<h5 style="line-height: 2em !important;">Fig 6. Prototype on board while testing</h5>
<p></br>In order to verify the stability and accuracy, we conducted dozens of tests in the hospital using real blood samples and contacted the experts to evaluate the hardware.</p>
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<span class="psg_ttl psg_subtitle">Interface and software</span>
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<p>We printed the "ink" containing modified enzymes on IDEs. IDEs' output feet are connected to the in-port of the second part hardware with a small current and circuits can accordingly form a voltage big enough to be sampled. An Arduino Nano microcontrollor and a blueteeth module are used to transfer data to mobile phones running the WeChat (a well-known social media app) mini-program for visualization. Cell phones receive the voltage signal and transfer them into an actual current value by algorithm, and then send processed user-readable results to the applets. This app is developed in the WeChat Platform. Some screen shoots in the app are showed below.</p>
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<img style="width: 70%; padding-left: 10%;" src="https://static.igem.org/mediawiki/2018/8/84/T--ZJU-China--HD07.png" />
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<h5>Fig 7. Screen shots of prototype display</h5>
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<p></br>The hardware implementation not only solves the need to report wet experiment results, but also is much more user friendly, especially for non-professionals.In order to verify the stability and accuracy, we conducted dozens of tests in the hospital using real blood samples and contacted the experts to evaluate the hardware. In the figure showed below, the hardware model works well on distinguish patient samples and healthy samples. And the IDE chips response very quickly within 10s to plasma spacemen. But there is still limitation on whole blood detection. When applied with whole blood, the detaction time is lengthened and signals become very unstable. The modification is on schedule in the future plan.</p>
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<span class="psg_ttl">References</span>
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<p>[1] Gao, Wei, et al. "Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis." Nature 529.7587 (2016): 509.</p>
 
 
 
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Latest revision as of 00:07, 18 October 2018

Improve Part
HARDWARE  
ABSTRACT  

At the very beginning of hardware construction, all biological products and other auxiliary reagents (like Au nanoparticles and Nafion) have to immobilized on the electrode. To meet the need of large-scale manufacturing and high accuracy, we used a 2D printer to print these materials onto IDEs ( InterDigital Electrode) to modify the Au-surface. Then we assembled IDEs, amplifier, convertor and digital interface to an entire circuit. The signal from the circuit is transmitted to an iPhone through Bluetooth. Several blood samples from a qualified Hospital were collected for access our hardwares and enzyme IDEs.


Fig. 1 Work flow of our hardware


2D printer

Our 2D printer consists of a constant-flow pump, motors, an Arduino Uno microcontroller. The printer’s user interface is based on a Windows software by Steamduino which support several file formats like CAD scripts or normal pictures. Imported files will be converted to 2D routes and transmitted to the microcontroller. The speed of motors and flow rate of the "ink" are controllable in the panel. Since the space between lead feet of IDEs is about 4 mm, the printer can reach an accuracy of 3 mm. The path-programmable printer offers more possibilities for developers to design on the level of electrodes. For example, separated areas of the chip can be modified with different enzymes.

Fig. 2 Real picture of a 2D printer and its control panel
IDE (interdigital electrode) design

IDE (interdigital electrode) is composed of two interdigital electrodes with two connection tracks, on an insulative substrate. IDE is cheaper than normal electrodes and can work with low volumes of sample. The interdigitated configuration typically enhances sensitivity and detection limits.


The IDE circuit is planted on a PET (Polyethylene terephthalate) platform. And circuits itself are covered with copper, nickel and gold (in a manner from inside to surface) to enhance the conductivity. The current in side IDEs are led out through a FPC (Flexible Printed Circuit) connector which fits to the size of IDE lead feet.

First generation of IDE


Taking our 2D-printer’s precision into consideration, we designed our first generation of IDE (see Fig. 1). The part with black lines is 6×interdigital working electrodes, the green part is a counter electrode and the red part is a reference electrode. But in the first design, two interdigital electrodes in pair are linked to the same lead foot which significantly lower the space for further DIY.

Fig 3.First generation of IDE. The part with black lines is 6×interdigital working electrodes, the green part is a counter electrode and the red part is a reference electrode.
Second generation of IDE

To make it easier to print protein solution to the surface and also for more possibility in further desgin, we modified our IDEs and create the second generation of IDEs (see Fig.2). In the new design, lead feet were enlarged to 0.44 mm. Gaps in between reached to 0.48 mm to avoid short circuit. And we separated each pair of interdigital electrode to 2 independent lead feet.

Fig 4.Second generation of IDE. The part with black lines is 6×interdigital working electrodes, the green part is a counter electrode and the red part is a reference electrode.
Integration

As the chemical reaction signal is normally small (10-7-10-5 A), a circuit which reaccepts the current signal must amplify the signal to a large voltage signal for sampling in microcontroller. And due to the characters of degenerative circuit, a convertor is needed for sampling subsequently.

integrated circuit design

We connect a Transimpedance Amplifier together with a Bluetooth module an expansion on Arduino Nano microcontroller. Following figure showed our main design and workable circuit we tested. This part of hardware can amplify currents produced on IDE and the amplification result is 1×106 times depend on impedance on the amplifier.[1] [1]

Fig 5. Integrated circuit design on amplifiers and convertors.
Fig 6. Prototype on board while testing
Interface and software

We printed the "ink" containing modified enzymes on IDEs. IDEs' output feet are connected to the in-port of the second part hardware with a small current and circuits can accordingly form a voltage big enough to be sampled. An Arduino Nano microcontrollor and a blueteeth module are used to transfer data to mobile phones running the WeChat (a well-known social media app) mini-program for visualization. Cell phones receive the voltage signal and transfer them into an actual current value by algorithm, and then send processed user-readable results to the applets. This app is developed in the WeChat Platform. Some screen shoots in the app are showed below.

Fig 7. Screen shots of prototype display


The hardware implementation not only solves the need to report wet experiment results, but also is much more user friendly, especially for non-professionals.In order to verify the stability and accuracy, we conducted dozens of tests in the hospital using real blood samples and contacted the experts to evaluate the hardware. In the figure showed below, the hardware model works well on distinguish patient samples and healthy samples. And the IDE chips response very quickly within 10s to plasma spacemen. But there is still limitation on whole blood detection. When applied with whole blood, the detaction time is lengthened and signals become very unstable. The modification is on schedule in the future plan.

References

[1] Gao, Wei, et al. "Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis." Nature 529.7587 (2016): 509.