Difference between revisions of "Team:NU Kazakhstan/Description"

(Prototype team page)
 
Line 1: Line 1:
 
{{NU_Kazakhstan}}
 
{{NU_Kazakhstan}}
 
<html>
 
<html>
 +
<body>
 +
<!-- Start Banner Area -->
 +
<section class="generic-banner relative" style="background: url(http://highline.codal.kz/img/img-header-overview.JPG); background-size: cover; ">
 +
<div class="overlay overlay-bg"></div>
 +
<div class="container">
 +
<div class="row height align-items-center justify-content-center">
 +
<div class="col-lg-10">
 +
 +
<div class="col-lg-12">
 +
<div class="banner-content text-center">
 +
<h1 style="color: #fff">Overview & Background</h1>
 +
<p style="color: #fff">Nazarbaev University<br>Astana, KAZAKHSTAN</p>
 +
</div>
 +
</div>
 +
</div>
 +
</div>
 +
</div>
 +
</section>
  
 +
<section class="sample-text-area">
 +
<div class="container">
 +
<div class="container">
 +
<h3 class="text-heading">What is the problem?</h3>
 +
<p class="sample-text">
 +
Many countries in the world are rich in natural resources and are successful in energy production. However, toxic substances released during industrial processes substantially harm the environment and the ecosystem in general. Kazakhstan is not an exception, taking into account its abundant oil resources, which represent 1.8% of global oil reserves [1]. According to the Committee of Statistics of the Republic of Kazakhstan, almost 100% of the total generated waste is hazardous, while waste releases from mining and quarrying represent 16% of them [2].
 +
</p>
 +
<p class="sample-text">
 +
There are two types of oil depending on the sulfur content - sweet and sour. 0.5% is the threshold value of sulfur content by mass above which oil is identified as sour.  Sour oil is toxic, corrosive and needs to be processed to become valuable in the market. The problem of sour oil wastes is relevant not only to Kazakhstan but also to other countries that specialize in oil production. Although there currently are a few ways to refine oil wastes, most of them are economically unfriendly, selective or not efficient.
 +
</p>
 +
</div>
 +
</div>
 +
<div class="container">
 +
<div class="container">
 +
<h3 class="text-heading">What are the expectations?</h3>
 +
<p class="sample-text">
 +
Our team wants to create a more convenient and cost-effective solution to the current problem of hydrogen sulfide by applying synthetic biology. Engineered cyanobacteria are expected to neutralize hydrogen sulfide present in the oil wastewater. Sulfur can futher be used as carbon materials for fuel cells to replace the platinum electrode in the oxygen reduction reaction.
 +
</p>
 +
</div>
 +
</div>
 +
<div class="container">
 +
<div class="container">
 +
<h3 class="text-heading">What is the project based on?</h3>
 +
<p class="sample-text">
 +
The central biochemical process behind our project is photosynthesis. Certain microorganisms are flexible in switching from oxygenic photosynthesis (OP) to anoxygenic photosynthesis (AP) [3]. In our project, we genetically modify cyanobacteria (Synechococcus elongatus PCC 7942) to switch to AP, which does not produce oxygen, as its name implies, and therefore utilizes other electron donors, like hydrogen sulfide.
 +
</p>
 +
</div>
 +
</div>
 +
<div class="container">
 +
<div class="container">
 +
<h3 class="text-heading">How does it function?</h3>
 +
<p class="sample-text">
 +
An enzyme termed SQR (sulfide quinone reductase) catalyzes the initial step of AP, the oxidation of hydrogen sulfide. The reaction is coupled with the reduction of plastoquinone (PQ), which brings electrons to the Photosystem I (PSI). One of the main characteristics of AP is the Photosystem II (PSII) inhibition. The inhibition is regulated by the subunits of the PSII itself, in particular, D1 protein, which supports water oxidizing cluster of PSII. Thus, PSII gets inhibited and PSI accepts the electrons supplied by hydrogen sulfide [3]. Overall, the cell performs photosynthesis and simultaneously clears up the wastewater from hydrogen sulfide.
 +
</p>
 +
</div>
 +
</div>
 +
<div class="container">
 +
<div class="container">
 +
<h3 class="text-heading">Some safety measures</h3>
 +
<p class="sample-text">
 +
The safety system, that ensures control over transformed cyanobacteria, is chromophore-assisted light inactivation SuperNova protein. The photosensitizer protein SuperNova generates Reactive Oxygen Species under regular UV light. Phototoxic sensitivity range of the protein is 500-600 nm, which will allow it to eliminate transformed species to protect the environment from genetically modified organisms. The protein is a monomeric form of dimeric photosensitizer protein KillerRed, which is bound to the thylakoid membrane. Its monomeric structure ensures better localization in a fusion with the target protein, which makes it more convenient to use [4].
 +
</p>
 +
</div>
 +
</div>
 +
</section>
 +
<section>
 +
<div class="container">
 +
<div class="container"><div class="row"><div class="col-md-10">
 +
<h3 class="text-heading">References</h3>
 +
<p class="sample-text">
 +
<ol>
 +
<li> 1. Karatayev M, Clarke ML. (2016). A review of current energy systems and green energy potential in Kazakhstan. Renewable and Sustainable Energy Reviews, 55, 491-504. http://dx.doi.org/10.1016/j.rser.2015.10.078.</li>
 +
<li>2. Committee on Statistics of RK. (2016).  Protection of Environment and Sustainable Development in Kazakhstan 2011–2015. Astana.</li>
 +
<li>3. Grim SL, Dick GJ. (2016). Photosynthetic versatility in the genome of Geitlerinema sp. PCC 9228 (formerly Oscillatoria limnetica ‘Solar Lake’), a model anoxygenic photosynthetic cyanobacterium. Front Microbiol 7: 1546.</li>
 +
<li>4. Takemoto, K., Matsuda, T., Sakai, N., Fu, D., Noda, M., Uchiyama, S., Kotera, I., Arai, Y., Horiuchi, M., Fukui, K., Ayabe, T., Inagaki, F., Suzuki, H. and Nagai, T. (2013). SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation. Scientific Reports, 3(1).</li>
 +
</ol>
 +
</p>
 +
</div>
 +
</div>
 +
</div>
 +
</div>
 +
</section>
  
 +
<footer class="section-gap">
 +
<div class="container">
 +
<div class="row pt-60">
 +
<div class="col-lg-3 col-sm-6">
 +
<div class="single-footer-widget">
 +
<h6 class="text-uppercase mb-20">Top Menu</h6>
 +
<ul class="footer-nav">
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan">Home</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Team">Team Members</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Collaborations">Collaborations</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Human_Practices">Human Practices</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Public_Engagement">Public Engagement</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Parts">Parts Overview</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Basic_Part">Basic Part</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Composite_Part">Composite Part</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Part_Collection">Part Collection</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Safety">Safety</a></li>
 +
</ul>
 +
</div>
 +
</div>
 +
<div class="col-lg-3 col-sm-6">
 +
<div class="single-footer-widget">
 +
<h6 class="text-uppercase mb-20">Project</h6>
 +
<ul class="footer-nav">
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Description">Description</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Experiments">Experiments</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Notebook">Notebook</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/InterLab">Interlab</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Model">Model</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Results">Results</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Demonstrate">Demonstrate</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Improve">Improve</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Attributions">Attributions</a></li>
 +
</ul>
 +
</div>
 +
</div>
 +
<div class="col-lg-3 col-sm-6">
 +
<div class="single-footer-widget">
 +
<h6 class="text-uppercase mb-20">Awards</h6>
 +
<ul class="footer-nav">
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Applied_Design">Applied Design</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Entrepreneurship">Entrepreneurship</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Hardware">Hardware</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Measurement">Measurement</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Model">Model</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Plant">Plant</a></li>
 +
<li><a href="https://2018.igem.org/Team:NU_Kazakhstan/Software">Software</a></li>
 +
</ul>
 +
</div>
 +
</div>
  
<div class="column full_size">
+
<div class="col-lg-3 col-sm-6">
<h1>Description</h1>
+
<div class="single-footer-widget">
 
+
<h6 class="text-uppercase mb-20">Quick About</h6>
<p>Tell us about your project, describe what moves you and why this is something important for your team.</p>
+
<p>
 
+
SCHOOL OF SCIENCE AND TECHNOLOGY Nazarbayev University Astana, Kazakhstan
</div>
+
</p>
 
+
<p>
 
+
+7 701 221 8710 <br>
 
+
aidana.toleshova@nu.edu.kz
<div class="column two_thirds_size">
+
</p>
<h3>What should this page contain?</h3>
+
<div class="footer-social d-flex align-items-center">
<ul>
+
<a href="#"><i class="fa fa-facebook"></i></a>
<li> A clear and concise description of your project.</li>
+
<a href="#"><i class="fa fa-youtube"></i></a>
<li>A detailed explanation of why your team chose to work on this particular project.</li>
+
<a href="#"><i class="fa fa-instagram"></i></a>
<li>References and sources to document your research.</li>
+
<a href="#"><i class="fa fa-whatsapp"></i></a>
<li>Use illustrations and other visual resources to explain your project.</li>
+
<a href="#"><i class="fa fa-telegram"></i></a>
</ul>
+
</div>
</div>
+
</div>
 
+
</div>
<div class="column third_size" >
+
</div>
<div class="highlight decoration_A_full">
+
<div class="footer-bottom d-flex justify-content-between align-items-center flex-wrap">
<h3>Inspiration</h3>
+
<!-- Link back to Colorlib can't be removed. Template is licensed under CC BY 3.0. -->
<p>See how other teams have described and presented their projects: </p>
+
<p class="footer-text m-0">Copyright &copy;<script>document.write(new Date().getFullYear());</script> All rights reserved</p>
 
+
<!-- Link back to Colorlib can't be removed. Template is licensed under CC BY 3.0. -->
<ul>
+
</div>
<li><a href="https://2016.igem.org/Team:Imperial_College/Description">2016 Imperial College</a></li>
+
</div>
<li><a href="https://2016.igem.org/Team:Wageningen_UR/Description">2016 Wageningen UR</a></li>
+
</footer>
<li><a href="https://2014.igem.org/Team:UC_Davis/Project_Overview"> 2014 UC Davis</a></li>
+
<!-- End Footer Area -->
<li><a href="https://2014.igem.org/Team:SYSU-Software/Overview">2014 SYSU Software</a></li>
+
</div>
</ul>
+
</div>
+
</div>
+
 
+
 
+
 
+
 
+
<div class="column two_thirds_size" >
+
<h3>Advice on writing your Project Description</h3>
+
 
+
<p>
+
We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be concise, accurate, and unambiguous in your achievements.  
+
</p>
+
 
+
</div>
+
 
+
<div class="column third_size">
+
<h3>References</h3>
+
<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you thought about your project and what works inspired you.</p>
+
 
+
</div>
+
 
+
 
+
 
+
 
+
 
+
  
 +
<script src="http://highline.codal.kz/js/vendor/jquery-2.2.4.min.js"></script>
 +
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.11.0/umd/popper.min.js" integrity="sha384-b/U6ypiBEHpOf/4+1nzFpr53nxSS+GLCkfwBdFNTxtclqqenISfwAzpKaMNFNmj4" crossorigin="anonymous"></script>
 +
<script src="http://highline.codal.kz/js/vendor/bootstrap.min.js"></script>
 +
<script src="http://highline.codal.kz/js/jquery.ajaxchimp.min.js"></script>
 +
<script src="http://highline.codal.kz/js/owl.carousel.min.js"></script>
 +
<script src="http://highline.codal.kz/js/jquery.nice-select.min.js"></script>
 +
<script src="http://highline.codal.kz/js/jquery.magnific-popup.min.js"></script>
 +
<script src="http://highline.codal.kz/js/jquery.counterup.min.js"></script>
 +
<script src="http://highline.codal.kz/js/waypoints.min.js"></script>
 +
<script src="http://highline.codal.kz/js/main.js"></script>
 +
</body>
 
</html>
 
</html>

Revision as of 17:31, 10 October 2018

Bioremediation of Sour Crude Oil Waste using Cyanobacteria




What is the problem?

Many countries in the world are rich in natural resources and are successful in energy production. However, toxic substances released during industrial processes substantially harm the environment and the ecosystem in general. Kazakhstan is not an exception, taking into account its abundant oil resources, which represent 1.8% of global oil reserves [1]. According to the Committee of Statistics of the Republic of Kazakhstan, almost 100% of the total generated waste is hazardous, while waste releases from mining and quarrying represent 16% of them [2].

There are two types of oil depending on the sulfur content - sweet and sour. 0.5% is the threshold value of sulfur content by mass above which oil is identified as sour. Sour oil is toxic, corrosive and needs to be processed to become valuable in the market. The problem of sour oil wastes is relevant not only to Kazakhstan but also to other countries that specialize in oil production. Although there currently are a few ways to refine oil wastes, most of them are economically unfriendly, selective or not efficient.

What are the expectations?

Our team wants to create a more convenient and cost-effective solution to the current problem of hydrogen sulfide by applying synthetic biology. Engineered cyanobacteria are expected to neutralize hydrogen sulfide present in the oil wastewater. Sulfur can futher be used as carbon materials for fuel cells to replace the platinum electrode in the oxygen reduction reaction.

What is the project based on?

The central biochemical process behind our project is photosynthesis. Certain microorganisms are flexible in switching from oxygenic photosynthesis (OP) to anoxygenic photosynthesis (AP) [3]. In our project, we genetically modify cyanobacteria (Synechococcus elongatus PCC 7942) to switch to AP, which does not produce oxygen, as its name implies, and therefore utilizes other electron donors, like hydrogen sulfide.

How does it function?

An enzyme termed SQR (sulfide quinone reductase) catalyzes the initial step of AP, the oxidation of hydrogen sulfide. The reaction is coupled with the reduction of plastoquinone (PQ), which brings electrons to the Photosystem I (PSI). One of the main characteristics of AP is the Photosystem II (PSII) inhibition. The inhibition is regulated by the subunits of the PSII itself, in particular, D1 protein, which supports water oxidizing cluster of PSII. Thus, PSII gets inhibited and PSI accepts the electrons supplied by hydrogen sulfide [3]. Overall, the cell performs photosynthesis and simultaneously clears up the wastewater from hydrogen sulfide.

Some safety measures

The safety system, that ensures control over transformed cyanobacteria, is chromophore-assisted light inactivation SuperNova protein. The photosensitizer protein SuperNova generates Reactive Oxygen Species under regular UV light. Phototoxic sensitivity range of the protein is 500-600 nm, which will allow it to eliminate transformed species to protect the environment from genetically modified organisms. The protein is a monomeric form of dimeric photosensitizer protein KillerRed, which is bound to the thylakoid membrane. Its monomeric structure ensures better localization in a fusion with the target protein, which makes it more convenient to use [4].

References

  1. 1. Karatayev M, Clarke ML. (2016). A review of current energy systems and green energy potential in Kazakhstan. Renewable and Sustainable Energy Reviews, 55, 491-504. http://dx.doi.org/10.1016/j.rser.2015.10.078.
  2. 2. Committee on Statistics of RK. (2016). Protection of Environment and Sustainable Development in Kazakhstan 2011–2015. Astana.
  3. 3. Grim SL, Dick GJ. (2016). Photosynthetic versatility in the genome of Geitlerinema sp. PCC 9228 (formerly Oscillatoria limnetica ‘Solar Lake’), a model anoxygenic photosynthetic cyanobacterium. Front Microbiol 7: 1546.
  4. 4. Takemoto, K., Matsuda, T., Sakai, N., Fu, D., Noda, M., Uchiyama, S., Kotera, I., Arai, Y., Horiuchi, M., Fukui, K., Ayabe, T., Inagaki, F., Suzuki, H. and Nagai, T. (2013). SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation. Scientific Reports, 3(1).