Difference between revisions of "Team:Stanford-Brown-RISD/Parts"

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<td style="width:90%; font-size: 70%;"> Designed by Cale Lester. This composite part consists of a T7 promoter with RBS (BBa_K525998), followed by a coding region for csgA (BBa_K1583000) with a His-Tag expressed at the end, an ochre stop codon, and then a BglII cut site followed by a T7 terminator (BBa_K731721). The construct constitutively produces the amyloid-forming E.coli curlin-precursor protein csgA when restriction ligated into a backbone plasmid of choice. The his-tag allows for the protein product to be purified with standard his-tag protein purification methods. Because of the T7 promoter and RBS, for protein production this construct must be used in T7 cell lines like BL21 that produce T7 RNA polymerase. The SalI and BglII cut sites also allow for the replacement with a desired coding region after the construct is successfully in a plasmid backbone. </td>
+
<td style="width:80%; font-size: 70%;"> Designed by Cale Lester. This composite part consists of a T7 promoter with RBS (BBa_K525998), followed by a coding region for csgA (BBa_K1583000) with a His-Tag expressed at the end, an ochre stop codon, and then a BglII cut site followed by a T7 terminator (BBa_K731721). The construct constitutively produces the amyloid-forming E.coli curlin-precursor protein csgA when restriction ligated into a backbone plasmid of choice. The his-tag allows for the protein product to be purified with standard his-tag protein purification methods. Because of the T7 promoter and RBS, for protein production this construct must be used in T7 cell lines like BL21 that produce T7 RNA polymerase. The SalI and BglII cut sites also allow for the replacement with a desired coding region after the construct is successfully in a plasmid backbone. </td>
 
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<td style="width:90%; font-size: 70%;"> Designed by Cale Lester. This part contains the genetic machinery to produce a chitin binding protein that is linked with a his-tag, with a T7 promoter and TE1 terminator. </td>
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<td style="width:80%; font-size: 70%;"> Designed by Cale Lester. This part contains the genetic machinery to produce a chitin binding protein that is linked with a his-tag, with a T7 promoter and TE1 terminator. </td>
 
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<td style="width:20%"> </td>
 
<td style="width:20%"> </td>
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<td style="width:90%; font-size: 70%;"> Designed by Advait Patil. This is a version of the peptide computationally designed by Kozisek et al. (Chemistry, 2008) to bind to copper (HHTC). This metal binding domain has had amino acids replaced for specificity, and has a flexible GSGGSG linker attached to allow for spacing for proper folding of the constituent domains in any fusion proteins being created. </td>
+
<td style="width:80%; font-size: 70%;"> Designed by Advait Patil. This is a version of the peptide computationally designed by Kozisek et al. (Chemistry, 2008) to bind to copper (HHTC). This metal binding domain has had amino acids replaced for specificity, and has a flexible GSGGSG linker attached to allow for spacing for proper folding of the constituent domains in any fusion proteins being created. </td>
 
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<td style="width:20%"> </td>
 
<td style="width:20%"> </td>
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<td style="width:90%; font-size: 70%;"> Designed by Advait Patil. This is a fusion protein formed with a Chitin Binding Domain (CBD) and semi-rationally designed copper binding domain (HHTC-Re) as subunits. There are two metal binding domains, allowing for two copper atoms to be bound to each protein molecule. GSGGSG linkers were added in between the CBD and HHTC-Re subunits to spatially isolate the individual domains while still allowing for flexibility. </td>
+
<td style="width:80%; font-size: 70%;"> Designed by Advait Patil. This is a fusion protein formed with a Chitin Binding Domain (CBD) and semi-rationally designed copper binding domain (HHTC-Re) as subunits. There are two metal binding domains, allowing for two copper atoms to be bound to each protein molecule. GSGGSG linkers were added in between the CBD and HHTC-Re subunits to spatially isolate the individual domains while still allowing for flexibility.</td>
 
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<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868018"> BBa_K2868018 </a>  </td>
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<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868018"> BBa_K2868018</a>  </td>
 
<td style="width:80%"> Composite Part  HHTC_RE3x Copper Binding Expression </td>
 
<td style="width:80%"> Composite Part  HHTC_RE3x Copper Binding Expression </td>
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</tr>
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 +
<td style="width:20%"> </td>
 +
<td style="width:80%; font-size: 70%;"> Designed by Advait Patil. This is a fusion protein formed with a Chitin Binding Domain (CBD) and semi-rationally designed copper binding domain (HHTC-Re) as subunits. There are three metal binding domains, allowing for three copper atoms to be bound to each protein molecule. GSGGSG linkers were added in between the CBD and HHTC-Re subunits to spatially isolate the individual domains while still allowing for flexibility. </td>
 
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<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868019"> BBa_K2868019 </a>  </td>
 
<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868019"> BBa_K2868019 </a>  </td>
 
<td style="width:80%"> Composite Part HHTC_RE6x Copper Binding Expression </td>
 
<td style="width:80%"> Composite Part HHTC_RE6x Copper Binding Expression </td>
 +
</tr>
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<td style="width:20%"> </td>
 +
<td style="width:80%; font-size: 70%;"> Designed by Advait Patil. This is a fusion protein formed with a Chitin Binding Domain (CBD) and semi-rationally designed copper binding domain (HHTC-Re) as subunits. There are six metal binding domains, allowing for six copper atoms to be bound to each protein molecule. GSGGSG linkers were added in between the CBD and HHTC-Re subunits to spatially isolate the individual domains while still allowing for flexibility. </td>
 
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<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868021"> BBa_K2868021 </a>  </td>
 
<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868021"> BBa_K2868021 </a>  </td>
 
<td style="width:80%"> Composite Part FP151 6xhistag T7 expression </td>
 
<td style="width:80%"> Composite Part FP151 6xhistag T7 expression </td>
 +
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<td style="width:20%"> </td>
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<td style="width:80%; font-size: 70%;"> Designed by Cale Lester. An IPTG inducible T7 promoter, then medium strength RBS, then a SalI cut-site, for the mfp151 DNA sequence which has an added 6x polyhistidine tag at the end, followed by a taa stop codon, then a bglII cut-site, and finally a and a T7 terminator.</td>
 
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<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868024"> BBa_K2868024 </a>  </td>
 
<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868024"> BBa_K2868024 </a>  </td>
 
<td style="width:80%"> Composite Part Csga-CBD-6xhistag Fusion T7 expression </td>
 
<td style="width:80%"> Composite Part Csga-CBD-6xhistag Fusion T7 expression </td>
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<td style="width:20%"> </td>
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<td style="width:80%; font-size: 70%;"> Designed by Cale Lester. T7 promoter with RBS, followed by a SalI cut-site, then coding region for csgA, followed by a flexible linker, followed by the NEB chitin binding domain, which is followed by the multi-tag of Flag, lumio, and 6x polyhistidine, and a stop codon, then a BglII cut-site, and finally a T7 terminator.</td>
 
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<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868028"> BBa_K2868028 </a>  </td>
 
<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868028"> BBa_K2868028 </a>  </td>
 
<td style="width:80%"> Composite Part CBD4x T7 expression </td>
 
<td style="width:80%"> Composite Part CBD4x T7 expression </td>
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<td style="width:20%"> </td>
 +
<td style="width:80%; font-size: 70%;"> Designed by Cale Lester. T7 promoter, a salI cut-site, then a start codon then a Flag, Lumio, 6x polyhisitine tag, followed by Bacillus circulans chitin binding domain, flexible linker, S. griseus chitin binding domain, then another linker, followed by Bacillus circulans chitin binding domain, flexible linker, S. griseus chitin binding domain, stop codon, a bglII cut-site, and finally t7 terminator.</td>
 
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<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868032"> BBa_K2868032 </a>  </td>
 
<td style="width:20%"> <a href="http://parts.igem.org/Part:BBa_K2868032"> BBa_K2868032 </a>  </td>
 
<td style="width:80%"> Composite Part Tyrosinase+Co-Factor Arabinose induced Co-expression </td>
 
<td style="width:80%"> Composite Part Tyrosinase+Co-Factor Arabinose induced Co-expression </td>
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<td style="width:20%"> </td>
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<td style="width:80%; font-size: 70%;"> Designed by Cale Lester. Arabinose inducible promoter, medium RBS, his tagged tyrosinase coding, stop codon, tactag spacer, medium strength RBS, co-factor his-tagged coding region, stop codon, T7 terminator. </td>
 
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</table>
 
</table>

Revision as of 19:12, 14 October 2018

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Stanford-Brown-RISD Parts


BBa_K2868000 Composite Part T7 CsgA-6xhistag expression
Designed by Cale Lester. This composite part consists of a T7 promoter with RBS (BBa_K525998), followed by a coding region for csgA (BBa_K1583000) with a His-Tag expressed at the end, an ochre stop codon, and then a BglII cut site followed by a T7 terminator (BBa_K731721). The construct constitutively produces the amyloid-forming E.coli curlin-precursor protein csgA when restriction ligated into a backbone plasmid of choice. The his-tag allows for the protein product to be purified with standard his-tag protein purification methods. Because of the T7 promoter and RBS, for protein production this construct must be used in T7 cell lines like BL21 that produce T7 RNA polymerase. The SalI and BglII cut sites also allow for the replacement with a desired coding region after the construct is successfully in a plasmid backbone.
BBa_K2868011 Composite Part T7 CBD-6xhistag expression
Designed by Cale Lester. This part contains the genetic machinery to produce a chitin binding protein that is linked with a his-tag, with a T7 promoter and TE1 terminator.
BBa_K2868014 HHTC-Re + linker
Designed by Advait Patil. This is a version of the peptide computationally designed by Kozisek et al. (Chemistry, 2008) to bind to copper (HHTC). This metal binding domain has had amino acids replaced for specificity, and has a flexible GSGGSG linker attached to allow for spacing for proper folding of the constituent domains in any fusion proteins being created.
BBa_K2868015 Composite Part HHTC_RE2x Copper Binding Expression
Designed by Advait Patil. This is a fusion protein formed with a Chitin Binding Domain (CBD) and semi-rationally designed copper binding domain (HHTC-Re) as subunits. There are two metal binding domains, allowing for two copper atoms to be bound to each protein molecule. GSGGSG linkers were added in between the CBD and HHTC-Re subunits to spatially isolate the individual domains while still allowing for flexibility.
BBa_K2868018 Composite Part HHTC_RE3x Copper Binding Expression
Designed by Advait Patil. This is a fusion protein formed with a Chitin Binding Domain (CBD) and semi-rationally designed copper binding domain (HHTC-Re) as subunits. There are three metal binding domains, allowing for three copper atoms to be bound to each protein molecule. GSGGSG linkers were added in between the CBD and HHTC-Re subunits to spatially isolate the individual domains while still allowing for flexibility.
BBa_K2868019 Composite Part HHTC_RE6x Copper Binding Expression
Designed by Advait Patil. This is a fusion protein formed with a Chitin Binding Domain (CBD) and semi-rationally designed copper binding domain (HHTC-Re) as subunits. There are six metal binding domains, allowing for six copper atoms to be bound to each protein molecule. GSGGSG linkers were added in between the CBD and HHTC-Re subunits to spatially isolate the individual domains while still allowing for flexibility.
BBa_K2868021 Composite Part FP151 6xhistag T7 expression
Designed by Cale Lester. An IPTG inducible T7 promoter, then medium strength RBS, then a SalI cut-site, for the mfp151 DNA sequence which has an added 6x polyhistidine tag at the end, followed by a taa stop codon, then a bglII cut-site, and finally a and a T7 terminator.
BBa_K2868024 Composite Part Csga-CBD-6xhistag Fusion T7 expression
Designed by Cale Lester. T7 promoter with RBS, followed by a SalI cut-site, then coding region for csgA, followed by a flexible linker, followed by the NEB chitin binding domain, which is followed by the multi-tag of Flag, lumio, and 6x polyhistidine, and a stop codon, then a BglII cut-site, and finally a T7 terminator.
BBa_K2868028 Composite Part CBD4x T7 expression
Designed by Cale Lester. T7 promoter, a salI cut-site, then a start codon then a Flag, Lumio, 6x polyhisitine tag, followed by Bacillus circulans chitin binding domain, flexible linker, S. griseus chitin binding domain, then another linker, followed by Bacillus circulans chitin binding domain, flexible linker, S. griseus chitin binding domain, stop codon, a bglII cut-site, and finally t7 terminator.
BBa_K2868032 Composite Part Tyrosinase+Co-Factor Arabinose induced Co-expression
Designed by Cale Lester. Arabinose inducible promoter, medium RBS, his tagged tyrosinase coding, stop codon, tactag spacer, medium strength RBS, co-factor his-tagged coding region, stop codon, T7 terminator.