Difference between revisions of "Team:Uppsala/Protocol"
| Line 187: | Line 187: | ||
<h1>Worm recovery from cups</h1> | <h1>Worm recovery from cups</h1> | ||
| − | <p>Materials:<br> | + | <p><h2>Materials:</h2><br> |
<ul> | <ul> | ||
<li>Cups</li> | <li>Cups</li> | ||
| Line 205: | Line 205: | ||
<ul> | <ul> | ||
<li>The cup is filled with water (200 mL)</li> | <li>The cup is filled with water (200 mL)</li> | ||
| − | <li>One half of a petri dish is placed on top. The cup with the petri dish is then turned upside down | + | <li>One half of a petri dish is placed on top. The cup with the petri dish is then turned upside down</li> |
| − | <li>The cup is left at room temperature ON, to allow the dry material to soak water and deposit on the bottom | + | <li>The cup is left at room temperature ON, to allow the dry material to soak water and deposit on the bottom</li> |
<li>The following day the cup with the petri dish are tilted to recover the liquid, which contains the worms</li> | <li>The following day the cup with the petri dish are tilted to recover the liquid, which contains the worms</li> | ||
| − | <li>The worm solution is left in the fridge for 3 hours, to allow a complete deposit of the worms | + | <li>The worm solution is left in the fridge for 3 hours, to allow a complete deposit of the worms</li> |
| − | <li>Most of the supernatant is removed, and the worm solution can be stored | + | <li>Most of the supernatant is removed, and the worm solution can be stored</li> |
</p> | </p> | ||
</ul> | </ul> | ||
| Line 215: | Line 215: | ||
<h1>Worm purification</h1> | <h1>Worm purification</h1> | ||
| − | <p>Materials:<br> | + | <p><h2>Materials:</h2><br> |
<ul> | <ul> | ||
<li>Loose cotton</li> | <li>Loose cotton</li> | ||
| Line 225: | Line 225: | ||
<h3>Debris removal</h3> | <h3>Debris removal</h3> | ||
<ul> | <ul> | ||
| − | <li>Cotton is added to a | + | <li>Cotton is added to a Pasteur pipette to obtain a filter around 1 cm wide</li> |
<li>Some drops of physiological solution are added to each pipette, to soak the filter</li> | <li>Some drops of physiological solution are added to each pipette, to soak the filter</li> | ||
<li>One worm solution deriving from each isolation protocol is added slowly making sure it doesn't flow through</li> | <li>One worm solution deriving from each isolation protocol is added slowly making sure it doesn't flow through</li> | ||
<li>The solution is left in contact with the filter for 30 min</li> | <li>The solution is left in contact with the filter for 30 min</li> | ||
| − | <li>Around 5 mL of physiological solution are added on top of the filter, until all the liquid has run through. Lifting the pipette from the liquid in the bottom of the falcon can help in this process | + | <li>Around 5 mL of physiological solution are added on top of the filter, until all the liquid has run through. Lifting the pipette from the liquid in the bottom of the falcon can help in this process</li> |
<li>Purified worm solutions are stored at 4°C to leave the nematodes to settle. When sample is needed, supernatant is removed to concentrate the samples</li> | <li>Purified worm solutions are stored at 4°C to leave the nematodes to settle. When sample is needed, supernatant is removed to concentrate the samples</li> | ||
</ul> </p> | </ul> </p> | ||
| + | <h1>Worm sterilization</h1> | ||
| + | <h2>Materials</h2> | ||
| + | <ul> | ||
| + | <li>Bleach 2%</li> | ||
| + | <li>Sterile physiological solution (0.9% NaCl)</li> | ||
| + | </ul> | ||
| + | <h3>Procedure</h3> | ||
| + | <ul> | ||
| + | <li><Most of the supernatant the worms are found in is removed, leaving the pellet with as little liquid as possible</li> | ||
| + | <li>The physiological solution, the sample and the bleach solution are stored in ice, to maintain the cold temperature, which favours the formation of the worm pellets</li> | ||
| + | <li>Physiological solution and bleach solution (1%) are added to a final volume of 5mL</li> | ||
| + | <li>The sample is centrifuged at 2000 rpm at 4°C, for 2 min</li> | ||
| + | <li>Most of the supernatant is removed, and the pellet is resuspended in physiological solution</li> | ||
| + | <li>Steps 4 and 5 are repeated for a total of 4 times</li> | ||
| + | <li>The sample in physiological solution is stored in the fridge until needed</li> | ||
| + | <li>100 uL of each sample is incubated in 10 mL of LB in a 50 mL flask</li> | ||
| + | <li>Flask is incubated at 37 °C ON</li> | ||
| + | <li>Visual inspection of the flasks allows the determination of contamination presence</li> | ||
| + | </ul> | ||
Revision as of 14:21, 16 October 2018
Worm recovery from cups
Materials:
- Cups
- Faeces
- Physiological solution (0.9% NaCl)
- Tap water
- Around 20 g of faeces are added to a cup
- The faeces are stirred with tweezers to make the sample less compact
- The cup is incubated at 29 °C for 1 week
- The cup is filled with water (200 mL)
- One half of a petri dish is placed on top. The cup with the petri dish is then turned upside down
- The cup is left at room temperature ON, to allow the dry material to soak water and deposit on the bottom
- The following day the cup with the petri dish are tilted to recover the liquid, which contains the worms
- The worm solution is left in the fridge for 3 hours, to allow a complete deposit of the worms
- Most of the supernatant is removed, and the worm solution can be stored
- Loose cotton
- Pasteur pipettes
- 15 mL falcon tubes
- Physiological solution (0.9% NaCl)
- Cotton is added to a Pasteur pipette to obtain a filter around 1 cm wide
- Some drops of physiological solution are added to each pipette, to soak the filter
- One worm solution deriving from each isolation protocol is added slowly making sure it doesn't flow through
- The solution is left in contact with the filter for 30 min
- Around 5 mL of physiological solution are added on top of the filter, until all the liquid has run through. Lifting the pipette from the liquid in the bottom of the falcon can help in this process
- Purified worm solutions are stored at 4°C to leave the nematodes to settle. When sample is needed, supernatant is removed to concentrate the samples
- Bleach 2%
- Sterile physiological solution (0.9% NaCl)
- The physiological solution, the sample and the bleach solution are stored in ice, to maintain the cold temperature, which favours the formation of the worm pellets
- Physiological solution and bleach solution (1%) are added to a final volume of 5mL
- The sample is centrifuged at 2000 rpm at 4°C, for 2 min
- Most of the supernatant is removed, and the pellet is resuspended in physiological solution
- Steps 4 and 5 are repeated for a total of 4 times
- The sample in physiological solution is stored in the fridge until needed
- 100 uL of each sample is incubated in 10 mL of LB in a 50 mL flask
- Flask is incubated at 37 °C ON
- Visual inspection of the flasks allows the determination of contamination presence