Team:FSU/References

References

  • Ades, S., Grigorova, I. and Gross, C. (2003). Regulation of the Alternative Sigma Factor E during Initiation, Adaptation, and Shutoff of the Extracytoplasmic Heat Shock Response in Escherichia coli. Journal of Bacteriology, [online] 185(8), pp.2512-2519. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC152616/ [Accessed 16 Oct. 2018].
  • Applied DNA Sciences. (2018). Cotton Supply Chain Protection - Applied DNA Sciences. [online] Available at: http://adnas.com/cotton-supply-chain-protection/ [Accessed 13 Sep. 2018].
  • Bianchi, A. and Baneyx, F. (1999). Hyperosmotic shock induces the sigma32 and sigmaE stress regulons of Escherichia coli. Molecular Microbiology, [online] 34(5), pp.1029-1038. Available at: https://onlinelibrary.wiley.com/doi/full/10.1046/j.1365-2958.1999.01664.x [Accessed 10 Oct. 2018].
  • Booth, I. (2014). Bacterial mechanosensitive channels: progress towards an understanding of their roles in cell physiology. Current Opinion in Microbiology, 18, pp.16-22. Available at: https://www.ncbi.nlm.nih.gov/pubmed/24607989 [Accessed 10 Oct. 2018].
  • Brissette, J., Weiner, L., Ripmaster, T. and Model, P. (1991). Characterization and sequence of the Escherichia coli stress-induced psp operon. Journal of Molecular Biology, [online] 220(1), pp.35-48. Available at: https://www.ncbi.nlm.nih.gov/pubmed/1712397 [Accessed 16 Oct. 2018].
  • Brocklehurst, K., Hobman, J., Lawley, B., Blank, L., Marshall, S., Brown, N. and Morby, A. (1999). ZntR is a Zn(II)-responsive MerR-like transcriptional regulator of zntA in Escherichia coli. Molecular Microbiology, [online] 31(3), pp.893-902. Available at: http://ZntR is a Zn(II)-responsive MerR-like transcriptional regulator of zntA in Escherichia coli. [Accessed 8 Oct. 2018].
  • Chaigne-Delalande, B. and Lenardo, M. (2014). Divalent cation signaling in immune cells. Trends in Immunology, [online] 35(7), pp.332-344. Available at: https://www.sciencedirect.com/science/article/pii/S1471490614000891?via%3Dihub [Accessed 15 Oct. 2018].
  • Choi, B., Ghosh, R., Gururani, M., Shanmugam, G., Jeon, J., Kim, J., Park, S., Jeong, M., Han, K., Bae, D. and Bae, H. (2017). Positive regulatory role of sound vibration treatment in Arabidopsis thaliana against Botrytis cinerea infection. 7th ed. [ebook] Scientific Reports, pp.1-14. Available at: https://www.nature.com/articles/s41598-017-02556-9 [Accessed 16 Oct. 2018].
  • Chuanyun, D., Bochu, W., Huan, Z., Conglin, H., Chuanren, D., Wangjian, L., Toyama, Y. and Sakanishi, A. (2004). Effect of low frequency ultrasonic stimulation on the secretion of siboflavin produced by Ecemothecium AshbyiiEffect of low frequency ultrasonic stimulation on the secretion of siboflavin produced by Ecemothecium Ashbyii. 1st ed. [ebook] ELSEVIER, pp.7-10. Available at: https://www.sciencedirect.com/science/article/pii/S0927776503002662 [Accessed 16 Oct. 2018].
  • CNBC. (2018). Ex-Russian spy was poisoned by nerve agent left on his front door, police say. [online] Available at: https://www.cnbc.com/2018/03/29/ex-russian-spy-skripal-poisoned-by-nerve-agent-on-door-of-home.html [Accessed 13 Sep. 2018].
  • Davalos-Garcia, M., Conter, A., Toesca, I., Gutierrez, C. and Cam, K. (2001). Regulation of osmC Gene Expression by the Two-Component System rcsB-rcsC in Escherichia coli. Journal of Bacteriology, [online] 183(20), pp.5870-5876. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC99664/ [Accessed 16 Oct. 2018].
  • Dominguez, D. (2004). Calcium signalling in bacteria. Molecular Microbiology, [online] 54(2), pp.291-297. Available at: http://(Dominguez, 2004) [Accessed 8 Oct. 2018].
  • Ecocyc.org. (2018). Escherichia coli K-12 substr. MG1655 bamE. [online] Available at: https://ecocyc.org/gene?orgid=ECOLI&id=EG10952#tab=TU [Accessed 16 Oct. 2018].
  • Elinder, F. and rhem, P. (2003). Metal ion effects on ion channel gating. Quarterly Reviews of Biophysics, [online] 36(4), pp.373-427. Available at: https://www.cambridge.org/core/services/aop-cambridge-core/content/view/E4016B19B5711282BC53E27921AEADDC/S0033583504003932a.pdf/metal_ion_effects_on_ion_channel_gating.pdf [Accessed 15 Oct. 2018].
  • Encyclopedia Britannica. (2018). Watermark | paper. [online] Available at: https://www.britannica.com/technology/watermark [Accessed 8 Oct. 2018].
  • F C Kung, D. (2018). Metal ion content of Escherichia coli versus cell age. [online] PubMed Central (PMC). Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC233129/ [Accessed 15 Oct. 2018].
  • Gu, S., Yang, B., Wu, Y., Li, S., Liu, W., Duan, X. and Li, M. (2013). Growth and Physiological Characteristics of E. coli in Response to the Exposure of Sound Field. [ebook] Pakistan Journal of Biological Sciences, pp.969-975. Available at: https://scialert.net/abstract/?doi=pjbs.2013.969.975 [Accessed 16 Oct. 2018].
  • Gu, S., Zhang, Y. and Wu, Y. (2016). Effects of sound exposure on the growth and intracellular macromolecular synthesis of E. coli k-12. [ebook] PeerJ, pp.1-13. Available at: https://peerj.com/articles/1920/ [Accessed 16 Oct. 2018].
  • Hankamer, B., Elderkin, S., Buck, M. and Nield, J. (2003). Organization of the AAA+Adaptor Protein PspA Is an Oligomeric Ring. Journal of Biological Chemistry, 279(10), pp.8862-8866.
  • Jovanovic, G., Lloyd, L., Stumpf, M., Mayhew, A. and Buck, M. (2006). Induction and Function of the Phage Shock Protein Extracytoplasmic Stress Response inEscherichia coli. Journal of Biological Chemistry, 281(30), pp.21147-21161. Available at:http://www.jbc.org/content/281/30/21147.full [Accessed 10 Oct. 2018].
  • Haswell, E. and Verslues, P. (2015). The ongoing search for the molecular basis of plant osmosensing. The Journal of General Physiology, [online] 145(5), pp.389-394. Available at: http://jgp.rupress.org/content/early/2015/04/07/jgp.201411295/tab-figures-data [Accessed 17 Oct. 2018].
  • Jovanovic, G., Engl, C., Mayhew, A., Burrows, P. and Buck, M. (2010). Properties of the phage-shock-protein (Psp) regulatory complex that govern signal transduction and induction of the Psp response in Escherichia coli. Microbiology, [online] 156(10), pp.2920-2932. Available at: http://Properties of the phage-shock-protein (Psp) regulatory complex that govern signal transduction and induction of the Psp response in Escherichia coli. [Accessed 17 Oct. 2018].
  • Konovalova, A., Schwalm, J. and Silhavy, T. (2016). A Suppressor Mutation That Creates a Faster and More Robust σE Envelope Stress Response. Journal of Bacteriology, [online] 198(17), pp.2345-2351. Available at: https://jb.asm.org/content/198/17/2345/figures-only [Accessed 17 Oct. 2018].
  • Kothari, V., Patel, P., Joshi, C., Mishra, B., Dubey, S. and Mehta, M. (2016). Quorum sensing modulatory effect of sound stimulation on Serratia marcescens and Pseudomonas aeruginosa. [ebook] Cold Spring Harbor Laboratory. Available at: https://www.biorxiv.org/content/early/2016/09/01/072850 [Accessed 16 Oct. 2018].
  • Kumeta, M., Takahashi, D., Takeyasu, K. and Yoshimura, S. (2018). Cell type-specific suppression of mechanosensitive genes by audible sound stimulation. [ebook] PLOS, pp.1-14. Available at: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0188764 [Accessed 16 Oct. 2018].
  • Leben, K., Krese, R., Plaper, T., Franko, N., Magdevska, L., Gradisek, M., Merljak, E., Roskar, S., Jerala, N., Cerovic, K., Praznik, A. and Pusnik, Z. (2016). Team:Slovenia. [online] 2016.igem.org. Available at: https://2016.igem.org/Team:Slovenia/Mechanosensing/Mechanosensitive_channels [Accessed 15 Oct. 2018].
  • Lee Ying, J., Dayou, J. and Phin, C. (2009). Experimental Investigation on the Effects of Audible Sound to the Growth of Escherichia coli. Modern Applied Science, 3(3).
  • Lesniak, J., Barton, W. and Nikolov, D. (2003). Structural and functional features of the Escherichia coli hydroperoxide resistance protein OsmC. Protein Science, [online] 12(12), pp.2838-2843. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2366992/ [Accessed 16 Oct. 2018].
  • Levina, N. (1999). Protection of Escherichia coli cells against extreme turgor by activation of MscS and MscL mechanosensitive channels: identification of genes required for MscS activity. The EMBO Journal, [online] 18(7), pp.1730-1737. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1171259/ [Accessed 8 Oct. 2018].
  • Majdalani, N. and Gottesman, S. (2005). THE RCS PHOSPHORELAY: A Complex Signal Transduction System. Annual Review of Microbiology, [online] 59(1), pp.379-405. Available at: https://www.researchgate.net/publication/7609869_The_Rcs_Phosphorelay_A_Complex_Signal_Transduction_System [Accessed 17 Oct. 2018].
  • Malcolm, H., Blount, P. and Maurer, J. (2015). The mechanosensitive channel of small conductance (MscS) functions as a Jack-In-The Box. Biochimica et Biophysica Acta (BBA) - Biomembranes, [online] 1848(1), pp.159-166. Available at: https://www.sciencedirect.com/science/article/pii/S0005273614003575?via%3Dihub [Accessed 16 Oct. 2018].
  • Martinac, B., Adler, J. and Kung, C. (1990). Mechanosensitive ion channels of E. coli activated by amphipaths. Nature, [online] 348(6298), pp.261-263. Available at: https://www.nature.com/articles/348261a0 [Accessed 16 Oct. 2018].
  • Martinac, B., Buechner, M., Delcour, A., Adler, J. and Kung, C. (1987). Pressure-sensitive ion channel in Escherichia coli. Proceedings of the National Academy of Sciences, [online] 84(8), pp.2297-2301. Available at: http://www.pnas.org/content/84/8/2297 [Accessed 8 Oct. 2018].
  • Matsuhashi, M., Pankrushina, A., Takeuchi, S., Ohshima, H., Miyoi, H., Endoh, K., Murayama, K., Watanabe, H., Endo, S., Tobi, M., Mano, Y., Hyodo, M., Kobayashi, T., Kaneko, T., Otani, S., Yoshimura, S., Harata, A. and Sawada, T. (1998). Production of sound waves by bacterial cells and the response of bacterial cells to sound. 44th ed. [ebook] The Journal of General and Applied Microbiology, pp.49-55. Available at: https://www.jstage.jst.go.jp/article/jgam/44/1/44_1_49/_article [Accessed 16 Oct. 2018].
  • McDonald, C., Jovanovic, G., Ces, O. and Buck, M. (2015). Membrane Stored Curvature Elastic Stress Modulates Recruitment of Maintenance Proteins PspA and Vipp1. mBio, [online] 6(5). Available at: https://www.researchgate.net/publication/281522905_Membrane_Stored_Curvature_Elastic_Stress_Modulates_Recruitment_of_Maintenance_Proteins_PspA_and_Vipp1 [Accessed 16 Oct. 2018].
  • McLaughlin, E. and Labott, E. (2018). Microwaves suspected in 'sonic attacks' on US diplomats in Cuba and China, scientists say. [online] CNN. Available at: https://www.cnn.com/2018/09/02/health/cuba-china-state-department-microwaves-sonic-attacks/index.html [Accessed 13 Sep. 2018].
  • Morris, S. and Rawlinson, K. (2018). Novichok victim found substance disguised as perfume in sealed box. [online] The Guardian. Available at: https://www.theguardian.com/uk-news/2018/jul/24/novichok-victim-ill-within-15-minutes-says-partner-charlie-rowley [Accessed 8 Oct. 2018].
  • Moynihan, C. (2017). Noise as a Weapon? Police Use of Sound Cannons Questioned. [online] Nytimes.com. Available at: https://www.nytimes.com/2017/06/01/nyregion/sound-cannon-protest-lawsuit-long-range-acoustic-device.html [Accessed 8 Oct. 2018].
  • Mutalik,V. Guimaraes, J. Cambray, G. Lam, C. Christoffersen, M. Mai, Q. Tran, A Morgan Paull, Keasling, J. Arkin, A. Endy, D. (2013). Precise and reliable gene expression via standard transcription and translation initiation elements: Nature Methods, 354-360
  • Mysterious Universe. (2018). Ghost of the Machine | Mysterious Universe. [online] Available at: https://mysteriousuniverse.org/2013/06/ghost-of-the-machine-sounds-in-the-paranormal/ [Accessed 13 Sep. 2018].
  • Nedelman, M. (2018). 'Sonic attacks' in Cuba and China: What we know. [online] CNN. Available at: https://www.cnn.com/2018/05/23/health/sonic-attacks-china-havana-cuba-explainer/index.html [Accessed 8 Oct. 2018].
  • Noh, S., Lee, S., Jeong, Y., Ko, K., Rhee, B., Kim, N. and Han, J. (2015). The direct modulatory activity of zinc toward ion channels. Integrative Medicine Research, [online] 4(3), pp.142-146. Available at: https://www.sciencedirect.com/science/article/pii/S2213422015005399 [Accessed 8 Oct. 2018].
  • Outten, C., Outten, F. and O'Halloran, T. (1999). DNA Distortion Mechanism for Transcriptional Activation by ZntR, a Zn(II)-responsive MerR Homologue inEscherichia coli. Journal of Biological Chemistry, [online] 274(53), pp.37517-37524. Available at: http://www.jbc.org/content/274/53/37517.full#sec-15 [Accessed 15 Oct. 2018].
  • Peyronnet, R., Tran, D., Girault, T. and Frachisse, J. (2014). Mechanosensitive channels: feeling tension in a world under pressure. Frontiers in Plant Science, [online] 5. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4204436/ [Accessed 8 Oct. 2018].
  • Rensing, C., Mitra, B. and Rosen, B. (1997). The zntA gene of Escherichia coli encodes a Zn(II)-translocating P-type ATPase. Proceedings of the National Academy of Sciences, [online] 94(26), pp.14326-14331. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC24962/ [Accessed 16 Oct. 2018].
  • Rigel, N., Schwalm, J., Ricci, D. and Silhavy, T. (2011). BamE Modulates the Escherichia coli Beta-Barrel Assembly Machine Component BamA. Journal of Bacteriology, [online] 194(5), pp.1002-1008. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294770/ [Accessed 16 Oct. 2018].
  • Rouvière, P., De Las Peñas, A., Mecsas, J., Lu, C., Rudd, K. and Gross, C. (1995). rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli. The EMBO Journal, [online] 14(5), pp.1032-1042. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC398175/pdf/emboj00029-0184.pdf [Accessed 16 Oct. 2018].
  • Shah, A., Raval, A. and Kothari, V. (2016). Sound stimulation can influence microbial growth and production of certain key metabolites. Journal of Microbiology, Biotechnology and Food Sciences, 05(04), pp.330-334.
  • Shaobin, G., Wu, Y., Li, K., Li, S., Ma, S., Wang, Q. and Wang, R. (2010). A pilot study of the effect of audible sound on the growth of Escherichia coli. [ebook] ELSEVIER, pp.367-371. Available at: https://www.sciencedirect.com/science/article/pii/S0927776510001165?via%3Dihub [Accessed 16 Oct. 2018].
  • Sturny, R., Cam, K., Gutierrez, C. and Conter, A. (2003). NhaR and RcsB Independently Regulate the osmCp1 Promoter of Escherichia coli at Overlapping Regulatory Sites. Journal of Bacteriology, [online] 185(15), pp.4298-4304. Available at: https://jb.asm.org/content/185/15/4298#sec-9 [Accessed 8 Oct. 2018].
  • Takahashi, H., Oshima, T., Hobman, J., Doherty, N., Clayton, S., Iqbal, M., Hill, P., Tobe, T., Ogasawara, N., Kanaya, S. and Stekel, D. (2015). The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress. Journal of The Royal Society Interface, [online] 12(106), pp.20150069-20150069. Available at: http://rsif.royalsocietypublishing.org/content/12/106/20150069 [Accessed 16 Oct. 2018].
  • Toesca, I., Bouvier, J., Perard, C., Conter, A. and Gutierrez, C. (2001). The transcriptional activator NhaR is responsible for the osmotic induction of osmC p1, a promoter of the stress-inducible gene osmC in Escherichia coli. Microbiology, [online] 147(10), pp.2795-2803. Available at: http://mic.microbiologyresearch.org/content/journal/micro/10.1099/00221287-147-10-2795#tab2 [Accessed 8 Oct. 2018].
  • Tyree, K. (2018). Hunting for Watermarks. [online] Smithsonian Institution Archives. Available at: https://siarchives.si.edu/blog/hunting-watermarks [Accessed 8 Oct. 2018].
  • Wang, B., Gong, W., Li, B. and Zhu, L. (2009). Sound Wave-Induced Differentially Expression Genes in Dendrobium Candidium. 25th ed. [ebook] IFMBE, pp.1786-1788. Available at: https://link.springer.com/chapter/10.1007/978-3-642-03882-2_474 [Accessed 16 Oct. 2018].
  • Wang, W., Black, S., Edwards, M., Miller, S., Morrison, E., Bartlett, W., Dong, C., Naismith, J. and Booth, I. (2008). The Structure of an Open Form of an E. coli Mechanosensitive Channel at 3.45 A Resolution. Science, 321(5893), pp.1179-1183.
  • Weiner, L., Brissette, J. and Model, P. (1991). Stress-induced expression of the Escherichia coli phage shock protein operon is dependent on sigma 54 and modulated by positive and negative feedback mechanisms. Genes & Development, 5(10), pp.1912-1923. Available at: http://genesdev.cshlp.org/content/5/10/1912.full.pdf+html [Accessed 10 Oct. 2018].
  • Ying, J., Dayou, J. and Phin, C. (2009). Experimental Investigation on the Effects of Audible Sound to the Growth of Escherichia coli. 3rd ed. [ebook] CCSE, pp.124-127. Available at: http://ccsenet.org/journal/index.php/mas/article/view/397 [Accessed 16 Oct. 2018].
  • Fan, J., Jiashun, X., Zhenming, Y., Haiyan, W., Tianyao, X., Yuhao, X., Rongpeng, H., Xueying, Z., Shaohua, L., Cheng, Z., Jie, Y., Shiqiang, T., Dashan, G., Jin, Y., Qiao, Y., Weiduo, L., Fei, Z., Shixin, L. (2016). Team:SUSTech Shenzhen - 2016.igem.org. [online] Available at: https://2016.igem.org/Team:SUSTech_Shenzhen [Accessed 16 Oct. 2018].