Team:CIEI-BJ/InterLab

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Background

In order to meet the requirements of the Bronze Medal for iGEM, our team completed the InterLab Measurement Study this July, which aims to improve the measurement tools available to both the iGEM community and the synthetic biology community as a whole. In accordance with iGEM 2018 InterLab Study Protocol, we finished the whole process using plate readers in the labs of Beijing Science & Technology University, and finally achieved desirable results.

Our team members Zhenyu Xiong, Haolun Cheng and Zheyu Guo participated in and completed this experiment. The process and results of the experiment is as set out below.

Material

Plate reader(multifunctional enzyme marker)

Devices:

Positive control BBa_I20270
Negative control BBa_R0040
Device 1 BBa_J364000
Device 2 BBa_J364001
Device 3 BBa_J364002
Device 4 BBa_J364007
Device 5 BBa_J364008
Device 6 BBa_J364009

(Provided by the committee)

96 well plate, black with clear flat bottom

Fluorescein (provided in kit)

LUDOX CL-X (provided in kit)

Silica beads - Microsphere suspension(provided in kit)

Some conventional experimental appliance

The Problem we encountered

Interlab's protocols are detailed and easy to manipulate, but the last step dilution concentration of the bacterial solution is too low, and the lowest level of concentration in the medium is almost non-colony. We repeated the experiment several times before we got the result we expected.

Steps
Calibration

Since there are variations among different measuring instruments, we found out the standard value in our own apparatus by using three sets of unit calibration measurements: an OD600 reference point, a particle standard curve, and a fluorescein standard curve. The results we achieved are shown as below.

1)OD600 Reference point - LUDOX Protocol

Data

2)Particle Standard Curve - Microsphere

Data

3)Fluorescence standard curve - Fluorescein

Data

Cell measurement

For cell measurement, we transform eight plasmid to agar plat and then did cultivate the culture overnight. Then follow the protocol, we did series dilution and then measure the Abs 600 and fluorescence. After 6h, we measured the Abs600 and fluorescence again .

Data

Data analysis

During the process of InterLab, we were introduced to the multifunctional enzyme marker for the first time and learned how to use it, which greatly improved our experiment skills. We failed in the first two experiments due to our lack of experience but we finally achieved success in our third try, and we are really proud of it!