Difference between revisions of "Team:Tongji-Software/Attributions"
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<li>Zhichao Ma and Wei Cao was responsible for getting data from Brenda, ChEBI, DrugBank and KnowledgeBase.</li> | <li>Zhichao Ma and Wei Cao was responsible for getting data from Brenda, ChEBI, DrugBank and KnowledgeBase.</li> | ||
</ul> | </ul> | ||
| + | </br> | ||
| + | |||
<span class="h1" id="Search"> | <span class="h1" id="Search"> | ||
Search algorithm & Ranking criteria</br> | Search algorithm & Ranking criteria</br> | ||
</span> | </span> | ||
| − | + | <ul> | |
| − | < | + | <li>Xiangzhen Li did a lot of research on Graph Theoretic Algorithm and wrote code of DFS.</li> |
| − | < | + | <li> Xiaotian Yu and Wei Cao read some paper about atom conservation. Then they worked together on coding and model building.</li> |
| − | < | + | <li>Xiaotian Yu and Zhichao Ma worked on toxicity of compound and added it to ranking criteria.</li> |
| + | </ul> | ||
| + | </br> | ||
<span class="h1" id="Additional"> | <span class="h1" id="Additional"> | ||
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</span> | </span> | ||
| − | <b>FBA</b></br> | + | <b>1.FBA</b></br> |
<span class="detail" >Wei Cao and Haiyan He learned COBRA toolbox and built FBA model.</br></span> | <span class="detail" >Wei Cao and Haiyan He learned COBRA toolbox and built FBA model.</br></span> | ||
| − | <b>Microorganism recommendation</b></br> | + | <b>2.Microorganism recommendation</b></br> |
<span class="detail" >Zhichao Ma and Xiangzhen Li built and optimized microorganism recommendation model.</br></span> | <span class="detail" >Zhichao Ma and Xiangzhen Li built and optimized microorganism recommendation model.</br></span> | ||
| − | <b>SMILES Comparison </b></br> | + | <b>3.SMILES Comparison </b></br> |
<span class="detail" >Xiaotian Yu learned RDkit toolbox and added SMILES Comparison to our project.</br></span></br> | <span class="detail" >Xiaotian Yu learned RDkit toolbox and added SMILES Comparison to our project.</br></span></br> | ||
Revision as of 05:04, 3 October 2018
//小标题
ATTRIBUTIONS
What makes Alpha Ant meaningful and wonderful is those people’s great work.
Since we are from different majors, all things can be covered by everyone of us. More information about team members could be found in Team.Generally, we have three main sessions: biology logic thinking and investigation, programming and modeling, design.
It’s more like a workflow. At first, everyone is engaged in previous biology research and decide to do a topic about pathway design. Secondly, biology group try to get access to different database and deliver data to programming group. Then data processing and main part programming are followed. At last, design group can figure out how to show our software reasonably and wiki design.
Overview
Previous Research
Previous Research
- Haiyan He, Xiaotian Yu, Zhichao Ma and Wei Cao are responsible for learning synthetic biology and mining proper topic.
- Wei Cao investigated the barriers that experimenters could occur in metabolic engineering and interviewed Professor Ping Li for Tongji University for general workflow of metabolic pathway research.
- Zhichao Ma communicated with postgraduate students major in bioinformatics.
- Xiangzhen Li did some research on graph theoretic algorithm.
- Xiaotian Yu, Xiangzhen Li and Zhichao Ma were responsible for getting data from KEGG Database and data processing.
- Haiyan He and Xiaotian Yu were responsible for calculating thermodynamic data by using equilibrator.
- Zhichao Ma and Wei Cao was responsible for getting data from Brenda, ChEBI, DrugBank and KnowledgeBase.
- Xiangzhen Li did a lot of research on Graph Theoretic Algorithm and wrote code of DFS.
- Xiaotian Yu and Wei Cao read some paper about atom conservation. Then they worked together on coding and model building.
- Xiaotian Yu and Zhichao Ma worked on toxicity of compound and added it to ranking criteria.