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<p>There are millions of species of bacteria, few of which are well characterized. However, these non-model organisms perform cellular processes and are native to harsh biomes, and this makes them of great interest to researchers. Synthetic biologists take great interest in engineering such bacteria, in an attempt to harness their natural abilities. Because finding the best way to genetically modify an organism can be a laborious and resource-demanding process, we have developed a kit of modular plasmids, designed to quickly test multiple broad host range origins of replication (ORIs). To do this, we used a cloning technique called Golden Gate Assembly to build plasmids. Golden Gate Assembly uses Type IIs restriction enzymes, which allows researchers to pick the overhang each cut produces. Therefore, many parts can be assembled together at once, in a specific order. The plasmids are minimal and standardized. They include barcode sequences and reporter genes to indicate which plasmid is which.</p> | <p>There are millions of species of bacteria, few of which are well characterized. However, these non-model organisms perform cellular processes and are native to harsh biomes, and this makes them of great interest to researchers. Synthetic biologists take great interest in engineering such bacteria, in an attempt to harness their natural abilities. Because finding the best way to genetically modify an organism can be a laborious and resource-demanding process, we have developed a kit of modular plasmids, designed to quickly test multiple broad host range origins of replication (ORIs). To do this, we used a cloning technique called Golden Gate Assembly to build plasmids. Golden Gate Assembly uses Type IIs restriction enzymes, which allows researchers to pick the overhang each cut produces. Therefore, many parts can be assembled together at once, in a specific order. The plasmids are minimal and standardized. They include barcode sequences and reporter genes to indicate which plasmid is which.</p> | ||
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<p>We developed a reaction where a mixture of various plasmids with different origin of replications is transformed into a single sample of host bacteria. The colored reporters allow the researcher to quickly determine which origin of replication allow the host to replicate the plasmid. However, if the reporters are not expressed, there are included primers that sequence the barcode region of the plasmid, allowing for complete verification of which plasmid(s) worked.</p> | <p>We developed a reaction where a mixture of various plasmids with different origin of replications is transformed into a single sample of host bacteria. The colored reporters allow the researcher to quickly determine which origin of replication allow the host to replicate the plasmid. However, if the reporters are not expressed, there are included primers that sequence the barcode region of the plasmid, allowing for complete verification of which plasmid(s) worked.</p> | ||
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Revision as of 20:19, 14 October 2018
Results
There are millions of species of bacteria, few of which are well characterized. However, these non-model organisms perform cellular processes and are native to harsh biomes, and this makes them of great interest to researchers. Synthetic biologists take great interest in engineering such bacteria, in an attempt to harness their natural abilities. Because finding the best way to genetically modify an organism can be a laborious and resource-demanding process, we have developed a kit of modular plasmids, designed to quickly test multiple broad host range origins of replication (ORIs). To do this, we used a cloning technique called Golden Gate Assembly to build plasmids. Golden Gate Assembly uses Type IIs restriction enzymes, which allows researchers to pick the overhang each cut produces. Therefore, many parts can be assembled together at once, in a specific order. The plasmids are minimal and standardized. They include barcode sequences and reporter genes to indicate which plasmid is which.
We developed a reaction where a mixture of various plasmids with different origin of replications is transformed into a single sample of host bacteria. The colored reporters allow the researcher to quickly determine which origin of replication allow the host to replicate the plasmid. However, if the reporters are not expressed, there are included primers that sequence the barcode region of the plasmid, allowing for complete verification of which plasmid(s) worked.