(Created page with "{{William_and_Mary/CSS FIX}} {{William_and_Mary/CSS}} {{William_and_Mary/SOURCE}} {{William_and_Mary/NAV BAR}} <html lang="en"> <html> <head> <title>Page Title</title> <style...") |
|||
Line 19: | Line 19: | ||
− | <div style = 'padding-left: 14%; padding-bottom: 10px;font-size: 25px' ><b> | + | <div style = 'padding-left: 14%; padding-bottom: 10px;font-size: 25px' ><b>Overview</b></div> |
<div style='background: #808080; margin: 0px 14% 20px 14%; height:1px;></div> | <div style='background: #808080; margin: 0px 14% 20px 14%; height:1px;></div> | ||
<div style='padding-top: 0px;'></div> | <div style='padding-top: 0px;'></div> | ||
Line 25: | Line 25: | ||
<div style = 'padding-right: 14%; padding-left: 14%; text-indent: 50px;line-height: 25px;'> | <div style = 'padding-right: 14%; padding-left: 14%; text-indent: 50px;line-height: 25px;'> | ||
+ | Due to the inherent limitations of a chemically induced IFFL system, a new method of gene expression control was required. Such a system would ideally be to be easy to turn on and off, modular enough to work in a wide variety of systems, and have the potential to be useful in applied projects Based on these requirements we eventually settled on using an expression system whose activation was controlled by temperature. Temperature based control presents several advantages over similar systems (ex. optogenetics), namely that temperature is easy to manipulate with non specialist lab equipment, and that temperature based systems are well characterized and could potentially be useful for in vivo systems. | ||
+ | </div> | ||
+ | <div style = 'padding-right: 14%; padding-left: 14%; text-indent: 50px;line-height: 25px;'> | ||
+ | Over the course of iGEM’s history, a number of temperature controlled systems have been described and characterized, prominent examples include heat sensitive repressors as well as RNA thermometers. Based upon our research, we initially chose to design our temperature controlled IFFL based using the temperature sensitive mutant of lambda cI (ts-cI). In this system, ts-CI acts as a repressor of the lambda phage promoter R0051 at low temperatures, but is irreversibly denatured by temperatures of 37C or higher. Thus our circuits based on this system contained a module that constitutively expressed a high level of ts-CI, as well as modules that placing the production of both our reporter (mScarlet-pdt) and inhibitor (mf-Lon) under the control of R0051. When grown at 30C ts-CI would be able to repress the production of both the reporter and inhibitor, but when the temperature was increased to 37C ts-CI would be denatured, allowing the production of both. If temperature was lowered again, then more ts-CI would quickly be produced and the production of both the reporter and repressor would be repressed. | ||
+ | </div> | ||
+ | <div style='padding-top: 50px;'></div> | ||
+ | |||
+ | <center> | ||
+ | <figure style='padding-left: px;'> | ||
+ | <img src=''/> | ||
+ | <figcaption><div style='padding-left: 20%;padding-right:20%; padding-top: 15px; color: #808080; font-size: 14px;'> | ||
+ | Figure 1: Schematic of <a href='http://parts.igem.org/Part:BBa_K2680051' style='text-decoration: underline;'>BBa_K2680051</a> | ||
+ | </div></figcaption> | ||
+ | </figure> | ||
+ | </center> | ||
+ | <div style='padding-top: 50px;'></div> | ||
+ | |||
+ | <div style = 'padding-right: 14%; padding-left: 14%; text-indent: 50px;line-height: 25px;'> | ||
+ | We initially sought to validate that we could create constructs that were controlled by temperature. To that end we created a simple inducible circuit containing a constitutively expressed ts-CI and a mScarlet-I-pdt under the control of R0051. By growing these circuits at 30C before inducing them at 37C, we were able to determine that the system was indeed controlled by temperature (Figure 2a). After confirming that activation of the system was controlled by temperature, we next tested to determine if reducing the temperature of the activated circuit would cause the production of mScarlet to cease. We found that indeed the system does stop production of mScarlet-I-pdt after the temperature is reduced, with a short delay due to the need for some ts-CI to be produced (Figure 2b). | ||
</div> | </div> | ||
− | |||
+ | <center> | ||
+ | <figure style='padding-left: px;'> | ||
+ | <img src=''/> | ||
+ | <figcaption><div style='padding-left: 20%;padding-right:20%; padding-top: 15px; color: #808080; font-size: 14px;'> | ||
+ | Figure 2: Fluorescence measurements of the temperature activatable circuit BBa_K2680051 when grown at 30C and then activated by exposure to 37C (shown in red shading) for the remainder of the experiment (A) or transiently (B). Dots represent the geometric mean of 3 biological replicates and the blue shaded region represents one geometric standard deviation above and below the mean. | ||
+ | </div></figcaption> | ||
+ | </figure> | ||
+ | </center> | ||
+ | <div style='padding-top: 50px;'></div> | ||
Revision as of 21:07, 14 October 2018
Temperature Controlled Systems
Overview
Due to the inherent limitations of a chemically induced IFFL system, a new method of gene expression control was required. Such a system would ideally be to be easy to turn on and off, modular enough to work in a wide variety of systems, and have the potential to be useful in applied projects Based on these requirements we eventually settled on using an expression system whose activation was controlled by temperature. Temperature based control presents several advantages over similar systems (ex. optogenetics), namely that temperature is easy to manipulate with non specialist lab equipment, and that temperature based systems are well characterized and could potentially be useful for in vivo systems.
Over the course of iGEM’s history, a number of temperature controlled systems have been described and characterized, prominent examples include heat sensitive repressors as well as RNA thermometers. Based upon our research, we initially chose to design our temperature controlled IFFL based using the temperature sensitive mutant of lambda cI (ts-cI). In this system, ts-CI acts as a repressor of the lambda phage promoter R0051 at low temperatures, but is irreversibly denatured by temperatures of 37C or higher. Thus our circuits based on this system contained a module that constitutively expressed a high level of ts-CI, as well as modules that placing the production of both our reporter (mScarlet-pdt) and inhibitor (mf-Lon) under the control of R0051. When grown at 30C ts-CI would be able to repress the production of both the reporter and inhibitor, but when the temperature was increased to 37C ts-CI would be denatured, allowing the production of both. If temperature was lowered again, then more ts-CI would quickly be produced and the production of both the reporter and repressor would be repressed.
We initially sought to validate that we could create constructs that were controlled by temperature. To that end we created a simple inducible circuit containing a constitutively expressed ts-CI and a mScarlet-I-pdt under the control of R0051. By growing these circuits at 30C before inducing them at 37C, we were able to determine that the system was indeed controlled by temperature (Figure 2a). After confirming that activation of the system was controlled by temperature, we next tested to determine if reducing the temperature of the activated circuit would cause the production of mScarlet to cease. We found that indeed the system does stop production of mScarlet-I-pdt after the temperature is reduced, with a short delay due to the need for some ts-CI to be produced (Figure 2b).