Difference between revisions of "Team:Makerere University"

(Prototype team page)
 
 
(102 intermediate revisions by 4 users not shown)
Line 1: Line 1:
{{Makerere_University}}
 
 
<html>
 
<html>
  
 +
<head>
  
 +
<title>Home page Wiki</title>
  
 +
</head>
  
<div class="column full_size" >
+
<body>
<h1> Welcome to iGEM 2018! </h1>
+
<p>Your team has been approved and you are ready to start the iGEM season! </p>
+
  
  
<img src="http://placehold.it/1080x320/c4baba/e4dede">
+
<ul id="listlinks" >
+
  
</div>  
+
<li><a class="active" href="https://2018.igem.org/Team:Makerere_University" >HOME</a></li>
  
  
<div class="column full_size" >
+
<li><a href="https://2018.igem.org/Team:Makerere_University/team" >TEAM</a></li>
  
<h3>Before you start</h3>
 
<p> Please read the following pages:</p>
 
<ul>
 
<li>  <a href="https://2018.igem.org/Competition">Competition Hub</a> </li>
 
<li> <a href="https://2018.igem.org/Competition/Deliverables/Wiki">Wiki Requirements page</a></li>
 
<li> <a href="https://2018.igem.org/Resources/Template_Documentation">Template documentation</a></li>
 
</ul>
 
</div>
 
  
 +
<li><a href="https://2018.igem.org/Team:Makerere_University/collaborations">COLLABORATIONS</a></li>
  
<div class="clear extra_space"></div>
 
<div class="line_divider"></div>
 
<div class="clear extra_space"></div>
 
  
 +
<li><a  href="https://2018.igem.org/Team:Makerere_University/notebook">NOTEBOOK > </a>
 +
<ul class="submenus">
  
 +
<li><a  href="https://2018.igem.org/Team:Makerere_University/notebook">Lab Notebook</a></li>
 +
<li><a  href="https://2018.igem.org/Team:Makerere_University/protocols">Protocols</a></li>
 +
<li><a  href="https://2018.igem.org/Team:Makerere_University/lab results">Results</a></li>
  
<div class="column full_size" >
+
</ul>
<h3> Styling your wiki </h3>
+
<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
+
<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>  
+
  
</div>
 
  
 +
</li>
  
 +
<li><a  href="https://2018.igem.org/Team:Makerere_University/humanpractices">HUMAN PRACTICES</a></li>
  
 +
<li><a href="https://2018.igem.org/Team:Makerere_University/attributes">ATTRIBUTIONS</a></li>
  
<div class="clear extra_space"></div>
+
<li><a href="https://2018.igem.org/Team:Makerere_University/parts">PARTS</a></li>
  
 +
<li><a href="#">AWARDS  >  </a>
 +
<ul class="submenus">
 +
<li><a href="https://2018.igem.org/Team:Makerere_University/medalcriteria">MEDAL CRITERIA</a></li
 +
<li><a href="https://igem.org/2018_Judging_Form?id=2714">JUDGING FORM</a></li>
 +
</ul>
 +
</li>
  
 +
<li><a  href="https://2018.igem.org/Team:Makerere_University/safetyform">SAFETY FORM</a></li>
  
<div class="column third_size" >
+
</ul>
  
<h3> Uploading pictures and files </h3>
 
<p> You must upload any pictures and files to the iGEM 2018 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. </p>
 
  
  
<p>When you upload, set the "Destination Filename" to <b> T--YourOfficialTeamName--NameOfFile.jpg</b>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)</p>
 
  
<div class="button_link">
+
<div id="pagebanner" >  
<a href="https://2018.igem.org/Special:Upload">
+
<div id="logo" ></div>
UPLOAD FILES
+
</a>
+
</div>
+
  
 
</div>
 
</div>
 +
<br>
 +
<hr>
 +
<h1>ABSTRACT AND PROJECT DESCRIPTION</h1>
  
<div class="column third_size" >
+
<div id="pagecontent">
<h3> Wiki template information </h3>
+
<p>We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the <a href="https://2018.igem.org/Judging/Pages_for_Awards">Pages for awards</a> link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!</p>
+
  
</div>
 
  
 +
<h1>ABSTRACT</h1>
 +
Plastics are a waste product that pollutes the environment we live in and many resolutions have
 +
been implemented with little long term success. Researchers found a gram-stain-negative,
 +
aerobic, non-spore-forming, rod-shaped bacterium in 2014, known as Ideonella Sakaiensis strain
 +
201-F6 that is able to degrade Polyethylene terephthalate (PET) plastics which is a condensation
 +
polymer used in plastic that is highly resistant to biodegradation. It is industrially produced by
 +
either terephthalic acid or dimethyl terephthalate with ethylene glycol. Ideonella sakaiensis 201-
 +
F6, is able to use PET as its major energy and carbon source using two enzymes capable of
 +
hydrolyzing PET and the reaction intermediate, mono(2-hydroxyethyl) terephthalic acid. “Both
 +
enzymes are required to enzymatically convert PET efficiently into its two environmentally
 +
benign monomers terephthalic and ethylene glycol.”
 +
<br>
 +
<h2>Problem Statement.</h2><br>
 +
<img src= "https://static.igem.org/mediawiki/2018/8/8f/T--Makerere_University--plastics.jpg">
 +
<br>
 +
As you can see in the above picture ,it is estimated that 600 tonnes of plastics are disposed off in Uganda and in Kampala city particularly, vast
 +
chunks of plastics wastes are littered all over the city, clogging the sewage system and contaminating water bodies as seen below.
 +
<br>
 +
<img src="https://static.igem.org/mediawiki/2018/5/5f/T--Makerere_University--waterplastic.jpg">
 +
<br>
 +
According to
 +
the National Environmental Management Authority (NEMA)
 +
about 51% of the plastic garbage in the city is left uncollected and ends up in the drainage
 +
system/channels, wetlands, natural water courses, manholes, undeveloped plots and on roadside,
 +
according to NEMA. Plastic wastes endangers human life, animals and environmental if not well
 +
controlled and disposed of in a proper way. Pollution of plastics is less visible and therefore our
 +
policy makers do not see it a priority yet it is a silent killer. Plastics takes approximately 450
 +
years to completely decompose. Additionally, toxins from decomposed plastics are introduced
 +
into ecological systems that humans often manipulate for food.
 +
A robust sensitization program is needed to make the population aware of the dangers associated
 +
with plastic waste such as lung cancer.
 +
<br>
 +
<h2>Purpose of the project.</h2>
 +
Inspired by bacteria with an unprecedented ability, Ideonella sakaiensis, that naturally
 +
decomposes polyethylene terephthalate, we have decided to genetically modify E. coli cells to
 +
model the plastic degradation machine; we shall do so by adding the Lipase and Chlorogenate
 +
Esterase genes from Ideonella sakaiensis into E. coli bacterial cells.
 +
With the engineered E. coli bacteria, the enzymes introduced are able to express the plastic degrading abilities. This particular proposition can realistically be executed because of the
 +
minimal effort and financial advantage it presents.
 +
<br>
 +
<h1>Project description</h1>
 +
  <h2> background</h2>
 +
  <p>Since 1964, plastics production has increased 20-fold, reaching 311 million tonnes in 2014, the equivalent of more than 900 Empire State Buildings. Plastics production is expected to double again in 20 years and almost quadruple by 2050.
 +
Plastics have been intensively developed during the last 50 years</p>
 +
</br>
 +
<p> Poly(ethylene terephthalate) (PET) is one of the most widely used plastic worldwide. However, the durability of PET results in its difficulty to be degraded which leads to a global accumulation of plastic waste.
  
 +
Many solutions have been brought up in dealing with the plastic waste. Compared to the traditional chemical recycling processes, enzymatic hydrolysis of PET is presently evaluated as an environmentally friendly strategy for recycling post-consumer PET wastes. And during the last 15 years, many natural enzymes extracted from microorganisms have been found to be capable of decomposing PET.
 +
</br>
 +
</br>
 +
In recent decades, many labs around the world have proposed a variety of ways to degrade PET biologically. The most inspiring one is the biodegradation ability of a recently found bacterial, called Ideonella sakaiensis 201-F6, by Shosuke Yoshida and his colleagues from Japan, which has been studied and published in Science this March
  
<div class="column third_size" >
+
. They analyzed the degrading pathways and isolated two kinds of enzymes, PETase and MHETase. The PETase degrades PET into MHET (mono(2-hydroxyethyl) terephthalic acid) and MHETase degrades MHET into TPA (terephthalic acid) and EG (ethylene glycol).
<div class="highlight decoration_B_full">
+
</p>
<h3> Editing your wiki </h3>
+
<h3> Our project</h3>
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>  
+
<p>The project is set up to utilize the enzymatic machinery from the bacterium <b><i>Ideonella sakaiensis</i></b> as it is capable of manufacturing the enzymes of <i>PETase</i> and <i>MHETase</i> which are important in the degradation of PET. <br>
<p>Use WikiTools - Edit in the black menu bar to edit this page</p>
+
Isolated segments of the genes for the respective enzymes are transformed into the a competent <i>E. coli</i> cell so that it also obtains the plastic degrading character as in <i>Ideonella</i>.
 +
<br>
 +
<br>
 +
<i>Ideonella sakaiensis</i> is a bacteria that naturally decomposes polyethylene terephthalate, we decide to genetically modify E. coli cells to model the plastic degradation machine by adding the Lipase and Chlorogenate Esterase genes from Ideonella sakaiensis into E. coli bacterial cells. We shall obtain the two genes encoding the enzymes used by Ideonella sakaiensis, PETase and MHETase, and insert the gene into E. coli plasmids and then put the plasmids into E. coli cells. With the engineered E.coli bacteria, the enzymes produced are able to express the plastic-degrading abilities
 +
<br>
 +
<br>
 +
<b>Goal:</b> To have a clean and safe environment free of plastic pollution.
 +
<br>
 +
<br>
 +
<b>Objectives.</b>
 +
<ol>
 +
<li>To engineer a bacteria capable of degrading PET plastics.</li>
 +
<li>To sensitize the community about the danger associated with plastic wastes.</li>
 +
</ol>
  
<div class="button_link">
+
</p>
<a href="https://2018.igem.org/wiki/index.php?title=Team:Makerere_University&action=edit">  
+
<br>
EDIT PAGE
+
</a>
+
 
</div>
 
</div>
  
  
</div>
+
<div id="pagefooter">
 +
 
 +
<h1>Sponsors</h1>
 +
 
 +
<img id="mak" src="https://static.igem.org/mediawiki/2018/a/a2/T--Makerere_University--Mak_logo_dd.jpg">
 +
<img id="twist" src="https://static.igem.org/mediawiki/2018/3/3f/T--Makerere_University--Twist-Bioscience.png">
 +
<img id="promega" src= "https://static.igem.org/mediawiki/2018/3/30/T--Makerere_University--promega.gif">
 +
<img id="idt" src= "https://static.igem.org/mediawiki/2018/b/b7/T--Makerere_University--IDTmak.jpg">
 +
<img id="opentrons" src= "https://static.igem.org/mediawiki/2018/b/b1/T--Makerere_University--opentrons.jpg">
 +
 
 
</div>
 
</div>
  
  
 +
<style>
 +
#top_title{
 +
display:none;
 +
}
 +
#content{
 +
width:100%;
 +
margin:0;
 +
padding:0;
 +
background:url("https://static.igem.org/mediawiki/2018/7/7f/T--makerere_university--abstract-1869996_1920.jpg");
 +
}
 +
body{
 +
margin:0;
 +
padding:0;
 +
//background:url("https://static.igem.org/mediawiki/2018/7/7f/T--makerere_university--abstract-1869996_1920.jpg");
 +
width:100%;
 +
}
 +
#listlinks{
 +
width:100%;
 +
padding:0;
 +
margin:0;
 +
background:teal;
  
 +
}
  
  
<div class="clear extra_space"></div>
+
#listlinks li{
<div class="line_divider"></div>
+
position:relative;
<div class="clear extra_space"></div>
+
list-style:none;
 +
width:auto;
 +
font-size: 15px;
 +
display:inline-block;
 +
padding-left:15px;
 +
margin-top:10px;
 +
margin-bottom:10px;
 +
}
  
 +
#listlinks li a{
 +
display:block;
 +
text-decoration:none;
 +
background: green;
 +
color: white;
 +
}
  
  
<div class="column two_thirds_size" >
+
#listlinks li a:hover{
<h3>Tips</h3>
+
color: yellow;
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
+
}
<ul>
+
#listlinks li a.active{
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
+
background: lightblue;
<li>Be clear about what you are doing and how you plan to do this.</li>
+
}
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
+
#listlinks li .submenus{
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
+
display:none;
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
+
position:absolute;
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2018.igem.org/Calendar">iGEM 2018 calendar</a> </li>
+
margin-left:-10px;
<li>Have lots of fun! </li>
+
background:teal;
</ul>
+
padding:1px;
</div>
+
top: 20px;
 +
z-index:1;
 +
}
 +
.submenus li a{
 +
margin-top: -15px;
 +
padding-top: -20px;
 +
}
 +
#listlinks li:hover .submenus{
 +
display:block;
 +
}
  
 +
#pagebanner{
 +
position:relative;
 +
width:100%;
 +
height: 500px;
 +
background: url("https://static.igem.org/mediawiki/2018/1/11/T--Makerere_University--Makerere_University.jpg");
 +
background-size:cover;
 +
}
  
<div class="column third_size">
+
#pagecontent{
<div class="highlight decoration_A_full">
+
margin:0 5% 0 5%;
<h3>Inspiration</h3>
+
font-size:25px;
<p> You can also view other team wikis for inspiration! Here are some examples:</p>
+
background:transparent;
<ul>
+
line-height: 2;
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
+
color:white;
<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
+
}
<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
+
#pagecontent p{
<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
+
font-size:25px;
<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
+
}
<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
+
#logo{
</ul>
+
position:absolute;
</div>
+
margin :0;
</div>
+
width:150px;
 +
height:150px;
 +
background:url("https://static.igem.org/mediawiki/2018/a/ae/T--makerere_university--Igem_logo.jpg");
 +
background-size:cover;
 +
border-radius:50%;
 +
}
 +
 
 +
#pagefooter{
 +
position:relative;
 +
width:100%;
 +
height:300px;
 +
background:#262626;
 +
color: yellow;
 +
}
 +
 
 +
h1 ,h2, h3{
 +
color:white;
 +
text-align:center;
 +
}
  
 +
#mak{
 +
position:absolute;
 +
top:50px;
 +
width: 100px;
 +
height: 100px;
 +
}
 +
#idt{
 +
position:absolute;
 +
left: 0px;
 +
top:160px;
 +
}
 +
#opentrons{
 +
position:absolute;
 +
width:200px;
 +
height:100px;
 +
left: 1100px;
 +
top:15px;
 +
}
 +
#promega{
 +
position:absolute;
 +
left:1100px;
 +
top:150px;
 +
width:150px;
 +
height:150px;
 +
}
 +
#twist{
 +
position:absolute;
 +
left:500px;
 +
top:50px;
 +
}
  
 +
</style>
  
 +
</body>
  
 
</html>
 
</html>

Latest revision as of 16:38, 16 October 2018

Home page Wiki



ABSTRACT AND PROJECT DESCRIPTION

ABSTRACT

Plastics are a waste product that pollutes the environment we live in and many resolutions have been implemented with little long term success. Researchers found a gram-stain-negative, aerobic, non-spore-forming, rod-shaped bacterium in 2014, known as Ideonella Sakaiensis strain 201-F6 that is able to degrade Polyethylene terephthalate (PET) plastics which is a condensation polymer used in plastic that is highly resistant to biodegradation. It is industrially produced by either terephthalic acid or dimethyl terephthalate with ethylene glycol. Ideonella sakaiensis 201- F6, is able to use PET as its major energy and carbon source using two enzymes capable of hydrolyzing PET and the reaction intermediate, mono(2-hydroxyethyl) terephthalic acid. “Both enzymes are required to enzymatically convert PET efficiently into its two environmentally benign monomers terephthalic and ethylene glycol.”

Problem Statement.



As you can see in the above picture ,it is estimated that 600 tonnes of plastics are disposed off in Uganda and in Kampala city particularly, vast chunks of plastics wastes are littered all over the city, clogging the sewage system and contaminating water bodies as seen below.

According to the National Environmental Management Authority (NEMA) about 51% of the plastic garbage in the city is left uncollected and ends up in the drainage system/channels, wetlands, natural water courses, manholes, undeveloped plots and on roadside, according to NEMA. Plastic wastes endangers human life, animals and environmental if not well controlled and disposed of in a proper way. Pollution of plastics is less visible and therefore our policy makers do not see it a priority yet it is a silent killer. Plastics takes approximately 450 years to completely decompose. Additionally, toxins from decomposed plastics are introduced into ecological systems that humans often manipulate for food. A robust sensitization program is needed to make the population aware of the dangers associated with plastic waste such as lung cancer.

Purpose of the project.

Inspired by bacteria with an unprecedented ability, Ideonella sakaiensis, that naturally decomposes polyethylene terephthalate, we have decided to genetically modify E. coli cells to model the plastic degradation machine; we shall do so by adding the Lipase and Chlorogenate Esterase genes from Ideonella sakaiensis into E. coli bacterial cells. With the engineered E. coli bacteria, the enzymes introduced are able to express the plastic degrading abilities. This particular proposition can realistically be executed because of the minimal effort and financial advantage it presents.

Project description

background

Since 1964, plastics production has increased 20-fold, reaching 311 million tonnes in 2014, the equivalent of more than 900 Empire State Buildings. Plastics production is expected to double again in 20 years and almost quadruple by 2050. Plastics have been intensively developed during the last 50 years


Poly(ethylene terephthalate) (PET) is one of the most widely used plastic worldwide. However, the durability of PET results in its difficulty to be degraded which leads to a global accumulation of plastic waste. Many solutions have been brought up in dealing with the plastic waste. Compared to the traditional chemical recycling processes, enzymatic hydrolysis of PET is presently evaluated as an environmentally friendly strategy for recycling post-consumer PET wastes. And during the last 15 years, many natural enzymes extracted from microorganisms have been found to be capable of decomposing PET.

In recent decades, many labs around the world have proposed a variety of ways to degrade PET biologically. The most inspiring one is the biodegradation ability of a recently found bacterial, called Ideonella sakaiensis 201-F6, by Shosuke Yoshida and his colleagues from Japan, which has been studied and published in Science this March . They analyzed the degrading pathways and isolated two kinds of enzymes, PETase and MHETase. The PETase degrades PET into MHET (mono(2-hydroxyethyl) terephthalic acid) and MHETase degrades MHET into TPA (terephthalic acid) and EG (ethylene glycol).

Our project

The project is set up to utilize the enzymatic machinery from the bacterium Ideonella sakaiensis as it is capable of manufacturing the enzymes of PETase and MHETase which are important in the degradation of PET.
Isolated segments of the genes for the respective enzymes are transformed into the a competent E. coli cell so that it also obtains the plastic degrading character as in Ideonella.

Ideonella sakaiensis is a bacteria that naturally decomposes polyethylene terephthalate, we decide to genetically modify E. coli cells to model the plastic degradation machine by adding the Lipase and Chlorogenate Esterase genes from Ideonella sakaiensis into E. coli bacterial cells. We shall obtain the two genes encoding the enzymes used by Ideonella sakaiensis, PETase and MHETase, and insert the gene into E. coli plasmids and then put the plasmids into E. coli cells. With the engineered E.coli bacteria, the enzymes produced are able to express the plastic-degrading abilities

Goal: To have a clean and safe environment free of plastic pollution.

Objectives.

  1. To engineer a bacteria capable of degrading PET plastics.
  2. To sensitize the community about the danger associated with plastic wastes.