Difference between revisions of "Team:NYU Abu Dhabi/Model"
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| + | <p>The following species were used</p> | ||
| + | <table id="species-table" class="table table-hover"> | ||
| + | <thead> | ||
| + | <tr> | ||
| + | <th>Species Name</th> | ||
| + | <th>Symbol Used</th> | ||
| + | </tr> | ||
| + | </thead> | ||
| + | <tbody> | ||
| + | <tr> | ||
| + | <td>Recombinase</td> | ||
| + | <td>R</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Primer</td> | ||
| + | <td>Pr</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>DNA</td> | ||
| + | <td>D</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>DNA Polymerase</td> | ||
| + | <td>P</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Single Strand Binding Protein (SSB)</td> | ||
| + | <td>S</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>A specific binding of recombinase to a primer to form a closed complex</td> | ||
| + | <td>R:Pr</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>A specific binding of recombinase and primer to the DNA to form a closed complex</td> | ||
| + | <td>R:Pr:D</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>A specific binding of recombinase, primer, SSB protein to the DNA to form a closed complex</td> | ||
| + | <td>R:Pr:D:S</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>A specific binding of recombinase, primer, SSB protein, DNA Polymerase to the DNA to form a closed complex</td> | ||
| + | <td>R:Pr:D:S:P</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>A specific binding of primer, SSB protein, DNA Polymerase to the DNA to form a closed complex</td> | ||
| + | <td>Pr:D:S:P</td> | ||
| + | </tr> | ||
| + | |||
| + | |||
| + | <tr> | ||
| + | <td>Intermediate TetR dimer that has one specific site cleaved</td> | ||
| + | <td>\(cTetR:TetR\)</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Intermediate TetR dimer that has one TetR cleaved binded to Cruzipain</td> | ||
| + | <td>\(cTetR:TetR:Cruzipain\)</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Intermediate TetR dimer that has both specific sites cleaved</td> | ||
| + | <td>\(cTetR_{2}\)</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Intermediate TetR that has its specific site cleaved</td> | ||
| + | <td>\(cTetR\)</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>TetR dimer binded to Cruzipain</td> | ||
| + | <td>\(TetR_2:Cruzipain\)</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>TetR binded to Cruzipain</td> | ||
| + | <td>\(TetR:Cruzipain\)</td> | ||
| + | </tr> | ||
| + | </tbody> | ||
| + | </table> | ||
| + | |||
Revision as of 20:31, 17 October 2018
Mathematical Modeling
The following species were used
| Species Name | Symbol Used |
|---|---|
| Recombinase | R |
| Primer | Pr |
| DNA | D |
| DNA Polymerase | P |
| Single Strand Binding Protein (SSB) | S |
| A specific binding of recombinase to a primer to form a closed complex | R:Pr |
| A specific binding of recombinase and primer to the DNA to form a closed complex | R:Pr:D |
| A specific binding of recombinase, primer, SSB protein to the DNA to form a closed complex | R:Pr:D:S |
| A specific binding of recombinase, primer, SSB protein, DNA Polymerase to the DNA to form a closed complex | R:Pr:D:S:P |
| A specific binding of primer, SSB protein, DNA Polymerase to the DNA to form a closed complex | Pr:D:S:P |
| Intermediate TetR dimer that has one specific site cleaved | \(cTetR:TetR\) |
| Intermediate TetR dimer that has one TetR cleaved binded to Cruzipain | \(cTetR:TetR:Cruzipain\) |
| Intermediate TetR dimer that has both specific sites cleaved | \(cTetR_{2}\) |
| Intermediate TetR that has its specific site cleaved | \(cTetR\) |
| TetR dimer binded to Cruzipain | \(TetR_2:Cruzipain\) |
| TetR binded to Cruzipain | \(TetR:Cruzipain\) |