Difference between revisions of "Team:Bielefeld-CeBiTec/Results"

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This is <b>nanoFactory</b>. A combined system with the goal to clean up mining drainage and produce nano particles.
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This is <b>nanoFactory</b> - a combined system to clean up mining drainage and produce nanoparticles.
  
 
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We analyzed the awareness of Dual Use Research of Concern issues through a nationwide and an international survey.  
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We analyzed the awareness of Dual Use and Dual Use Research of Concern issues through a nationnal and an international survey.  
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Furthermore, our survey revealed missing unified definitions and insufficient education and science communication as major problems. To improve the situation and prevent regulations on free research, we spread awareness through sufficient
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Both surveys revealed the lack of unified definitions, insufficient education, and failed science communication as major problems. To improve the situation and prevent restrictions on free research, we increased awareness through improved
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science communication, appealed to the science community and provided open source media.
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science communication, appealed to the science community, and provided open source material for education of scientists.
 
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We used modeling in several project parts to improve our project. One modeling identified lethal metal ion  
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Modeling contributed to several project parts. One modeling approach identified lethal metal ion  
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concentration and led to the construction of a ROS reducing system to reduce toxicity. Furthermore,  
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concentration and led to the construction of a ROS reducing system to improve the tolerance towards metal ions. Furthermore,  
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we used the modeling to improve our hardware prototype by modeling certain process parameters.  
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we applied a sophisticated modeling approach to customize our hardware prototype by predicting various process parameters.  
 
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After we identified the lack of reliable promoter strength data as a hugh problem for our project, we tested a promoter and RBS library regarding their strength.
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Since there is a shortage of reliable information about promoter strengths, we tested a promoter and RBS library to identifiy the appropriate combination for our project.
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Furthermore, we constructed a backbone which enables the promoter strength measurement normalized to a second reporter in the backbone and could be expanded by further iGEM teams.
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Therefore, we constructed a backbone which enables reliable promoter strength measurement through normalization to a second reporter encoded in the backbone. It has not escaped our notice that this system could be applied by further iGEM teams to characterize any promoter sequence of interest.
 
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To increase the nanoparticle yield, we cloned and characterized importers for metal ions. We investigated the specifity towards their respective ions and the influence on the growth.
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To increase the nanoparticle yield, we cloned and characterized dedicated metal ions importers. We investigated the specifity towards their respective ions and the influence on the growth.
 
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We designed and cloned assembled vectors for testing and expressing siRNAs. We used our software to design suitable siRNAs and developed an improved vector set.
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We designed and assembled vectors for assessment and expression of siRNAs. We used our software to design suitable siRNAs and developed an improved vector set for experimenntal validation.
 
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We were able to enhance iron nanoparticle formation by overexpressing ferritin in <i>Escherichia coli</i>. Furthermore, we were able to use a mutated variant of the human ferritin to produce gold an silver nanoparticles.
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We were able to enhance iron nanoparticle formation by overexpressing ferritin in <i>Escherichia coli</i>. Furthermore, we developed a mutated variant of the human ferritin to produce gold and silver nanoparticles.
 
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We designed a costumized cross-flow bioreactor to filter hugh amounts of mining drainage while accumulating metal ions. Through modeling and feedback we improved our prototype and developed an improved bioreactor for our hardware.
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We designed and printed a customized cross-flow bioreactor to filter huge amounts of mining drainage while accumulating metal ions. Through iterated feedback from our modeling we improved our prototype and developed an improved bioreactor to facilite application of our system for the cleaning of mining drainage.
 
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During our project we were able to accumulate metal ions in <i>Escherichia coli</i>, while reducing the toxicity. We engineered ferritin to build enable iron, silver and gold nanoparticle formation. Furthermore, we showed that nanoparticles could be used to print conductive paths.
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During our project we were able to demonstrate accumulation of metal ions in <i>Escherichia coli</i>, while increasing the tolerance towards such ions. We engineered ferritin to enable iron, silver and gold nanoparticle formation. Furthermore, we demonstarted that nanoparticles could be used to print conductive paths.
 
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Revision as of 00:08, 18 October 2018

Results Overview
This is nanoFactory - a combined system to clean up mining drainage and produce nanoparticles.

Dual Use

We analyzed the awareness of Dual Use and Dual Use Research of Concern issues through a nationnal and an international survey. Both surveys revealed the lack of unified definitions, insufficient education, and failed science communication as major problems. To improve the situation and prevent restrictions on free research, we increased awareness through improved science communication, appealed to the science community, and provided open source material for education of scientists.

Modeling

Modeling contributed to several project parts. One modeling approach identified lethal metal ion concentration and led to the construction of a ROS reducing system to improve the tolerance towards metal ions. Furthermore, we applied a sophisticated modeling approach to customize our hardware prototype by predicting various process parameters.

Promoter Collection

Since there is a shortage of reliable information about promoter strengths, we tested a promoter and RBS library to identifiy the appropriate combination for our project. Therefore, we constructed a backbone which enables reliable promoter strength measurement through normalization to a second reporter encoded in the backbone. It has not escaped our notice that this system could be applied by further iGEM teams to characterize any promoter sequence of interest.

Toxicity

Metal ions have a toxic effect on Escherichia coli cells. We identified critical concentrations for our experiments and developed several methods to reduce ROS.

Accumulation

To increase the nanoparticle yield, we cloned and characterized dedicated metal ions importers. We investigated the specifity towards their respective ions and the influence on the growth.

Silencing

We designed and assembled vectors for assessment and expression of siRNAs. We used our software to design suitable siRNAs and developed an improved vector set for experimenntal validation.

Nanoparticles

We were able to enhance iron nanoparticle formation by overexpressing ferritin in Escherichia coli. Furthermore, we developed a mutated variant of the human ferritin to produce gold and silver nanoparticles.

Reactor

We designed and printed a customized cross-flow bioreactor to filter huge amounts of mining drainage while accumulating metal ions. Through iterated feedback from our modeling we improved our prototype and developed an improved bioreactor to facilite application of our system for the cleaning of mining drainage.

Proof of Concept

During our project we were able to demonstrate accumulation of metal ions in Escherichia coli, while increasing the tolerance towards such ions. We engineered ferritin to enable iron, silver and gold nanoparticle formation. Furthermore, we demonstarted that nanoparticles could be used to print conductive paths.