Difference between revisions of "Team:Bielefeld-CeBiTec/Parts"

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<caption><b>Table 1:>/b>All BioBricks submitted by iGEM Bielefeld CeBiTec 2018.</caption>
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<caption><b>Table 1:</b>All BioBricks submitted by iGEM Bielefeld CeBiTec 2018.</caption>
 
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             <th>Identifier</th>
 
             <th>Identifier</th>

Revision as of 02:28, 18 October 2018

Parts
The iGEM parts registry includes more than 20,000 BioBricks. The standardized form of BioBricks are the basis so all present and future iGEM teams can build on existing BioBricks to achieve their projects. This year we integrated more than 50 existing BioBricks into our project and we submitted more than 80 BioBricks. Further iGEM teams can realize their project by building on our BioBricks.
All of our submitted basic parts are listed in Table 1.
We are very proud of our favorite basic part BBa_K2638002, an impressive copper importer.
The best composite of our team BBa_K2638703 is a second generation targed vector for siRNA silencing. All other composite parts are listed in table 2.
Our part improvement is a modified human ferritin BBa_K2638999. The human ferritin was submitted by iGEM Calgary in 2013 and is an iron storage protein. We changed certain amino acid residues to add the ability to form silver and gold nanoparticles.
During our project we had to deal with gene expression, which requires a certain promoter strength. To enable a comparison of different promoter strengths, we developed a measurement vector. Furthermore, we characterized the system with our promoter-RBS library. The vector and the library are submitted as best part collection. The BioBricks are: BBa_K2638560 and BBa_K2638400 - BBa_K2638426.
Table 1:All BioBricks submitted by iGEM Bielefeld CeBiTec 2018.
Identifier Type Description Designer Length
BBa_K2638001 Coding CopC coding sequence Erika Schneider 387
BBa_K2638002 Coding CopD CDS Erika Schneider 912
BBa_K2638000 Coding Heavy Metal Transporter (hmtA) Erika Schneider 1920
BBa_K2638100 Coding alkyl hydroperoxide reductase, C22 subunit (ahpC) Johannes Ruhnau 564
BBa_K2638101 Coding alkyl hydroperoxide reductase, F52a subunit (ahpF) Johannes Ruhnau 1566
BBa_K2638103 Coding glutathione synthetase (gshB) Johannes Ruhnau 951
BBa_K2638105 Coding catalase HPI (katG) Johannes Ruhnau 2181
BBa_K2638106 Coding superoxide dismutase (sodA) Johannes Ruhnau 621
BBa_K2638120 Coding glutathione peroxidase (btuE) Johannes Ruhnau 552
BBa_K2638121 Coding glutathione reductase (gor) Johannes Ruhnau 1353
BBa_K2638150 Coding Glutathione gamma-glutamylcysteinyltransferase 1 Matthias Otto 1458
BBa_K2638151 Coding Glutathione gamma-glutamylcysteinyltransferase 1 with RBS and pTet promoter Matthias Otto 1535
BBa_K2638152 Coding Glutathione gamma-glutamylcysteinyltransferase 1 with RBS and Anderson promoter Matthias Otto 1519
BBa_K2638153 Coding Glutathione gamma-glutamylcysteinyltransferase 1 with AraBAD promoter and RBS Matthias Otto 2694
BBa_K2638200 Coding OprC (TonB dependent copper transport porin) Jakob Zubek 2127
BBa_K2638426 Reporter mRFP+ Levin Joe Klages 827
BBa_K2638601 Coding Human Ferritin Heavy Chain Copper Enhanced Binding Christoph Geske 552
BBa_K2638602 Coding Human Ferritin Heavy Chain E-Helix Removed Weaker Binding Christoph Geske 480
BBa_K2638603 Coding Human Ferritin Heavy Chain Copper Enhanced Binding and E-Helix removed Christoph Geske 474
BBa_K2638701 Generator Seamless siRNA Expression Vektor pGuide Antonin Lenzen 1780
BBa_K2638702 Generator Seamless siRNA Expression Vektor for Hfq binding siRNAs Antonin Lenzen 1865
BBa_K2638707 Reporter siRNA Target Vector with BFP and a GGGGS Linker Antonin Lenzen 2779
BBa_K2638708 Reporter siRNA Target Vector with BFP and an EAAAK Linker Antonin Lenzen 2779
BBa_K2638709 Reporter siRNA Target Vector with BFP and a cMyc Linker Antonin Lenzen 2779
BBa_K2638710 Reporter siRNA Target Vector with BFP and XP Linker Antonin Lenzen 2779
BBa_K2638711 Reporter siRNA Target Vector with AmilCP and a GGGGS Linker Antonin Lenzen 1226
BBa_K2638712 Reporter siRNA Target Vector with AmilCP and EAAAK Linker Antonin Lenzen 1226
BBa_K2638713 Reporter siRNA Target Vector with AmilCP and a cMyc Linker Antonin Lenzen 1226
BBa_K2638714 Reporter siRNA Target Vector with AmilCP and XP Linker Antonin Lenzen 1226
BBa_2638750 Regulatory Synthetic Origin of Replication A Antonin Lenzen 1
BBa_K2638751 Regulatory Synthetic Origin of Replication B Antonin Lenzen 1
BBa_K2638752 Regulatory pLac including a TetO sequence in place of the CAP binding sequence Antonin Lenzen 206
BBa_K2638753 Regulatory pLac including a Tet operator sequence behind the Lac operator Antonin Lenzen 213
BBa_K2638754 Coding E. coli Bacterioferritin Bfr Antonin Lenzen 477
BBa_K2638755 Coding Ferredoxin reductase Antonin Lenzen 747
BBa_K2638756 Coding Bacterial non-heme ferritin FtnA from Escherichia coli Antonin Lenzen 498
BBa_K2638757 Coding Ferric Uptake Regulator (Fur) from Escherichia coli K12 Antonin Lenzen 447
BBa_K2638758 Generator Seamless siRNA Expression Vektor for Omp-Utr protected siRNAs Antonin Lenzen 1897
BBa_K2638759 Generator Seamless siRNA Expression Vektor with an Hfq binding tag and OmpA 5'-UTR Antonin Lenzen 1982
BBa_K2638990 Coding Mutated Human Ferritin Heavy Chain (Backup) Vanessa Krämer 549
BBa_K2638999 Coding Mutated Human Ferritin Heavy Chain Vanessa Krämer 552