Difference between revisions of "Team:HUST-China/Modeling overview"
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<h3><strong>1. <span class="red-content">Overview </span></strong></h3> | <h3><strong>1. <span class="red-content">Overview </span></strong></h3> | ||
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This year, our job can be mainly divided into three parts: Comparison of <i>Rhodopseudomonas palustris</i> and <i>Synechocystis</i>, sort of three genes pathway in <i>Rhodopseudomonas palustris</i>, and intelligent device software. | This year, our job can be mainly divided into three parts: Comparison of <i>Rhodopseudomonas palustris</i> and <i>Synechocystis</i>, sort of three genes pathway in <i>Rhodopseudomonas palustris</i>, and intelligent device software. | ||
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<h3><strong>2. <span class="red-content">Comparison between PSB</span></strong></h3> | <h3><strong>2. <span class="red-content">Comparison between PSB</span></strong></h3> | ||
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In the past, people use <i>Synechocystis</i> to provide energy for electricity producing bacteria. Because it’s efficient and easier to control. But <i>Shewanella</i> species are heterotrophic facultative anaerobes, and produce electricity only in anaerobic environment (Justin et al.2009). So we think <i>Rhodopseudomonas palustris</i> may be better because its cycle photophosphorylation doesn’t produce oxygen. But <i>Rhodopseudomonas palustris</i> is not as efficient as <i>Synechocystis</i>. So we use computer simulation to find which is better. | In the past, people use <i>Synechocystis</i> to provide energy for electricity producing bacteria. Because it’s efficient and easier to control. But <i>Shewanella</i> species are heterotrophic facultative anaerobes, and produce electricity only in anaerobic environment (Justin et al.2009). So we think <i>Rhodopseudomonas palustris</i> may be better because its cycle photophosphorylation doesn’t produce oxygen. But <i>Rhodopseudomonas palustris</i> is not as efficient as <i>Synechocystis</i>. So we use computer simulation to find which is better. | ||
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<h3><strong>3. <span class="red-content">Sort of three genes</span></strong></h3> | <h3><strong>3. <span class="red-content">Sort of three genes</span></strong></h3> | ||
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In <i>Rhodopseudomonas palustris</i>, the sequence of genes in plasmid influences their expression ability. (Shou-Chen.2012) We have three genes to transfer. So we should find out which gene is the most important, and we sort three genes by their importance. | In <i>Rhodopseudomonas palustris</i>, the sequence of genes in plasmid influences their expression ability. (Shou-Chen.2012) We have three genes to transfer. So we should find out which gene is the most important, and we sort three genes by their importance. | ||
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<h3><strong>4. <span class="red-content">Intelligent device software</span></strong></h3> | <h3><strong>4. <span class="red-content">Intelligent device software</span></strong></h3> | ||
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Using a new multi-culture bacteria system means we should use a new fermentation strategy. So we use algorithm to know the system’s situation and decide how to control the device, letting system work more efficiently and steadily. | Using a new multi-culture bacteria system means we should use a new fermentation strategy. So we use algorithm to know the system’s situation and decide how to control the device, letting system work more efficiently and steadily. | ||
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Revision as of 20:02, 17 October 2018
Modeling overview
Reference
[1] Justin L. Burns, Thomas J. DiChristina. 2009. Anaerobic Respiration of Elemental Sulfur and Thiosulfate by Shewanella oneidensis MR-1 Requires psrA, a Homolog of the phsA Gene of Salmonella enterica Serovar Typhimurium LT2. American Society for Microbiology Journals
[2] 2.Shou-Chen Lo. 2012. Enhancement of Hydrogen Production and Carbon Fixation in Purple Nonsulfur Bacterium by Synthetic Biology. Ph.D. Dissertation
Rhodopseudomonas palustris