Difference between revisions of "Team:HUST-China/Modeling overview"
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<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/wetlab/protocols">Protocols</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/wetlab/protocols">Protocols</a></li> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/InterLab">Interlab</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/InterLab">Interlab</a></li> | ||
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<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Notebook">Notebook</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Notebook">Notebook</a></li> | ||
</ul> | </ul> | ||
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<ul class="dropdown-menu"> | <ul class="dropdown-menu"> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Modeling overview">Modeling overview</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Modeling overview">Modeling overview</a></li> | ||
| − | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/ | + | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/model_of_systems">Model of systems</a></li> |
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Sort of three genes">Sort of three genes</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Sort of three genes">Sort of three genes</a></li> | ||
| − | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/ | + | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Software">Software</a></li> |
</ul> | </ul> | ||
</li> | </li> | ||
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<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Parts Overview">Parts Overview</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Parts Overview">Parts Overview</a></li> | ||
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<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Composite part">Composite part</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Composite part">Composite part</a></li> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Part collection">Part collection</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Part collection">Part collection</a></li> | ||
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<ul class="dropdown-menu"> | <ul class="dropdown-menu"> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Human Practices">Human Practices</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Human Practices">Human Practices</a></li> | ||
| − | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/ | + | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Education_Engagement">Education&Engagement</a></li> |
</ul> | </ul> | ||
</li> | </li> | ||
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<a href="#" data-toggle="dropdown" class="dropdown-toggle waves-effect waves-dark">TEAM<b class="caret"></b></a> | <a href="#" data-toggle="dropdown" class="dropdown-toggle waves-effect waves-dark">TEAM<b class="caret"></b></a> | ||
<ul class="dropdown-menu"> | <ul class="dropdown-menu"> | ||
| − | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Team | + | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Team">Team Members</a></li> |
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Collaborations">Collaborations</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Collaborations">Collaborations</a></li> | ||
<li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Attributions">Attributions</a></li> | <li><a class="waves-effect waves-dark" href="https://2018.igem.org/Team:HUST-China/Attributions">Attributions</a></li> | ||
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<div class="col-md-12 content-text"> | <div class="col-md-12 content-text"> | ||
<div class="about-logo"> | <div class="about-logo"> | ||
| + | <a style=" text-decoration: none; color: black;" > | ||
<h3><strong>1. <span class="red-content">Overview </span></strong></h3> | <h3><strong>1. <span class="red-content">Overview </span></strong></h3> | ||
<p> | <p> | ||
This year, our job can be mainly divided into three parts: Comparison of <i>Rhodopseudomonas palustris</i> and <i>Synechocystis</i>, sort of three genes pathway in <i>Rhodopseudomonas palustris</i>, and intelligent device software. | This year, our job can be mainly divided into three parts: Comparison of <i>Rhodopseudomonas palustris</i> and <i>Synechocystis</i>, sort of three genes pathway in <i>Rhodopseudomonas palustris</i>, and intelligent device software. | ||
</p> | </p> | ||
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</div> | </div> | ||
</div> | </div> | ||
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<div class="col-md-12 content-text"> | <div class="col-md-12 content-text"> | ||
<div class="about-logo"> | <div class="about-logo"> | ||
| − | <h3><strong>2. <span class="red-content"> | + | <a style=" text-decoration: none; color: black;" > |
| + | <h3><strong>2. <span class="red-content">Model of systems</span></strong></h3> | ||
<p> | <p> | ||
In the past, people use <i>Synechocystis</i> to provide energy for electricity producing bacteria. Because it’s efficient and easier to control. But <i>Shewanella</i> species are heterotrophic facultative anaerobes, and produce electricity only in anaerobic environment (Justin et al.2009). So we think <i>Rhodopseudomonas palustris</i> may be better because its cycle photophosphorylation doesn’t produce oxygen. But <i>Rhodopseudomonas palustris</i> is not as efficient as <i>Synechocystis</i>. So we use computer simulation to find which is better. | In the past, people use <i>Synechocystis</i> to provide energy for electricity producing bacteria. Because it’s efficient and easier to control. But <i>Shewanella</i> species are heterotrophic facultative anaerobes, and produce electricity only in anaerobic environment (Justin et al.2009). So we think <i>Rhodopseudomonas palustris</i> may be better because its cycle photophosphorylation doesn’t produce oxygen. But <i>Rhodopseudomonas palustris</i> is not as efficient as <i>Synechocystis</i>. So we use computer simulation to find which is better. | ||
</p> | </p> | ||
| − | + | </a> | |
</div> | </div> | ||
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<div class="col-md-12 content-text"> | <div class="col-md-12 content-text"> | ||
<div class="about-logo"> | <div class="about-logo"> | ||
| + | <a style=" text-decoration: none; color: black;" > | ||
<h3><strong>3. <span class="red-content">Sort of three genes</span></strong></h3> | <h3><strong>3. <span class="red-content">Sort of three genes</span></strong></h3> | ||
<p> | <p> | ||
In <i>Rhodopseudomonas palustris</i>, the sequence of genes in plasmid influences their expression ability. (Shou-Chen.2012) We have three genes to transfer. So we should find out which gene is the most important, and we sort three genes by their importance. | In <i>Rhodopseudomonas palustris</i>, the sequence of genes in plasmid influences their expression ability. (Shou-Chen.2012) We have three genes to transfer. So we should find out which gene is the most important, and we sort three genes by their importance. | ||
| + | </p> | ||
| + | </a> | ||
</div> | </div> | ||
</div> | </div> | ||
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<div class="col-md-12 content-text"> | <div class="col-md-12 content-text"> | ||
<div class="about-logo"> | <div class="about-logo"> | ||
| + | <a style=" text-decoration: none; color: black;"> | ||
<h3><strong>4. <span class="red-content">Intelligent device software</span></strong></h3> | <h3><strong>4. <span class="red-content">Intelligent device software</span></strong></h3> | ||
<p> | <p> | ||
| − | Using a new multi-culture bacteria system means we should use a new | + | Using a new multi-culture bacteria system means we should use a new experiment strategy. So we build a software to capture the situation of our system and learn to decide what to do to interact our system in order to get a better electricity output. |
| + | |||
| + | . | ||
| + | </p> | ||
| + | </a> | ||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 23:52, 17 October 2018
Modeling overview
Reference
[1] Justin L. Burns, Thomas J. DiChristina. 2009. Anaerobic Respiration of Elemental Sulfur and Thiosulfate by Shewanella oneidensis MR-1 Requires psrA, a Homolog of the phsA Gene of Salmonella enterica Serovar Typhimurium LT2. American Society for Microbiology Journals
[2] 2.Shou-Chen Lo. 2012. Enhancement of Hydrogen Production and Carbon Fixation in Purple Nonsulfur Bacterium by Synthetic Biology. Ph.D. Dissertation
Rhodopseudomonas palustris