Difference between revisions of "Team:WashU StLouis/Model"

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<h3>★  ALERT! </h3>
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<img src="https://static.igem.org/mediawiki/2018/6/62/T--WashU_StLouis--modelingbanner.png" width="100%" style="top:40px;right:0px;"/>
<p>This page is used by the judges to evaluate your team for the <a href="https://2018.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2018.igem.org/Judging/Awards"> award listed below</a>. </p>
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2018.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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<p style="font-size:20px;font-family: 'Josefin Sans';font-weight:normal;">Rounding to a scale of 10<sup>-2</sup> lx it correlates to creating an amperage of 10<sup>-4</sup> mA using the silicon photodiode data sheet. This current is passed through a 10kΩ resistor to create a voltage of 5 mV, which is passed through a TI INA118 differential amplifier with a gain of 1000 to produce the maximum readable voltage of 5V using the gain equation found on their data sheet with a gain resistor of 50Ω, this creates the maximum distinction with the blank value. Since the Arduino Uno returns 1023 values the maximum expected value for fluorescence is predicted to be around 1023. The values used in these calculations are interchangeable for other proteins and as such, our modeling can be used to make our hardware applicable for other teams.</p>
  
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<p style="font-size:20px;font-family: 'Josefin Sans';font-weight:normal;">Note: The photons emitted by the LED are the limiting quantity in this situation, using 1 mL of an OD of 1 yeast culture, there are fewer photons emitted by the LED than can be emitted by the proteins.</p>
  
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<p style="font-size:20px;font-family: 'Josefin Sans';font-weight:normal;">Calculations for comparison are shown below:
<h1> Modeling</h1>
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<p>Mathematical models and computer simulations provide a great way to describe the function and operation of BioBrick Parts and Devices. Synthetic Biology is an engineering discipline, and part of engineering is simulation and modeling to determine the behavior of your design before you build it. Designing and simulating can be iterated many times in a computer before moving to the lab. This award is for teams who build a model of their system and use it to inform system design or simulate expected behavior in conjunction with experiments in the wetlab.</p>
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<h3> Gold Medal Criterion #3</h3>
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Convince the judges that your project's design and/or implementation is based on insight you have gained from modeling. This could be either a new model you develop or the implementation of a model from a previous team. You must thoroughly document your model's contribution to your project on your team's wiki, including assumptions, relevant data, model results, and a clear explanation of your model that anyone can understand.
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The model should impact your project design in a meaningful way. Modeling may include, but is not limited to, deterministic, exploratory, molecular dynamic, and stochastic models. Teams may also explore the physical modeling of a single component within a system or utilize mathematical modeling for predicting function of a more complex device.
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Please see the <a href="https://2018.igem.org/Judging/Medals"> 2018
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Medals Page</a> for more information.
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<h3>Best Model Special Prize</h3>
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To compete for the <a href="https://2018.igem.org/Judging/Awards">Best Model prize</a>, please describe your work on this page  and also fill out the description on the <a href="https://2018.igem.org/Judging/Judging_Form">judging form</a>. Please note you can compete for both the gold medal criterion #3 and the best model prize with this page.
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You must also delete the message box on the top of this page to be eligible for the Best Model Prize.
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<h3> Inspiration </h3>
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Here are a few examples from previous teams:
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<li><a href="https://2016.igem.org/Team:Manchester/Model">2016 Manchester</a></li>
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<li><a href="https://2016.igem.org/Team:TU_Delft/Model">2016 TU Delft</li>
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<li><a href="https://2014.igem.org/Team:ETH_Zurich/modeling/overview">2014 ETH Zurich</a></li>
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<li><a href="https://2014.igem.org/Team:Waterloo/Math_Book">2014 Waterloo</a></li>
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Latest revision as of 03:55, 18 October 2018

Rounding to a scale of 10-2 lx it correlates to creating an amperage of 10-4 mA using the silicon photodiode data sheet. This current is passed through a 10kΩ resistor to create a voltage of 5 mV, which is passed through a TI INA118 differential amplifier with a gain of 1000 to produce the maximum readable voltage of 5V using the gain equation found on their data sheet with a gain resistor of 50Ω, this creates the maximum distinction with the blank value. Since the Arduino Uno returns 1023 values the maximum expected value for fluorescence is predicted to be around 1023. The values used in these calculations are interchangeable for other proteins and as such, our modeling can be used to make our hardware applicable for other teams.

Note: The photons emitted by the LED are the limiting quantity in this situation, using 1 mL of an OD of 1 yeast culture, there are fewer photons emitted by the LED than can be emitted by the proteins.

Calculations for comparison are shown below: