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| | <!-- HEADER --> | | <!-- HEADER --> |
| | <header class="cf"> | | <header class="cf"> |
| − | <div id="logo"><a href="https://2018.igem.org/Team:SJTU-software"> <img src="https://raw.githubusercontent.com/sjtusoftware2018/2018iGEM_wiki/master/images/teamlogo.png" height="90"/></a></div> | + | <div id="logo"><a href="https://2018.igem.org/Team:SJTU-software /Home"> <img src="https://raw.githubusercontent.com/sjtusoftware2018/2018iGEM_wiki/master/images/teamlogo.png" height="90"/></a></div> |
| | <div id="title">SJTU-software</div> | | <div id="title">SJTU-software</div> |
| | <div id="subtitle">Metlab: a metabolic network alignment tool</div> | | <div id="subtitle">Metlab: a metabolic network alignment tool</div> |
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| | <!-- MAIN--> | | <!-- MAIN--> |
| − | <div id="main" class="cf">
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| − | <div class="headline">
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| − | HUMAN PRACTICE —— INTERCRATED AND GOLD
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| − | </div>
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| − | <!-- posts list -->
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| − | <div id="posts-list" class="cf">
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| − | <article class="cf">
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| − | <div class="entry-title">
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| − | <!-- <div class="meta">April 7 2018</div> -->
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| − | <div class="post-heading" id="ExpertInterview">Expert Interview</div>
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| − | </div>
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| − | <div class="excerpt">
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| − | We discussed with different disciplines and fields scholars, their views inspired us a lot. Interviewing experts greatly advanced our project.
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| − | </div>
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| − | <div class="expert_name" id="FT">Prof. Fei Tao</div>
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| − | <div class="subtitle">School of Life Sciences & Biotechnology</div>
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| − | <div class="subtitle">Shanghai Jiao Tong University</div>
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| − |
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| − | <div id="FeiTao">
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| − | </div>
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| − | <div class="member_info">
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| − | <blockquote>
| |
| − | Dr. Tao is now an associate professor of SJTU. He has been engaged in the research of microbial synthetic biology since he got the doctoral degree. He mainly focuses on developing efficient cell factories and advanced biocatalytic technology based on the concept of synthetic biology.
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| − | </blockquote>
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| − | </div>
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| − | </div>
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| − | <div class="excerpt">
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| − | Our interview concentrated on the topic “Application of metabolic network alignment tool in the laboratory”. Dr. Tao told us design of metabolic networks in synthetic biology focus on these aspects: 1.Yield; 2. Efficiency(in A -> B, concentration of B/A); 3. Period. Then we briefly introduced the idea of our software (a metabolic network alignment tool). Dr. Tao was greatly interest in the tool. He also analyzed a number of factors that lead to the difficulty of metabolic network alignment. How to evaluate similarity of two metabolic networks? How to grade the result of alignment? How to evaluate similarity of different compound…… His opinion made us have a deeper understanding of how make our software more practical and functional in the laboratory.
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| − | </div>
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| − |
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| − | <div class="expert_name" id="DF">Prof. Daniel Figeys</div>
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| − | <div class="subtitle">Department of Biochemistry, Microbiology and Immunology</div>
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| − | <div class="subtitle">University of Ottawa</div>
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| − |
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| − | <div id="DanielFigeys">
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| − | <div class="photo">
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| − | <img src="https://raw.githubusercontent.com/sjtusoftware2018/2018iGEM_wiki/master/images/HP/DanielFigeys.jpg" style="display: inline;">
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| − | </div>
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| − | <div class="member_info">
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| − | <blockquote>
| |
| − | Daniel Figeys is a Professor and the Chair of the Department of Biochemistry, Microbiology and Immunology (BMI) and cross-appointed in the Department of Chemistry and Biomolecular Sciences at the University of Ottawa. He is also a Canada Research Chair in Proteomics and Systems Biology. His expertise is in the development of proteomics and systems biology and more recently in metaproteomics for microbial community analysis.
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| − | </blockquote>
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| − | </div>
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| − | </div>
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| − | <div class="excerpt">
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| − | In Prof. Daniel Figeys’s Lab, they have developed a advanced bioinformatics software “iMetaLab”. Their project is originally designed for human/mouse gut metaproteomics protein identification and quantification, rooted from the MetaProIQ workflow. Upon the rising request, they wrap up the workflow into a desktop standalone version, with taxon analysis module built in. In the meantime, they have been working on some meta-function annotation and enrichment analysis, as well as some data visualization modules. Then they realize that it would be good to wrap up all related functions and share them to the community. They aim to make iMetaLab a free and one-stop toolset for gut metaproteomics, with increasing amount of tools under development. This interview inspired us how to make our software “Metlab: a metabolic network alignment tool” more user-friendly and complete. The process of their software development enlightened us to make “Metlab” a functional toolset with many tools related metabolic network.
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| − | </div>
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| − | <div class="entry-title">
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| − | <div class="meta">Jan 23 by <a href="#" class="author">Ansimuz</a></div>
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| − | <a href="single.html" class="post-heading" >LOREM IPSUM DOLOR</a>
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| − | Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Vestibulum tortor quam, feugiat vitae, ultricies eget, tempor sit amet, ante. Donec eu libero sit amet quam egestas semper. Aenean ultricies mi vitae est. Mauris placerat eleifend leo. Quisque sit amet est et sapien ullamcorper pharetra.
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| − | <div class="entry-title">
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| − | <div class="meta">Jan 23 by <a href="#" class="author">Ansimuz</a></div>
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| − | <a href="single.html" class="post-heading" >LOREM IPSUM DOLOR</a>
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| − | Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Vestibulum tortor quam, feugiat vitae, ultricies eget, tempor sit amet, ante. Donec eu libero sit amet quam egestas semper. Aenean ultricies mi vitae est. Mauris placerat eleifend leo. Quisque sit amet est et sapien ullamcorper pharetra.
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| − | <div class="entry-title">
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| − | <div class="meta">Jan 23 by <a href="#" class="author">Ansimuz</a></div>
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| − | <a href="single.html" class="post-heading" >LOREM IPSUM DOLOR</a>
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| − | Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Vestibulum tortor quam, feugiat vitae, ultricies eget, tempor sit amet, ante. Donec eu libero sit amet quam egestas semper. Aenean ultricies mi vitae est. Mauris placerat eleifend leo. Quisque sit amet est et sapien ullamcorper pharetra.
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| − | </div>
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| − | <!--ENDS page-navigation -->
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| − | <!-- ENDS post list -->
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| − | <ul>
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| − | <h4 class="heading"><a href="#ExpertInterview" ></a>Expert Interview</h4>
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| − | <ul>
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| − | <li class="cat-item"><a href="#FT" >Prof. Fei Tao</a></li>
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| − | <li class="cat-item"><a href="#DF" >Prof. Daniel Figeys</a></li>
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| − | <li class="cat-item"><a href="#" >February 2012</a></li>
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| − | <li class="cat-item"><a href="#" >January 2012</a></li>
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| − | <a href="#">Pellentesque habitant morbi senectus </a><span class="meta"> Mar 12 <a href="#" >By ansimuz</a></span>
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