Difference between revisions of "Team:BIT-China/Results"

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<h1>Results</h1>
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<p>Here you can describe the results of your project and your future plans. </p>
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</div>
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<h3>What should this page contain?</h3>
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        p:hover {
<ul>
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            border-style: transparent !important;
<li> Clearly and objectively describe the results of your work.</li>
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        }
<li> Future plans for the project. </li>
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    </style>
<li> Considerations for replicating the experiments. </li>
+
</ul>
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</div>
+
  
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    <link rel="stylesheet" href="https://2018.igem.org/Template:BIT-China/css/common-style?action=raw&amp;ctype=text/css">
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    <link rel="stylesheet" href="https://2018.igem.org/Template:BIT-China/css/experiment-common-style?action=raw&amp;ctype=text/css">
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</head>
  
<div class="column two_thirds_size" >
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<body>
<h3>Describe what your results mean </h3>
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<ul>
+
<li> Interpretation of the results obtained during your project. Don't just show a plot/figure/graph/other, tell us what you think the data means. This is an important part of your project that the judges will look for. </li>
+
<li> Show data, but remember all measurement and characterization data must be on part pages in the Registry. </li>
+
<li> Consider including an analysis summary section to discuss what your results mean. Judges like to read what you think your data means, beyond all the data you have acquired during your project. </li>
+
</ul>
+
</div>
+
  
 +
    <ul id="left-nav">
 +
        <li>
 +
            <a>PROJECT</a>
 +
            <ul>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Background">Background</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Description">Description</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Design">Idea & Design</a></li>
 +
            </ul>
 +
        </li>
  
<div class="clear extra_space"></div>
+
        <li>
 +
            <a>EXPERIMENTS</a>
 +
            <ul>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/ExperimentsRegulator">Regulator</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/ExperimentsFeedback">Feedback</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/ExperimentsOutput">Output</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Results">Results</a></li>
 +
            </ul>
 +
        </li>
  
 +
        <li>
 +
            <a>MODELING</a>
 +
            <ul>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Model">Overview</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/FluorescentProbesModel">Fluorescent Probe Model </a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/H2O2DecompositionModel">H<sub>2</sub>O<sub>2</sub>
 +
                        Decomposition Model</a></li>
  
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/roGFP2-Orp1MichaelisEquationModel">roGFP2-Orp1
 +
                        Michaelis equation Model</a></li>
 +
            </ul>
 +
        </li>
  
<div class="column two_thirds_size" >
+
        <li>
<h3> Project Achievements </h3>
+
            <a>HUMAN PRACTICES</a>
 +
            <ul>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/HPOverview">Overview</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Human_Practices">Integrated Human Practices</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Public_Engagement">Education & Public Engagement</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Collaborations">Collaborations</a></li>
 +
            </ul>
 +
        </li>
  
<p>You can also include a list of bullet points (and links) of the successes and failures you have had over your summer. It is a quick reference page for the judges to see what you achieved during your summer.</p>
+
        <li>
 +
            <a>NOTEBOOK</a>
 +
            <ul>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Notebook">Lab Book</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Protocols">Methodology / Protocols</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Equipment">Material & Equipment</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/InterLab">Measurement / InterLab</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Safety">Safety</a></li>
 +
            </ul>
 +
        </li>
  
<ul>
+
        <li>
<li>A list of linked bullet points of the successful results during your project</li>
+
            <a>ACHIEVEMENTS</a>
<li>A list of linked bullet points of the unsuccessful results during your project. This is about being scientifically honest. If you worked on an area for a long time with no success, tell us so we know where you put your effort.</li>
+
            <ul>
</ul>
+
                <li><a href="https://2018.igem.org/Team:BIT-China/JudgingForm">Judging Form</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Parts">Parts</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Improve">Improve</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Applied_Design">Applied Design</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Demonstrate">Demonstrate</a></li>
 +
            </ul>
 +
        </li>
  
</div>
+
        <li>
 +
            <a>TEAM</a>
 +
            <ul>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Team">Members</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Attributions">Attributions</a></li>
 +
                <li><a href="https://2018.igem.org/Team:BIT-China/Gallery">Gallery</a></li>
 +
            </ul>
 +
        </li>
 +
    </ul>
  
 +
    <a href="https://2018.igem.org/Team:BIT-China"><img id="imgA" class="imgA-new-pos" src="https://static.igem.org/mediawiki/2018/4/46/T--BIT-China--iGEM2018-A_img.png" /></a>
 +
    <!-- end -->
  
 +
    <div class="EXP-white-head"></div>
  
<div class="column third_size" >
+
    <div class="EXP-title">
<div class="highlight decoration_A_full">
+
        <a class="EXP-title-1" style="z-index:4;border-bottom-style: solid;text-decoration: none;color: #131313;">Results</a>
<h3>Inspiration</h3>
+
    </div>
<p>See how other teams presented their results.</p>
+
<ul>
+
<li><a href="https://2014.igem.org/Team:TU_Darmstadt/Results/Pathway">2014 TU Darmstadt </a></li>
+
<li><a href="https://2014.igem.org/Team:Imperial/Results">2014 Imperial </a></li>
+
<li><a href="https://2014.igem.org/Team:Paris_Bettencourt/Results">2014 Paris Bettencourt </a></li>
+
</ul>
+
</div>
+
</div>
+
  
 +
    <div id="REG" class="EXP-content-container" style="z-index: 1;margin-top:calc(25vh - 30px);">
 +
        <div id="REG0" class="cd-section">
 +
            <div class="EXP-title-2 EXP-margin-Title2Up">
 +
                <a style="text-decoration: none;color: #131313;">Final Test</a>
 +
            </div>
  
 +
            <div class="EXP-content-all">
 +
                <div class="EXP-title-3">
 +
                    <a>Verify the function of monitoring antioxidants in real time</a>
 +
                </div>
 +
                <div class="EXP-content">
 +
                    <p class="EXP-content-p">
 +
                        Our engineered yeast should finally have the function of monitoring antioxidants in real time.
 +
                        To demonstrate this, we integrated the two subsystems together into ∆yca1 yeast and had series
 +
                        of tests on it, in which the increasing of ROS in yeast can be effectively captured by our
 +
                        roGFP2-Orp1 protein.
 +
                    </p>
  
 +
                    <p class="EXP-content-p">
 +
                        In order to regulate endogenous ROS, we replaced yeast endogenous YNO1 promotor with a
 +
                        galactose-inducible promotor, GAL1-GAL10. We then constructed the plasmid
 +
                        pESC-TEF1p-roGFP2-Orp1-CYC1t, a shuttle vector marked with trp1. Cellular redox status were
 +
                        monitored by measuring the fluorescence ratio at 488 nm (reduced state) and 405 nm (oxidized
 +
                        state). Cells were cultured in SD medium supplemented with 1% galactose at 30℃, during which
 +
                        GAL1-GAL10 promotor was induced when galactose added. It suggests that overexpression of yno1
 +
                        gene will increase cells ROS level and decline the fluorescence ratio at 488 nm and 405 nm,
 +
                        which means there are more ROS in our modified strain.
 +
                    </p>
  
 +
                    <p class="EXP-content-p">
 +
                        As the results showing, our output subsystem can reflect the accumulation of endogenous ROS
 +
                        caused by regulator subsystem.
 +
                    </p>
 +
 +
                    <figure class="EXP-Fig EXP-margin-toContentP">
 +
                        <img src="https://static.igem.org/mediawiki/2018/4/4d/T--BIT-China--ResultFig1.png">
 +
                        <figcaption>Fig.1 Intracellular ROS accumulation.</figcaption>
 +
                    </figure>
 +
 +
                    <p class="EXP-content-p">
 +
                        The red curve indicates the fluorescence ratio at 488 nm (reduced state) and 405 nm (oxidized
 +
                        state) of engineered yeast which overexpressed Yno1 and constructed the plasmid
 +
                        pESC-TEF1p-roGFP2-Orp1-CYC1t. And the blue curve indicates the fluorescence ratio at 488 nm
 +
                        (reduced state) and 405 nm (oxidized state) of engineered yeast which only overexpressed Yno1.
 +
                        The red curve decline over time but not the blue one, which means roGFP2-Orp1 protein is able
 +
                        to show the accumulation of ROS in our yeast.
 +
                    </p>
 +
 +
                    <p class="EXP-content-p">
 +
                        Since we have proved the feasibility that the antioxidative ability of antioxidant can be
 +
                        measured by fluorescence probes. We can easily set up the relationship between our system and
 +
                        real antioxidative ability of antioxidant.
 +
                    </p>
 +
                </div>
 +
 +
                <div class="EXP-title-3">
 +
                    <a>Detect antioxidants by engineering strain</a>
 +
                </div>
 +
 +
                <div class="EXP-content">
 +
                    <p class="EXP-content-p">
 +
                        After the whole system construction, we need to test the function of our system and then
 +
                        evaluate the effect of antioxidants through our system.
 +
                    </p>
 +
 +
                    <p class="EXP-content-p">
 +
                        To detect the antioxidant capacity of antioxidants, we have selected three antioxidants,
 +
                        Vitamin C, Quercetin and Catechol, as our samples, and cultured engineered strain
 +
                        (<i>Δyca1-yno1-roGFP2-Orp1</i>) until the period with high ROS accumulation (24-36 h). Then the
 +
                        antioxidants were added into yeast culture and incubated for 30 minutes. The control group was
 +
                        treated with aseptic water and ethanol. The fluorescence intensity ratio (I488/I408 or
 +
                        I405/I488) of the reduction peak (488nm) and oxidation peak (405nm) was measured by Microplate
 +
                        Reader, and the antioxidant activity of antioxidants was characterized by that ratio change
 +
                        rate. And the emission wavelength is 510nm. The results are showed in Fig. 2.
 +
                    </p>
 +
 +
                    <figure class="EXP-Fig EXP-margin-toContentP">
 +
                        <img src="https://static.igem.org/mediawiki/2018/8/80/T--BIT-China--ResultFig2.png">
 +
                        <figcaption>Fig.2 Detect the Antioxidant Capability of Antioxidants (I405/I488)<br>Low
 +
                            fluorescence ratio (I488/405) means low intracellular ROS level.</figcaption>
 +
                    </figure>
 +
 +
                    <figure class="EXP-Fig EXP-margin-toContentP">
 +
                        <img src="https://static.igem.org/mediawiki/2018/8/82/T--BIT-China--ResultFig3.png">
 +
                        <figcaption>Fig.3 Detect the Antioxidant Capability of Antioxidants (I488/I405) <br>High
 +
                            fluorescence ratio (I488/405) means high antioxidant capacity.</figcaption>
 +
                    </figure>
 +
 +
                    <p class="EXP-content-p">
 +
                        As Fig.2~3 shown, in 30 mins, group Catechol and group Quercetin both show a decreasing in
 +
                        I405/I488 ratio (Fig.2), which means that Quercetin and Catechol have antioxidant activity.
 +
                        Besides, the Quercetin treated group shows a faster decreasing in I405/I488 ratio than Catechol
 +
                        under the same condition of time. According to our modeling, this indicates that the Quercetin
 +
                        have more antioxidant activity than Catechol, which is consistent with CAA assay result. (Wolfe
 +
                        K L, Liu R H et al.)<sup onmouseover="tooltip.pop(this, '#tip-1', {position:1, offsetX:-20, effect:'slide',hideDelay: 10})"
 +
                            style="color:#38679a;">[1]</sup>
 +
                    </p>
 +
 +
                    <p class="EXP-content-p">
 +
                        But Vitamin C is less effective and had no obvious antioxidant effect in this assay. We thought
 +
                        this result may had two reasons. First, the Vitamin C shows a low direct-antioxidant activity,
 +
                        especially at low concentration (10 µM) compared to another two. Or the Vitamin C main
 +
                        principle of anti-oxidation is its indirect-antioxidant activity, like activation of cell’s
 +
                        natural anti-oxidative enzymes, which is hard to reflect in fluorescence ratio level just in 30
 +
                        mins.
 +
                        In a word, our system gave a similar result to CAA assay in three selected antioxidant tests.
 +
                        This proves our system can detect the antioxidant in living cell. But we need more antioxidant
 +
                        test to verify our system’s function and limitation, especially indirect-antioxidative
 +
                        antioxidant, for finding "Who can get an A?"
 +
                    </p>
 +
                </div>
 +
            </div>
 +
        </div>
 +
 +
        <div id="REG-1" class="cd-section">
 +
            <div class="EXP-title-2 EXP-margin-Title2Up">
 +
                <a style="text-decoration: none;color: #131313;">Summary</a>
 +
            </div>
 +
 +
            <div class="EXP-content-all">
 +
                <div class="EXP-content">
 +
                    <figure class="EXP-Fig EXP-margin-toContentP">
 +
                        <img src="https://static.igem.org/mediawiki/2018/9/98/T--BIT-China--ResultSummary1.png">
 +
                        <figcaption></figcaption>
 +
                    </figure>
 +
                    <figure class="EXP-Fig EXP-margin-toContentP">
 +
                        <img src="https://static.igem.org/mediawiki/2018/2/23/T--BIT-China--ResultSummary2.png">
 +
                        <figcaption></figcaption>
 +
                    </figure>
 +
                    <figure class="EXP-Fig EXP-margin-toContentP">
 +
                        <img src="https://static.igem.org/mediawiki/2018/8/88/T--BIT-China--ResultSummary3.png">
 +
                        <figcaption></figcaption>
 +
                    </figure>
 +
                    <figure class="EXP-Fig EXP-margin-toContentP">
 +
                        <img src="https://static.igem.org/mediawiki/2018/3/37/T--BIT-China--ResultSummary4.png">
 +
                        <figcaption></figcaption>
 +
                    </figure>
 +
                </div>
 +
            </div>
 +
        </div>
 +
    </div>
 +
 +
    <!-- footer start -->
 +
    <div class="footer-all" style="margin-top:65px;z-index: 1;">
 +
        <div class="footer-left">
 +
            <img src="https://static.igem.org/mediawiki/2018/c/ca/T--BIT-China--iGEM2018-sponsor-1.png">
 +
            <img src="https://static.igem.org/mediawiki/2018/0/07/T--BIT-China--iGEM2018-sponsor-2.png">
 +
        </div>
 +
        <div class="footer-right">
 +
            <p style="font-family:'kg_second_chances_solidRg';font-size:12px;margin: 0;padding: 0 0 3px;margin-top: 6px;">Contact</p>
 +
            <p style="font-size:15px;margin: 0;padding: 0;margin-top: 4px;">Institute of
 +
                Biotransformation and synthetic biosystem School of Chemistry and Chemical Engineering.
 +
            </p>
 +
            <p style="font-size:15px;margin: 0;padding: 0;margin-top: 4px;">
 +
                Beijing Institute of Technology
 +
            </p>
 +
            <p style="font-size:15px;margin: 0;padding: 0;margin-top: 4px;">
 +
                100081, Beijing
 +
            </p>
 +
            <p style="font-size:15px;margin: 0;padding: 0;margin-top: 4px;">
 +
                Email:lichun@bit.edu.cn
 +
            </p>
 +
 +
            <p style="font-size:15px;margin: 0;padding: 0;margin-top: 4px;color:  rgb(161, 161, 161);">
 +
                Copyright © 2018 BIT-China
 +
            </p>
 +
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Revision as of 20:29, 17 October 2018

Our engineered yeast should finally have the function of monitoring antioxidants in real time. To demonstrate this, we integrated the two subsystems together into ∆yca1 yeast and had series of tests on it, in which the increasing of ROS in yeast can be effectively captured by our roGFP2-Orp1 protein.

In order to regulate endogenous ROS, we replaced yeast endogenous YNO1 promotor with a galactose-inducible promotor, GAL1-GAL10. We then constructed the plasmid pESC-TEF1p-roGFP2-Orp1-CYC1t, a shuttle vector marked with trp1. Cellular redox status were monitored by measuring the fluorescence ratio at 488 nm (reduced state) and 405 nm (oxidized state). Cells were cultured in SD medium supplemented with 1% galactose at 30℃, during which GAL1-GAL10 promotor was induced when galactose added. It suggests that overexpression of yno1 gene will increase cells ROS level and decline the fluorescence ratio at 488 nm and 405 nm, which means there are more ROS in our modified strain.

As the results showing, our output subsystem can reflect the accumulation of endogenous ROS caused by regulator subsystem.

Fig.1 Intracellular ROS accumulation.

The red curve indicates the fluorescence ratio at 488 nm (reduced state) and 405 nm (oxidized state) of engineered yeast which overexpressed Yno1 and constructed the plasmid pESC-TEF1p-roGFP2-Orp1-CYC1t. And the blue curve indicates the fluorescence ratio at 488 nm (reduced state) and 405 nm (oxidized state) of engineered yeast which only overexpressed Yno1. The red curve decline over time but not the blue one, which means roGFP2-Orp1 protein is able to show the accumulation of ROS in our yeast.

Since we have proved the feasibility that the antioxidative ability of antioxidant can be measured by fluorescence probes. We can easily set up the relationship between our system and real antioxidative ability of antioxidant.

After the whole system construction, we need to test the function of our system and then evaluate the effect of antioxidants through our system.

To detect the antioxidant capacity of antioxidants, we have selected three antioxidants, Vitamin C, Quercetin and Catechol, as our samples, and cultured engineered strain (Δyca1-yno1-roGFP2-Orp1) until the period with high ROS accumulation (24-36 h). Then the antioxidants were added into yeast culture and incubated for 30 minutes. The control group was treated with aseptic water and ethanol. The fluorescence intensity ratio (I488/I408 or I405/I488) of the reduction peak (488nm) and oxidation peak (405nm) was measured by Microplate Reader, and the antioxidant activity of antioxidants was characterized by that ratio change rate. And the emission wavelength is 510nm. The results are showed in Fig. 2.

Fig.2 Detect the Antioxidant Capability of Antioxidants (I405/I488)
Low fluorescence ratio (I488/405) means low intracellular ROS level.
Fig.3 Detect the Antioxidant Capability of Antioxidants (I488/I405)
High fluorescence ratio (I488/405) means high antioxidant capacity.

As Fig.2~3 shown, in 30 mins, group Catechol and group Quercetin both show a decreasing in I405/I488 ratio (Fig.2), which means that Quercetin and Catechol have antioxidant activity. Besides, the Quercetin treated group shows a faster decreasing in I405/I488 ratio than Catechol under the same condition of time. According to our modeling, this indicates that the Quercetin have more antioxidant activity than Catechol, which is consistent with CAA assay result. (Wolfe K L, Liu R H et al.)[1]

But Vitamin C is less effective and had no obvious antioxidant effect in this assay. We thought this result may had two reasons. First, the Vitamin C shows a low direct-antioxidant activity, especially at low concentration (10 µM) compared to another two. Or the Vitamin C main principle of anti-oxidation is its indirect-antioxidant activity, like activation of cell’s natural anti-oxidative enzymes, which is hard to reflect in fluorescence ratio level just in 30 mins. In a word, our system gave a similar result to CAA assay in three selected antioxidant tests. This proves our system can detect the antioxidant in living cell. But we need more antioxidant test to verify our system’s function and limitation, especially indirect-antioxidative antioxidant, for finding "Who can get an A?"