Line 150: | Line 150: | ||
we also want to produce the higher value product in our project. | we also want to produce the higher value product in our project. | ||
</p> | </p> | ||
− | < | + | <div class="card card-body"> |
− | < | + | <table> |
− | <th colspan="1">Equation</th> | + | <tr> |
− | + | <th colspan="1">Equation</th> | |
− | + | <th colspan="1">Enzyme</th> | |
− | + | <th colspan="1">Kinetic law</th> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${Xylose \rightarrow Xylulose}$$ | |
− | + | $${Xylulose + ATP \rightarrow X5P}$$ | |
− | + | $${X5P \rightarrow Ru5P}$$ | |
− | + | </td> | |
− | + | <td colspan="1">xylose isomerase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${Ru5P \xrightarrow{PRK} + RuBP}$$</td> | |
− | + | <td colspan="1">Phosphoribulokinase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${RuBP + CO_2 \xrightarrow{RuBisCo} + 3PG}$$</td> | |
− | + | <td colspan="1">Ribulose-1,5-bisphosphate carboxylase/ oxygenase</td> | |
− | + | <td colspan="1">Ping-Pong-Bi-Bi</td> | |
− | + | </tr> | |
+ | </table> | ||
+ | </div> | ||
<div id="centerimg"> | <div id="centerimg"> | ||
<img class="twoimg contentimg" src="fig2.png"> | <img class="twoimg contentimg" src="fig2.png"> | ||
Line 185: | Line 187: | ||
<i>E.coli</i> will comsume the xylose and then produce the temporary production, pyruvate. | <i>E.coli</i> will comsume the xylose and then produce the temporary production, pyruvate. | ||
</p> | </p> | ||
− | < | + | <div class="card card-body"> |
− | < | + | <table> |
− | <th colspan="1">Equation</th> | + | <tr> |
− | + | <th colspan="1">Equation</th> | |
− | + | <th colspan="1">Enzyme</th> | |
− | + | <th colspan="1">Kinetic law</th> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${X5P + R5P \rightarrow S7P + GAP}$$</td> | |
− | + | <td colspan="1">transketolase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${S7P + GAP \rightarrow F6P + E4P}$$</td> | |
− | + | <td colspan="1">transaldolase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${E4P + X5P \rightarrow F6P + GAP}$$</td> | |
− | + | <td colspan="1">transaldolase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${FBP \rightarrow GAP}$$</td> | |
− | + | <td colspan="1">fructose-bisphosphate aldolase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${DHAP \rightarrow GAP}$$</td> | |
− | + | <td colspan="1">triose-phosphate isomerase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${F6P + ATP \rightarrow FBP + ADP}$$</td> | |
− | + | <td colspan="1">6-phosphofructokinase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${F6P \rightarrow GAP}$$</td> | |
− | + | <td colspan="1">glucose-6-phosphate isomerase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${G6P + NADP^+ \rightarrow 6PG + NAPDH}$$</td> | |
− | + | <td colspan="1">6-phosphogluconolactonase</td> | |
− | + | <td colspan="1">Ping-Pong-Bi-Bi</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${6PG + NADP^+ \rightarrow Ru5P + NAPDH}$$</td> | |
− | + | <td colspan="1">phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating)</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1" rowspan="2">$${GAP + NADP^+ + ADP \rightarrow 3PGA + NAPDH + ATP}$$</td> | |
− | + | <td colspan="1">glyceraldehyde-3-phosphate dehydrogenase (NADP+)</td> | |
− | + | <td colspan="1" rowspan="2">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">phosphoglycerate kinase</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1" rowspan="2">$${3PGA \rightarrow PEP}$$</td> | |
− | + | <td colspan="1">phosphoglycerate mutase</td> | |
− | + | <td colspan="1" rowspan="2">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">phosphopyruvate hydratase</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${PEP \rightarrow PYR}$$</td> | |
− | + | <td colspan="1">pyruvate kinase</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
+ | </table> | ||
+ | </div> | ||
<div id="centerimg"> | <div id="centerimg"> | ||
<img class="twoimg contentimg" src="fig3.png"> | <img class="twoimg contentimg" src="fig3.png"> | ||
Line 270: | Line 274: | ||
and then provide the energy needed for the reaction in the organism. | and then provide the energy needed for the reaction in the organism. | ||
</p> | </p> | ||
− | < | + | <div class="card card-body"> |
− | < | + | <table> |
− | <th colspan="1">Equation</th> | + | <tr> |
− | + | <th colspan="1">Equation</th> | |
− | + | <th colspan="1">Enzyme</th> | |
− | + | <th colspan="1">Kinetic law</th> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${PEP + HCO_3^- + NAD^+ \rightarrow OAA + NADH}$$</td> | |
− | + | <td colspan="1">PEP carboxylase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${AcCoA \rightarrow CIT}$$</td> | |
− | + | <td colspan="1">citrate synthase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${cIT \rightarrow ICIT}$$</td> | |
− | + | <td colspan="1">aconitate hydratase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${ICIT + NADP^+ \rightarrow AKG + NADPH + CO_2}$$</td> | |
− | + | <td colspan="1">isocitrate dehydrogenase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${AKG + NAD^+ \rightarrow SUCCoA + NADH + CO_2}$$</td> | |
− | + | <td colspan="1">dihydrolipoyllysine-residue succinyltransferase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${SUCCoA + ADP \rightarrow SUCC + ATP}$$</td> | |
− | + | <td colspan="1">succinate-CoA ligase (ADP-forming)</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${SUCC + FAD \rightarrow FUM + FADH_2}$$</td> | |
− | + | <td colspan="1">succinate dehydrogenase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${FUM \rightarrow MAL}$$</td> | |
− | + | <td colspan="1">fumarate hydratase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${MAL + NAD^+ \rightarrow OAA + NADH}$$</td> | |
− | + | <td colspan="1">malate dehydrogenase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${OAA \rightarrow CIT}$$</td> | |
− | + | <td colspan="1">citrate synthase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${PYR \rightarrow NADH + AcCoA + CO_2}$$</td> | |
− | + | <td colspan="1">pyruvate dehydrogenase complex</td> | |
− | + | <td colspan="1">Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${ICIT \rightarrow GOX}$$</td> | |
− | + | <td colspan="1">isocitrate lyase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${GOX \rightarrow MAL}$$</td> | |
− | + | <td colspan="1">malate synthase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td colspan="1">$${ICIT \rightarrow SUCC + GOX}$$</td> | |
− | + | <td colspan="1">isocitrate lyase</td> | |
− | + | <td colspan="1">Reversible Henri-Michaelis-Menten</td> | |
− | + | </tr> | |
+ | </table> | ||
+ | </div> | ||
<div id="centerimg"> | <div id="centerimg"> | ||
<img class="twoimg contentimg" src="fig4.png"> | <img class="twoimg contentimg" src="fig4.png"> |
Revision as of 12:43, 24 September 2018