Difference between revisions of "Team:SZU-China/Parts"

(Prototype team page)
 
Line 1: Line 1:
−
{{SZU-China}}
+
{{SZU-China/Nav}}
 
<html>
 
<html>
  
  
−
<div class="column full_size">
 
−
<h1>Parts</h1>
 
−
<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
 
−
<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
 
−
</div>
 
  
−
<div class="column full_size">
+
<body data-spy="scroll" data-target="#myScrollspy" data-offset="10">
−
<div class="highlight decoration_background">
+
<div class="container-fluid">
−
<h3>Note</h3>
+
<div class="row">
−
<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
+
<div class="col-9 offset-1 shadow ">
−
</div>
+
−
</div>
+
  
−
<div class="clear extra_space"></div>
+
<div class="text-center">
−
<div class="line_divider"></div>
+
<h1 style="color: #469789;">Basic Parts</h1>
−
<div class="clear extra_space"></div>
+
</div>
 +
 +
<div class="text-center">
 +
<h2 style="color: #469789;">Basic Parts</h2>
 +
</div>
 +
<div class="row">
 +
<p>This year, our team utilizes 3 kinds of new parts. Here are their individual function: </p>
 +
<ul>
 +
<li>
 +
1. can encode chitinase
  
 +
</li>
 +
<li>
 +
2. can encode chitinase
 +
</li>
 +
<li>
 +
3. can produce host collagen analogs to evade host blood cell recognition
 +
</li>
 +
</ul>
 +
<table class="table table-bordered">
 +
<thead class="text-center">
 +
<tr>
 +
<th scope="col">Part Number</th>
 +
<th scope="col">Name</th>
 +
<th scope="col">Type</th>
 +
<th scope="col">Part Description</th>
 +
</tr>
 +
</thead>
 +
<tbody>
 +
<tr>
 +
<th scope="row"><a style="color: #469789;" href="http://parts.igem.org/Part:BBa_K2788000">BBa_K2788000</a></th>
 +
<td>HsbA_Beauveria bassiana ARSEF 2860</td>
 +
<td>Basic</td>
 +
<td>Encoded by the gene HsbA from Beauveria bassiana ARSEF 2860</td>
 +
 +
</tr>
 +
<tr>
 +
<th scope="row"><a style="color: #469789;" href="http://parts.igem.org/Part:BBa_K2788001">BBa_K2788001</a></th>
 +
<td>Bbchit_Beauveria bassiana ARSEF 2860</td>
 +
<td>Basic</td>
 +
<td>Encoded by the gene Bbchit from Beauveria bassiana ARSEF 2860</td>
 +
</tr>
 +
<tr>
 +
<th scope="row"><a style="color: #469789;" href="http://parts.igem.org/Part:BBa_K2788002">BBa_K2788002</a></th>
 +
<td>MCL1_Metarhizium robertsii ARSEF 23</td>
 +
<td>Basic</td>
 +
<td>MCL1_Metarhizium robertsii ARSEF 23</td>
 +
 +
</tr>
 +
</tbody>
 +
</table>
 +
</div>
  
 +
  
  
 +
<div class="text-center">
 +
<h2 style="color: #469789;">Composite Parts</h2>
 +
 +
</div>
 +
<div class="row">
 +
<p>We combined basic parts, fungal promoters and terminators, which are presented in the following table. You can click on the part number to see the details.</p>
 +
<table class="table table-bordered">
 +
<thead class="text-center">
 +
<tr>
 +
<th scope="col">Part Number</th>
 +
<th scope="col">Name</th>
 +
<th scope="col">Type</th>
 +
<th scope="col">Part Description</th>
 +
</tr>
 +
</thead>
 +
<tbody>
 +
<tr>
 +
<th scope="row"><a style="color: #469789;" href="http://parts.igem.org/Part:BBa_K2788010">BBa_K2788010</a></th>
 +
<td>PgpdA-HsbA-TtrpC</td>
 +
<td>Composite</td>
 +
<td>Encoded by the gene HsbA from Beauveria bassiana ARSEF 2860</td>
 +
 +
</tr>
 +
<tr>
 +
<th scope="row"><a style="color: #469789;" href="http://parts.igem.org/Part:BBa_K2788011">BBa_K2788011</a></th>
 +
<td>PgpdA-Bbchit-TtrpC</td>
 +
<td>Composite</td>
 +
<td>Encoded by the gene Bbchit from the Beauveria bassiana ARSEF 2860</td>
 +
</tr>
 +
 +
</tbody>
 +
</table>
 +
</div>
 +
 +
 +
<div class="text-center">
 +
<h2 style="color: #469789;">IMPROVED PARTS</h2>
 +
</div>
 +
<div class="row">
 +
<p>
 +
This year, our team have improved the existing parts by optimizing their sequence.
 +
The improved parts (in blue) and original existing parts (in green) are presented below.
 +
You can click on the part number to see the details.
 +
</p>
 +
<table class="table table-bordered">
 +
<thead class="text-center">
 +
<tr>
 +
<th scope="col">Part Number</th>
 +
<th scope="col">Name</th>
 +
<th scope="col">Type</th>
 +
<th scope="col">Part Description</th>
 +
</tr>
 +
</thead>
 +
<tbody>
 +
<tr>
 +
<th scope="row"><a href="http://parts.igem.org/Part:BBa_K2788020">BBa_K2788020</a>
 +
<br><a style="color: #469789;" href="http://parts.igem.org/Part:BBa_K2232003">BBa_K2232003</a></th>
 +
<td style="min-width: 150px;">C125-TupA-6His</td>
 +
<td>Coding sequence for another Na+ - H+ antiporter TupA from Bacillus Subtilus C125</td>
 +
<td>Optimize its sequence. Validation from the protein level</td>
 +
 +
</tr>
 +
 +
 +
</tbody>
 +
</table>
 +
</div>
 +
 +
 +
</div>
 +
  
−
<div class="column two_thirds_size">
+
<div class="col-2">
−
<div class="highlight decoration_B_full">
+
  
−
<h3>Adding parts to the registry</h3>
+
<nav id="myScrollspy" class="navbar navbar-light bg-light position-fixed">
−
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
+
<nav class="nav nav-pills flex-column">
  
−
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
+
<a class="nav-link" href="#"></a>
−
<div class="button_link">
+
−
<a href="http://parts.igem.org/Add_a_Part_to_the_Registry">
+
−
ADD PARTS
+
−
</a>
+
−
</div>
+
  
−
</div>
+
</nav>
−
</div>
+
</nav>
  
 +
</div>
  
 +
</div>
  
−
<div class="column third_size">
+
</div>
−
<div class="highlight decoration_A_full">
+
−
<h3>Inspiration</h3>
+
−
<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
+
  
−
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
+
</body>
−
<ul>
+
−
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
+
−
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
+
−
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
+
−
</ul>
+
−
</div>
+
−
</div>
+
−
 
+
−
 
+
−
<div class="clear extra_space"></div>
+
−
 
+
−
 
+
−
 
+
−
 
+
−
<div class="column full_size">
+
−
 
+
−
<h3>What information do I need to start putting my parts on the Registry?</h3>
+
−
<p>The information needed to initially create a part on the Registry is:</p>
+
−
<ul>
+
−
<li>Part Name</li>
+
−
<li>Part type</li>
+
−
<li>Creator</li>
+
−
<li>Sequence</li>
+
−
<li>Short Description (60 characters on what the DNA does)</li>
+
−
<li>Long Description (Longer description of what the DNA does)</li>
+
−
<li>Design considerations</li>
+
−
</ul>
+
−
 
+
−
<p>
+
−
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
+
−
 
+
−
</div>
+
−
 
+
−
 
+
−
<div class="clear extra_space"></div>
+
−
<div class="line_divider"></div>
+
−
<div class="clear extra_space"></div>
+
−
 
+
−
<div class="column full_size">
+
−
<h3>Part Table </h3>
+
−
 
+
−
<p>Please include a table of all the parts your team has made during your project on this page. Remember part characterization and measurement data must go on your team part pages on the Registry. </p>
+
−
 
+
−
</html>
+
−
<groupparts>iGEM18 SZU-China</groupparts>
+
−
<html>
+
−
</div>
+
  
  

Revision as of 15:01, 6 October 2018

Basic Parts

Basic Parts

This year, our team utilizes 3 kinds of new parts. Here are their individual function:

  • 1. can encode chitinase
  • 2. can encode chitinase
  • 3. can produce host collagen analogs to evade host blood cell recognition
Part Number Name Type Part Description
BBa_K2788000 HsbA_Beauveria bassiana ARSEF 2860 Basic Encoded by the gene HsbA from Beauveria bassiana ARSEF 2860
BBa_K2788001 Bbchit_Beauveria bassiana ARSEF 2860 Basic Encoded by the gene Bbchit from Beauveria bassiana ARSEF 2860
BBa_K2788002 MCL1_Metarhizium robertsii ARSEF 23 Basic MCL1_Metarhizium robertsii ARSEF 23

Composite Parts

We combined basic parts, fungal promoters and terminators, which are presented in the following table. You can click on the part number to see the details.

Part Number Name Type Part Description
BBa_K2788010 PgpdA-HsbA-TtrpC Composite Encoded by the gene HsbA from Beauveria bassiana ARSEF 2860
BBa_K2788011 PgpdA-Bbchit-TtrpC Composite Encoded by the gene Bbchit from the Beauveria bassiana ARSEF 2860

IMPROVED PARTS

This year, our team have improved the existing parts by optimizing their sequence. The improved parts (in blue) and original existing parts (in green) are presented below. You can click on the part number to see the details.

Part Number Name Type Part Description
BBa_K2788020
BBa_K2232003		 C125-TupA-6His Coding sequence for another Na+ - H+ antiporter TupA from Bacillus Subtilus C125 Optimize its sequence. Validation from the protein level