Difference between revisions of "Team:SZU-China/Results"

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<h1>Results</h1>
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<p>Here you can describe the results of your project and your future plans. </p>
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<div class="container-fluid">
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<div class="row">
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<h1>RESULTS</h1>
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<p>This year, in our project, we constructed a new expression vector working effectively in the fungus and submitted our parts and transforred into <i>Metarhizium anisopliae</i> 128 to increase the adhesion, penetration and immune avoidance capacity of the modified <i>Metarhizium anisopliae</i>. Therefore, we performed experiment on three aspects and the experimental characterizations of our parts are shown as follow.
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</p>
  
<div class="column third_size" >
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<div class="indent">
  
<h3>What should this page contain?</h3>
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<h2>Adhesion:PgpdA-HsbA-TtrpC</h2>
<ul>
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<p>In this part, PgpdA is a strong promoter that allows the HsbA protein to be expressed without induction. </p>
<li> Clearly and objectively describe the results of your work.</li>
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<p>The HsbA(<a href="http://parts.igem.org/Part:BBa_K2788000">BBa_K2788000</a> ) from Beauveria bassiana encodes a kind of membrane surface hydrophobic protein which helps our spores adhere to the wax on the cockroach body surface. Moreover, with the overexpression of HsbA, our spores can more effectively adhere to the cockroach. Then it will follow as spores’ germination, germinal tube, appressorium and the next penetrating process.
<li> Future plans for the project. </li>
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</p>
<li> Considerations for replicating the experiments. </li>
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<p>This part was insert into the expression vector by restriction sites EcoRI and PstI (Fig.1), and the correct construction of this recombinant plasmid was confirmed by PCR identification and sequencing of the PCR products.
</ul>
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</p>
</div>
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<div class="col-6 offset-3">
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<div class="card">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/a/ad/T--SZU-China--Result_1.png" />
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</div>
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<p id="cap" class="text-center"><b>Fig.1</b> Construction of expression vector HsbA-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei: <a href="http://parts.igem.org/Part:BBa_K2040101">BBa_K2040101</a>
 +
and <a href="http://parts.igem.org/Part:BBa_K2040102">BBa_K2040102</a> , and HsbA comes from the Beauveria bassiana ARSEF 2860. The PgpdA-HsbA-TtrpC part is connected to the pBC plasmid through the BioBrick site.</p>
 +
</div>
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<p>We transformed the expression vectors into <i>Metarhizium anisopliae</i> 128 by the method of Xiaoling Wang, and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis.
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</p>
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<div class="col-4 offset-4">
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<div class="card">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/f/f2/T--SZU-China--Result_2.jpg" />
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</div>
  
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</div>
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<div class="col-8 offset-2">
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<p id="cap" class="text-center"><b>Fig.2</b> 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 335 bp and 741bp respectively, which correspond to the length of M.a primer PCR product and HsbA primer PCR product. Lane 1: M.a primer PCR product; Lane 2: HsbA primer PCR product; Lane M: DL marker.
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</p>
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</div>
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<p>The transformed strain <i>Metarhizium anisopliae</i> 128 was grown in 1/4 SDAY liquid medium, and obtain total protein by FastPrep and ultrasonic crushing. The lysate was then centrifuged and the supernate were electrophoresed on a sodium dodecyl sulfate(SDS)-12% (wt/vol) polyacrylamide gel, followed by Coomassie blue staining.(Fig.3)
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</p>
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<div class="col-4 offset-4">
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<div class="card">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/d/da/T--SZU-China--Result_3.jpg" />
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</div>
  
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</div>
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<div class="col-8 offset-2">
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<p id="cap" class="text-center"><b>Fig.3</b> SDS-PAGE analysis of membrane protein of wild-type <i>Metarhizium anisopliae</i> 128 and modified <i>Metarhizium anisopliae</i> 128. Lane M: Marker Ladder;Lane 128:<i>Metarhizium anisopliae</i> 128;Lane HsbA1 and HsbA2: recombinant strain <i>Metarhizium anisopliae</i> 128. Lane HsbA1 and HsbA2 showed the same band(in red box) corresponded with the molecular weight of HsbA(24kDa).
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</p>
  
 +
</div>
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<p>Besides, we spread the spores of <i>Metarhizium anisopliae</i> 128 and <i>Metarhizium anisopliae</i> HsbA transformant onto the cockroaches’ legs. After 16h germination, we took out and placed the cockroaches’ legs on the scanning electron microscope for observation. Then we rinsed the observed area on the cockroaches’ legs with 200ul ddH2O and observed them on the microscope again. Finally, we can compare whether there is any change in the position and number of spores in the observing area.(Fig.4 and Fig.5)
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</p>
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<div class="col-8 offset-2">
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<div class="card">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/5/5f/T--SZU-China--Result_4.png" />
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</div>
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<p id="cap" class="text-center"><b>Fig.4</b> wild-type <i>Metarhizium anisopliae</i> 128: P1 is the picture before being rinsed and P2 is the picture after being rinsed. The spores amount is about 105 in P1 and spores amount is about 45 in P2. The retention rate is 45/105=42.86%
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</p>
  
<div class="column two_thirds_size" >
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</div>
<h3>Describe what your results mean </h3>
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<p>It’s obvious that it happens great change in the position and number of spores in the observing area of wild-type <i>Metarhizium anisopliae</i> 128 experimental group.
<ul>
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</p>
<li> Interpretation of the results obtained during your project. Don't just show a plot/figure/graph/other, tell us what you think the data means. This is an important part of your project that the judges will look for. </li>
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<div class="col-8 offset-2">
<li> Show data, but remember all measurement and characterization data must be on part pages in the Registry. </li>
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<div class="card">
<li> Consider including an analysis summary section to discuss what your results mean. Judges like to read what you think your data means, beyond all the data you have acquired during your project. </li>
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/2/23/T--SZU-China--Result_5.png" />
</ul>
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</div>
</div>
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<p id="cap" class="text-center"><b>Fig.5</b> <i>Metarhizium anisopliae</i> HsbA transformant: P3 is the picture before being rinsed and P4 is the picture after being rinsed. The spores amount is 32 in P3 and spores amount is about 29 in P4. The retention rate is 29/32=90.63%
 +
</p>
 +
</div>
 +
<p>It’s also obvious that it hardly happens change except the place circled in red in the position and number of spores in the observing area of <i>Metarhizium anisopliae</i> HsbA transformant experimental group.
 +
</p>
 +
<p>Therefore, this result well confirmed that <i>Metarhizium anisopliae</i> HsbA transformant certainly enhanced the capacity of adhesion.</p>
  
 +
</div>
  
<div class="clear extra_space"></div>
+
<div class="indent">
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<h2>Penetration: Bbchit</h2>
 +
<p>In order to make <i>Metarhizium anisopliae</i> penetrate the corpus callosum more efficiently, we transferred Bbchit(<a href="http://parts.igem.org/Part:BBa_K2788001">BBa_K2788001</a> ), a chitinase gene from Beauveria bassiana ARSEF 2860, which encodes a chitinase that can be secreted extracellularly. The chitin of the body surface decomposes, thereby destroying the wall of the corpus callosum, so that the genus Metarhizium enters the sputum.
 +
</p>
 +
<div class="col-6 offset-3">
 +
<div class="card">
 +
<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/e/e9/T--SZU-China--Result_6.png" />
 +
</div>
 +
<p id="cap" class="text-center"><b>Fig.6</b> Construction of expression vector Bbchit-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei: <a href="http://parts.igem.org/Part:BBa_K2040101" >BBa_K2040101</a> and
 +
<a href="http://parts.igem.org/Part:BBa_K2040102">BBa_K2040102</a>, and Bbchit comes from the Beauveria bassiana ARSEF 2860. The PgpdA-Bbchit-TtrpC part is connected to the pBC plasmid through the BioBrick site.
 +
</p>
 +
</div>
 +
<p>We have a part encoding Chitinase, the Bbchit express and function intracellularly. We constructed a shuttle vector to transform this part and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis
 +
</p>
 +
<div class="col-4 offset-4">
 +
<div class="card">
 +
<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/6/6d/T--SZU-China--Result_7.jpg" />
 +
</div>
  
 +
</div>
 +
<div class="col-8 offset-2">
 +
<p id="cap" class="text-center"><b>Fig.7</b> 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 335bp and 1044bp respectively, which correspond to the length of M.a primer PCR product and Bbchit primer PCR product. Lane 1: M.a primer PCR product; Lane 2: Bbchit primer PCR product; Lane M: DL marker.
 +
</p>
  
 +
</div>
 +
<p>The crude enzyme solution was obtained by cell disruption using ultrasonic, followed by SDS-PAGE protein electrophoresis and Coomassie blue staining.
 +
</p>
 +
<div class="col-4 offset-4">
 +
<div class="card">
 +
<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/6/61/T--SZU-China--Result_8.jpg" />
 +
</div>
  
<div class="column two_thirds_size" >
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</div>
<h3> Project Achievements </h3>
+
  
<p>You can also include a list of bullet points (and links) of the successes and failures you have had over your summer. It is a quick reference page for the judges to see what you achieved during your summer.</p>
+
<div class="col-8 offset-2">
 +
<p id="cap" class="text-center"><b>Fig.8</b> SDS-PAGE analysis of membrane protein of wild-type <i>Metarhizium anisopliae</i> 128 and modified <i>Metarhizium anisopliae</i> 128. Lane M: Marker Ladder;Lane 1:<i>Metarhizium anisopliae</i> 128;Lane 2: recombinant strain <i>Metarhizium anisopliae</i> 128. Lane 2 showed the band(in the red box) corresponded with the molecular weight of Bbchit(38kDa).</p>
  
<ul>
+
</div>
<li>A list of linked bullet points of the successful results during your project</li>
+
<p>To determine the activity of chitinase, we improved it according to the DNS colorimetric method of Kan Zhuo, Xiaozhen Shi. First, the standard curve was drawn with different concentration gradients of glucose solution, and 0.5 ml of the wild-type and transformed type 1, 3, 5, 7, and 9 days of culture solution were respectively taken for enzyme activity test: the crude enzyme obtained after filtering the culture solution was used. The solution was mixed with 0.5 ml of 1% chitin colloid, reacted at 37 ° C for 60 min, and then added to a 0.5 ml DNS boiling water bath for 10 min. The absorbance of the obtained product was measured and the enzyme activity was calculated. There were three groups of wild-type and transformed type. Parallel, three parallel experiments were performed in each group, and the final data were averaged.
<li>A list of linked bullet points of the unsuccessful results during your project. This is about being scientifically honest. If you worked on an area for a long time with no success, tell us so we know where you put your effort.</li>
+
</p>
</ul>
+
<p>We calculate activity based on the standard curve formula: U=(A540+0.03279)/2.202,a summary of the data at different times is made into a line chart as follows.
 +
</p>
 +
<div class="row">
 +
<div class="col-5 offset-1">
 +
<div class="card h-100">
 +
<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/e/ec/T--SZU-China--Result_9.jpg" />
 +
</div>
 +
<p id="cap" class="text-center"><b>Fig.9</b> Glucose standard curve</p>
 +
</div>
 +
<div class="col-5 offset-1">
 +
<div class="card h-100">
 +
<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/c/c9/T--SZU-China--Result_10.png" />
 +
</div>
 +
<p id="cap" class="text-center"><b>Fig.10</b> changes in chitinase activity over time.</p>
 +
</div>
 +
</div>
 +
<p>In order to verify the function of Bbchit from a macro level, we improved Kan Zhuo's chitin transparent circle method for verification. We stained the czapek solid medium without chitin colloids in red with 0.1% Congo red dye solution and then cultured wild-type and transformed Metarhizium. Compared with the size of the colony, the size of the transparent circle was compared to obtain the transformed type. The size of the transparent circle is the diameter of the chitin transparent ring (R2) and colonies. The ratio of the diameter (R1), expressed as R2/R1.The conclusion that the chitinase activity of <i>Metarhizium anisopliae</i> is enhanced.
 +
</p>
 +
<div class="col-8 offset-2">
 +
<div class="card">
 +
<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/1/1d/T--SZU-China--Result_11.png" />
 +
</div>
 +
<p id="cap" class="text-center">
 +
<b>Fig.11</b> A: wild-type <i>Metarhizium anisopliae</i> 128 produced transparent zone on Czapek chitin - induced medium; R1: 8mm, R2: 9mm; R2/R1=9/8 B: <i>Metarhizium anisopliae</i> HsbA transformant produced transparent zone on Czapek chitin - induced medium; R1’: 8mm, R2’: 12mm; R2’/R1’=12/8=3/2
  
</div>
+
</p>
  
 +
</div>
 +
<p>Therefore, these results well confirmed that the chitinase activity of <i>Metarhizium anisopliae</i> Bbchit transformant is about 1.3 times that of wild-type <i>Metarhizium anisopliae</i> 128. Our modified fungus certainly enhanced the capacity of penetration.
 +
</p>
  
 +
</div>
  
<div class="column third_size" >
+
<div class="indent">
<div class="highlight decoration_A_full">
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<h2>Immune avoidance: MCL1</h2>
<h3>Inspiration</h3>
+
</div>
<p>See how other teams presented their results.</p>
+
</div>
<ul>
+
</div>
<li><a href="https://2014.igem.org/Team:TU_Darmstadt/Results/Pathway">2014 TU Darmstadt </a></li>
+
</div>
<li><a href="https://2014.igem.org/Team:Imperial/Results">2014 Imperial </a></li>
+
<li><a href="https://2014.igem.org/Team:Paris_Bettencourt/Results">2014 Paris Bettencourt </a></li>
+
</ul>
+
</div>
+
</div>
+
  
 +
</body>
  
  

Revision as of 06:44, 10 October 2018

RESULTS

This year, in our project, we constructed a new expression vector working effectively in the fungus and submitted our parts and transforred into Metarhizium anisopliae 128 to increase the adhesion, penetration and immune avoidance capacity of the modified Metarhizium anisopliae. Therefore, we performed experiment on three aspects and the experimental characterizations of our parts are shown as follow.

Adhesion:PgpdA-HsbA-TtrpC

In this part, PgpdA is a strong promoter that allows the HsbA protein to be expressed without induction.

The HsbA(BBa_K2788000 ) from Beauveria bassiana encodes a kind of membrane surface hydrophobic protein which helps our spores adhere to the wax on the cockroach body surface. Moreover, with the overexpression of HsbA, our spores can more effectively adhere to the cockroach. Then it will follow as spores’ germination, germinal tube, appressorium and the next penetrating process.

This part was insert into the expression vector by restriction sites EcoRI and PstI (Fig.1), and the correct construction of this recombinant plasmid was confirmed by PCR identification and sequencing of the PCR products.

Fig.1 Construction of expression vector HsbA-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei: BBa_K2040101 and BBa_K2040102 , and HsbA comes from the Beauveria bassiana ARSEF 2860. The PgpdA-HsbA-TtrpC part is connected to the pBC plasmid through the BioBrick site.

We transformed the expression vectors into Metarhizium anisopliae 128 by the method of Xiaoling Wang, and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis.

Fig.2 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 335 bp and 741bp respectively, which correspond to the length of M.a primer PCR product and HsbA primer PCR product. Lane 1: M.a primer PCR product; Lane 2: HsbA primer PCR product; Lane M: DL marker.

The transformed strain Metarhizium anisopliae 128 was grown in 1/4 SDAY liquid medium, and obtain total protein by FastPrep and ultrasonic crushing. The lysate was then centrifuged and the supernate were electrophoresed on a sodium dodecyl sulfate(SDS)-12% (wt/vol) polyacrylamide gel, followed by Coomassie blue staining.(Fig.3)

Fig.3 SDS-PAGE analysis of membrane protein of wild-type Metarhizium anisopliae 128 and modified Metarhizium anisopliae 128. Lane M: Marker Ladder;Lane 128:Metarhizium anisopliae 128;Lane HsbA1 and HsbA2: recombinant strain Metarhizium anisopliae 128. Lane HsbA1 and HsbA2 showed the same band(in red box) corresponded with the molecular weight of HsbA(24kDa).

Besides, we spread the spores of Metarhizium anisopliae 128 and Metarhizium anisopliae HsbA transformant onto the cockroaches’ legs. After 16h germination, we took out and placed the cockroaches’ legs on the scanning electron microscope for observation. Then we rinsed the observed area on the cockroaches’ legs with 200ul ddH2O and observed them on the microscope again. Finally, we can compare whether there is any change in the position and number of spores in the observing area.(Fig.4 and Fig.5)

Fig.4 wild-type Metarhizium anisopliae 128: P1 is the picture before being rinsed and P2 is the picture after being rinsed. The spores amount is about 105 in P1 and spores amount is about 45 in P2. The retention rate is 45/105=42.86%

It’s obvious that it happens great change in the position and number of spores in the observing area of wild-type Metarhizium anisopliae 128 experimental group.

Fig.5 Metarhizium anisopliae HsbA transformant: P3 is the picture before being rinsed and P4 is the picture after being rinsed. The spores amount is 32 in P3 and spores amount is about 29 in P4. The retention rate is 29/32=90.63%

It’s also obvious that it hardly happens change except the place circled in red in the position and number of spores in the observing area of Metarhizium anisopliae HsbA transformant experimental group.

Therefore, this result well confirmed that Metarhizium anisopliae HsbA transformant certainly enhanced the capacity of adhesion.

Penetration: Bbchit

In order to make Metarhizium anisopliae penetrate the corpus callosum more efficiently, we transferred Bbchit(BBa_K2788001 ), a chitinase gene from Beauveria bassiana ARSEF 2860, which encodes a chitinase that can be secreted extracellularly. The chitin of the body surface decomposes, thereby destroying the wall of the corpus callosum, so that the genus Metarhizium enters the sputum.

Fig.6 Construction of expression vector Bbchit-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei: BBa_K2040101 and BBa_K2040102, and Bbchit comes from the Beauveria bassiana ARSEF 2860. The PgpdA-Bbchit-TtrpC part is connected to the pBC plasmid through the BioBrick site.

We have a part encoding Chitinase, the Bbchit express and function intracellularly. We constructed a shuttle vector to transform this part and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis

Fig.7 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 335bp and 1044bp respectively, which correspond to the length of M.a primer PCR product and Bbchit primer PCR product. Lane 1: M.a primer PCR product; Lane 2: Bbchit primer PCR product; Lane M: DL marker.

The crude enzyme solution was obtained by cell disruption using ultrasonic, followed by SDS-PAGE protein electrophoresis and Coomassie blue staining.

Fig.8 SDS-PAGE analysis of membrane protein of wild-type Metarhizium anisopliae 128 and modified Metarhizium anisopliae 128. Lane M: Marker Ladder;Lane 1:Metarhizium anisopliae 128;Lane 2: recombinant strain Metarhizium anisopliae 128. Lane 2 showed the band(in the red box) corresponded with the molecular weight of Bbchit(38kDa).

To determine the activity of chitinase, we improved it according to the DNS colorimetric method of Kan Zhuo, Xiaozhen Shi. First, the standard curve was drawn with different concentration gradients of glucose solution, and 0.5 ml of the wild-type and transformed type 1, 3, 5, 7, and 9 days of culture solution were respectively taken for enzyme activity test: the crude enzyme obtained after filtering the culture solution was used. The solution was mixed with 0.5 ml of 1% chitin colloid, reacted at 37 ° C for 60 min, and then added to a 0.5 ml DNS boiling water bath for 10 min. The absorbance of the obtained product was measured and the enzyme activity was calculated. There were three groups of wild-type and transformed type. Parallel, three parallel experiments were performed in each group, and the final data were averaged.

We calculate activity based on the standard curve formula: U=(A540+0.03279)/2.202,a summary of the data at different times is made into a line chart as follows.

Fig.9 Glucose standard curve

Fig.10 changes in chitinase activity over time.

In order to verify the function of Bbchit from a macro level, we improved Kan Zhuo's chitin transparent circle method for verification. We stained the czapek solid medium without chitin colloids in red with 0.1% Congo red dye solution and then cultured wild-type and transformed Metarhizium. Compared with the size of the colony, the size of the transparent circle was compared to obtain the transformed type. The size of the transparent circle is the diameter of the chitin transparent ring (R2) and colonies. The ratio of the diameter (R1), expressed as R2/R1.The conclusion that the chitinase activity of Metarhizium anisopliae is enhanced.

Fig.11 A: wild-type Metarhizium anisopliae 128 produced transparent zone on Czapek chitin - induced medium; R1: 8mm, R2: 9mm; R2/R1=9/8 B: Metarhizium anisopliae HsbA transformant produced transparent zone on Czapek chitin - induced medium; R1’: 8mm, R2’: 12mm; R2’/R1’=12/8=3/2

Therefore, these results well confirmed that the chitinase activity of Metarhizium anisopliae Bbchit transformant is about 1.3 times that of wild-type Metarhizium anisopliae 128. Our modified fungus certainly enhanced the capacity of penetration.

Immune avoidance: MCL1